EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000029439 (Gene tree)
Gene ID: 231769
Gene Symbol: Sfswap
Alias: 1190005N23Rik|6330437E22Rik|Sfrs8
Full Name: splicing factor SWAP
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 70164 bases
Position: chr5:129501221-129571384
Accession: 101760
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000062413	DRY_EERY	PF09750.9	1.5e-32	1	1
ENSMUSP00000062413	Surp	PF01805.20	1.2e-26	1	2
ENSMUSP00000062413	Surp	PF01805.20	1.2e-26	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000200662	-	725	-	-	- (aa)	-	-
ENSMUST00000199215	-	559	-	ENSMUSP00000143640	69 (aa)	-	A0A0G2JGP0
ENSMUST00000053737	-	3313	XM_006504300	ENSMUSP00000062413	945 (aa)	XP_006504363	Q3USH5
ENSMUST00000198266	-	2107	-	-	- (aa)	-	-
ENSMUST00000195961	-	680	-	-	- (aa)	-	-
ENSMUST00000196698	-	2625	-	ENSMUSP00000142464	121 (aa)	-	A0A0G2JDQ9
ENSMUST00000199925	-	5127	-	-	- (aa)	-	-
ENSMUST00000199692	-	1277	-	-	- (aa)	-	-
ENSMUST00000198836	-	692	-	-	- (aa)	-	-
ENSMUST00000196147	-	305	-	-	- (aa)	-	-
ENSMUST00000198423	-	655	-	-	- (aa)	-	-
ENSMUST00000199887	-	3398	-	-	- (aa)	-	-
ENSMUST00000199394	-	426	-	-	- (aa)	-	-
ENSMUST00000200500	-	437	-	ENSMUSP00000143351	82 (aa)	-	A0A0G2JFY2
ENSMUST00000196873	-	668	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000029439's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029439's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029439	Sfswap	68	37.805	ENSG00000104859	CLASRP	53	47.826	Homo_sapiens
ENSMUSG00000029439	Sfswap	100	90.909	ENSG00000061936	SFSWAP	100	90.909	Homo_sapiens
ENSMUSG00000029439	Sfswap	84	64.423	ENSAPOG00000005784	sfswap	86	80.952	Acanthochromis_polyacanthus
ENSMUSG00000029439	Sfswap	94	90.351	ENSAMEG00000013818	SFSWAP	100	84.794	Ailuropoda_melanoleuca
ENSMUSG00000029439	Sfswap	84	64.423	ENSACIG00000009240	-	68	80.000	Amphilophus_citrinellus
ENSMUSG00000029439	Sfswap	67	77.778	ENSAOCG00000016469	sfswap	97	49.142	Amphiprion_ocellaris
ENSMUSG00000029439	Sfswap	67	77.778	ENSAPEG00000004965	sfswap	97	51.064	Amphiprion_percula
ENSMUSG00000029439	Sfswap	94	60.526	ENSATEG00000021053	sfswap	56	62.683	Anabas_testudineus
ENSMUSG00000029439	Sfswap	100	75.653	ENSAPLG00000013808	SFSWAP	97	76.915	Anas_platyrhynchos
ENSMUSG00000029439	Sfswap	100	87.895	ENSANAG00000001518	SFSWAP	100	87.895	Aotus_nancymaae
ENSMUSG00000029439	Sfswap	84	64.423	ENSACLG00000020159	sfswap	91	67.778	Astatotilapia_calliptera
ENSMUSG00000029439	Sfswap	100	87.553	ENSBTAG00000000439	SFSWAP	100	87.342	Bos_taurus
ENSMUSG00000029439	Sfswap	100	88.409	ENSCJAG00000003613	SFSWAP	100	87.566	Callithrix_jacchus
ENSMUSG00000029439	Sfswap	100	85.941	ENSCAFG00000006625	SFSWAP	100	86.152	Canis_familiaris
ENSMUSG00000029439	Sfswap	87	79.095	ENSCAFG00020011254	SFSWAP	99	79.213	Canis_lupus_dingo
ENSMUSG00000029439	Sfswap	100	87.447	ENSCHIG00000008838	SFSWAP	100	87.236	Capra_hircus
ENSMUSG00000029439	Sfswap	100	87.869	ENSTSYG00000010303	SFSWAP	100	88.502	Carlito_syrichta
ENSMUSG00000029439	Sfswap	92	87.457	ENSCAPG00000004394	SFSWAP	96	88.255	Cavia_aperea
ENSMUSG00000029439	Sfswap	94	95.614	ENSCPOG00000005280	SFSWAP	100	88.409	Cavia_porcellus
ENSMUSG00000029439	Sfswap	100	87.671	ENSCCAG00000037255	SFSWAP	100	87.144	Cebus_capucinus
ENSMUSG00000029439	Sfswap	100	88.924	ENSCATG00000031094	SFSWAP	100	89.030	Cercocebus_atys
ENSMUSG00000029439	Sfswap	94	96.491	ENSCLAG00000008380	SFSWAP	100	90.295	Chinchilla_lanigera
ENSMUSG00000029439	Sfswap	100	88.713	ENSCSAG00000001884	SFSWAP	100	88.819	Chlorocebus_sabaeus
ENSMUSG00000029439	Sfswap	92	73.007	ENSCHOG00000003578	SFSWAP	100	73.121	Choloepus_hoffmanni
ENSMUSG00000029439	Sfswap	100	88.924	ENSCANG00000036501	SFSWAP	100	89.030	Colobus_angolensis_palliatus
ENSMUSG00000029439	Sfswap	100	96.508	ENSCGRG00001011284	Sfswap	100	96.508	Cricetulus_griseus_chok1gshd
ENSMUSG00000029439	Sfswap	100	96.508	ENSCGRG00000017417	Sfswap	100	96.508	Cricetulus_griseus_crigri
ENSMUSG00000029439	Sfswap	84	66.990	ENSCSEG00000003773	sfswap	99	50.000	Cynoglossus_semilaevis
ENSMUSG00000029439	Sfswap	100	59.504	ENSCVAG00000001208	-	100	59.504	Cyprinodon_variegatus
ENSMUSG00000029439	Sfswap	52	59.740	ENSCVAG00000001205	-	72	48.467	Cyprinodon_variegatus
ENSMUSG00000029439	Sfswap	94	89.474	ENSDNOG00000018742	SFSWAP	100	84.345	Dasypus_novemcinctus
ENSMUSG00000029439	Sfswap	97	83.007	ENSDORG00000010352	Sfswap	99	82.244	Dipodomys_ordii
ENSMUSG00000029439	Sfswap	68	56.627	FBgn0003638	su(w[a])	56	55.556	Drosophila_melanogaster
ENSMUSG00000029439	Sfswap	86	69.360	ENSETEG00000016657	-	91	69.697	Echinops_telfairi
ENSMUSG00000029439	Sfswap	84	38.486	ENSEBUG00000016748	SFSWAP	93	43.421	Eptatretus_burgeri
ENSMUSG00000029439	Sfswap	100	87.447	ENSEASG00005016502	SFSWAP	100	87.869	Equus_asinus_asinus
ENSMUSG00000029439	Sfswap	98	87.163	ENSECAG00000007657	SFSWAP	99	87.594	Equus_caballus
ENSMUSG00000029439	Sfswap	86	73.684	ENSEEUG00000001713	SFSWAP	99	73.374	Erinaceus_europaeus
ENSMUSG00000029439	Sfswap	94	66.667	ENSELUG00000010942	sfswap	99	64.720	Esox_lucius
ENSMUSG00000029439	Sfswap	100	86.061	ENSFCAG00000010778	SFSWAP	100	86.378	Felis_catus
ENSMUSG00000029439	Sfswap	100	75.230	ENSFALG00000009577	SFSWAP	51	76.316	Ficedula_albicollis
ENSMUSG00000029439	Sfswap	94	96.491	ENSFDAG00000017235	SFSWAP	100	89.496	Fukomys_damarensis
ENSMUSG00000029439	Sfswap	94	61.404	ENSFHEG00000011149	-	99	55.679	Fundulus_heteroclitus
ENSMUSG00000029439	Sfswap	67	77.778	ENSGMOG00000009205	sfswap	76	71.096	Gadus_morhua
ENSMUSG00000029439	Sfswap	97	76.799	ENSGALG00000002487	SFSWAP	97	76.774	Gallus_gallus
ENSMUSG00000029439	Sfswap	67	77.778	ENSGAFG00000006272	sfswap	89	68.022	Gambusia_affinis
ENSMUSG00000029439	Sfswap	77	72.549	ENSGACG00000017647	sfswap	99	53.433	Gasterosteus_aculeatus
ENSMUSG00000029439	Sfswap	100	73.212	ENSGAGG00000002611	SFSWAP	96	75.713	Gopherus_agassizii
ENSMUSG00000029439	Sfswap	100	88.328	ENSGGOG00000014877	SFSWAP	100	88.749	Gorilla_gorilla
ENSMUSG00000029439	Sfswap	84	64.423	ENSHBUG00000005629	sfswap	54	67.655	Haplochromis_burtoni
ENSMUSG00000029439	Sfswap	100	90.717	ENSHGLG00000019216	SFSWAP	100	90.823	Heterocephalus_glaber_female
ENSMUSG00000029439	Sfswap	100	90.506	ENSHGLG00100019350	SFSWAP	100	90.612	Heterocephalus_glaber_male
ENSMUSG00000029439	Sfswap	84	62.857	ENSHCOG00000009475	sfswap	97	51.073	Hippocampus_comes
ENSMUSG00000029439	Sfswap	92	67.419	ENSIPUG00000010598	sfswap	99	51.521	Ictalurus_punctatus
ENSMUSG00000029439	Sfswap	100	89.440	ENSSTOG00000000773	SFSWAP	100	89.440	Ictidomys_tridecemlineatus
ENSMUSG00000029439	Sfswap	100	90.717	ENSJJAG00000006609	Sfswap	100	90.823	Jaculus_jaculus
ENSMUSG00000029439	Sfswap	67	77.778	ENSKMAG00000013168	sfswap	89	65.676	Kryptolebias_marmoratus
ENSMUSG00000029439	Sfswap	100	65.021	ENSLACG00000018678	SFSWAP	96	64.876	Latimeria_chalumnae
ENSMUSG00000029439	Sfswap	92	84.589	ENSLAFG00000014462	SFSWAP	100	84.932	Loxodonta_africana
ENSMUSG00000029439	Sfswap	98	88.889	ENSMFAG00000037352	SFSWAP	100	81.555	Macaca_fascicularis
ENSMUSG00000029439	Sfswap	100	89.030	ENSMMUG00000020343	SFSWAP	100	88.713	Macaca_mulatta
ENSMUSG00000029439	Sfswap	100	89.030	ENSMNEG00000041002	SFSWAP	100	88.713	Macaca_nemestrina
ENSMUSG00000029439	Sfswap	100	86.709	ENSMLEG00000035728	SFSWAP	100	86.287	Mandrillus_leucophaeus
ENSMUSG00000029439	Sfswap	84	64.423	ENSMZEG00005017834	SFSWAP	88	67.209	Maylandia_zebra
ENSMUSG00000029439	Sfswap	88	62.500	ENSMZEG00005009699	-	75	73.333	Maylandia_zebra
ENSMUSG00000029439	Sfswap	97	68.744	ENSMGAG00000002191	SFSWAP	97	69.990	Meleagris_gallopavo
ENSMUSG00000029439	Sfswap	100	88.279	ENSMICG00000004465	SFSWAP	100	89.229	Microcebus_murinus
ENSMUSG00000029439	Sfswap	100	96.190	ENSMOCG00000014390	Sfswap	100	96.190	Microtus_ochrogaster
ENSMUSG00000029439	Sfswap	84	49.057	ENSMMOG00000021053	-	76	64.685	Mola_mola
ENSMUSG00000029439	Sfswap	67	77.778	ENSMALG00000012603	sfswap	97	50.000	Monopterus_albus
ENSMUSG00000029439	Sfswap	100	100.000	MGP_CAROLIEiJ_G0027780	Sfswap	100	100.000	Mus_caroli
ENSMUSG00000029439	Sfswap	100	99.174	MGP_PahariEiJ_G0024360	Sfswap	100	99.174	Mus_pahari
ENSMUSG00000029439	Sfswap	100	100.000	MGP_SPRETEiJ_G0028779	Sfswap	100	100.000	Mus_spretus
ENSMUSG00000029439	Sfswap	100	85.201	ENSMPUG00000002218	SFSWAP	100	85.095	Mustela_putorius_furo
ENSMUSG00000029439	Sfswap	94	89.474	ENSMLUG00000011296	SFSWAP	100	77.060	Myotis_lucifugus
ENSMUSG00000029439	Sfswap	100	92.397	ENSNGAG00000018167	Sfswap	100	92.397	Nannospalax_galili
ENSMUSG00000029439	Sfswap	68	58.012	ENSNBRG00000020857	sfswap	91	66.269	Neolamprologus_brichardi
ENSMUSG00000029439	Sfswap	100	86.632	ENSNLEG00000008386	SFSWAP	100	86.737	Nomascus_leucogenys
ENSMUSG00000029439	Sfswap	71	86.594	ENSMEUG00000009556	-	79	86.594	Notamacropus_eugenii
ENSMUSG00000029439	Sfswap	100	74.000	ENSOPRG00000006983	-	100	74.000	Ochotona_princeps
ENSMUSG00000029439	Sfswap	100	89.979	ENSODEG00000008020	SFSWAP	100	89.979	Octodon_degus
ENSMUSG00000029439	Sfswap	96	53.320	ENSONIG00000003757	sfswap	99	51.992	Oreochromis_niloticus
ENSMUSG00000029439	Sfswap	51	78.732	ENSOANG00000013861	SFSWAP	100	81.984	Ornithorhynchus_anatinus
ENSMUSG00000029439	Sfswap	94	92.982	ENSOCUG00000002165	SFSWAP	100	84.298	Oryctolagus_cuniculus
ENSMUSG00000029439	Sfswap	67	77.778	ENSOMEG00000022065	sfswap	89	67.568	Oryzias_melastigma
ENSMUSG00000029439	Sfswap	94	90.351	ENSOGAG00000016724	SFSWAP	99	87.839	Otolemur_garnettii
ENSMUSG00000029439	Sfswap	100	86.947	ENSOARG00000014314	SFSWAP	100	86.737	Ovis_aries
ENSMUSG00000029439	Sfswap	100	88.118	ENSPPAG00000036706	SFSWAP	100	88.538	Pan_paniscus
ENSMUSG00000029439	Sfswap	94	87.719	ENSPTIG00000004304	SFSWAP	97	86.717	Panthera_tigris_altaica
ENSMUSG00000029439	Sfswap	100	87.907	ENSPTRG00000005640	SFSWAP	100	88.328	Pan_troglodytes
ENSMUSG00000029439	Sfswap	100	88.924	ENSPANG00000019737	SFSWAP	100	89.030	Papio_anubis
ENSMUSG00000029439	Sfswap	84	70.192	ENSPKIG00000008327	sfswap	100	54.018	Paramormyrops_kingsleyae
ENSMUSG00000029439	Sfswap	61	62.835	ENSPSIG00000017807	SFSWAP	86	65.568	Pelodiscus_sinensis
ENSMUSG00000029439	Sfswap	100	59.350	ENSPMGG00000008093	-	97	59.016	Periophthalmus_magnuspinnatus
ENSMUSG00000029439	Sfswap	100	96.089	ENSPEMG00000001237	Sfswap	100	96.089	Peromyscus_maniculatus_bairdii
ENSMUSG00000029439	Sfswap	71	75.581	ENSPMAG00000008279	sfswap	77	62.535	Petromyzon_marinus
ENSMUSG00000029439	Sfswap	94	60.526	ENSPLAG00000008513	sfswap	91	63.591	Poecilia_latipinna
ENSMUSG00000029439	Sfswap	94	60.526	ENSPREG00000006692	sfswap	92	62.935	Poecilia_reticulata
ENSMUSG00000029439	Sfswap	94	92.105	ENSPPYG00000005129	SFSWAP	100	88.210	Pongo_abelii
ENSMUSG00000029439	Sfswap	94	90.351	ENSPCAG00000004977	-	65	87.500	Procavia_capensis
ENSMUSG00000029439	Sfswap	100	87.658	ENSPCOG00000023786	SFSWAP	100	88.924	Propithecus_coquereli
ENSMUSG00000029439	Sfswap	94	89.474	ENSPVAG00000014918	SFSWAP	92	85.185	Pteropus_vampyrus
ENSMUSG00000029439	Sfswap	84	64.423	ENSPNYG00000012660	sfswap	53	66.938	Pundamilia_nyererei
ENSMUSG00000029439	Sfswap	100	95.661	ENSRNOG00000000931	Sfswap	99	99.119	Rattus_norvegicus
ENSMUSG00000029439	Sfswap	94	92.105	ENSRBIG00000036330	SFSWAP	100	83.228	Rhinopithecus_bieti
ENSMUSG00000029439	Sfswap	100	88.608	ENSRROG00000032001	SFSWAP	100	88.713	Rhinopithecus_roxellana
ENSMUSG00000029439	Sfswap	100	87.250	ENSSBOG00000026217	SFSWAP	100	87.625	Saimiri_boliviensis_boliviensis
ENSMUSG00000029439	Sfswap	92	80.678	ENSSHAG00000014232	SFSWAP	100	81.900	Sarcophilus_harrisii
ENSMUSG00000029439	Sfswap	67	75.309	ENSSMAG00000018718	sfswap	89	65.699	Scophthalmus_maximus
ENSMUSG00000029439	Sfswap	67	79.012	ENSSDUG00000021680	sfswap	53	67.192	Seriola_dumerili
ENSMUSG00000029439	Sfswap	67	79.012	ENSSLDG00000010835	sfswap	75	67.192	Seriola_lalandi_dorsalis
ENSMUSG00000029439	Sfswap	78	87.379	ENSSARG00000000424	SFSWAP	85	87.379	Sorex_araneus
ENSMUSG00000029439	Sfswap	87	73.735	ENSSPUG00000010272	SFSWAP	99	74.879	Sphenodon_punctatus
ENSMUSG00000029439	Sfswap	100	87.158	ENSSSCG00000009744	SFSWAP	100	87.368	Sus_scrofa
ENSMUSG00000029439	Sfswap	97	76.915	ENSTGUG00000004623	SFSWAP	99	76.923	Taeniopygia_guttata
ENSMUSG00000029439	Sfswap	89	64.815	ENSTNIG00000006156	-	99	60.494	Tetraodon_nigroviridis
ENSMUSG00000029439	Sfswap	54	90.625	ENSTBEG00000004983	-	66	90.625	Tupaia_belangeri
ENSMUSG00000029439	Sfswap	94	90.351	ENSTTRG00000013478	SFSWAP	93	91.627	Tursiops_truncatus
ENSMUSG00000029439	Sfswap	100	84.583	ENSUAMG00000016807	SFSWAP	100	84.884	Ursus_americanus
ENSMUSG00000029439	Sfswap	94	90.351	ENSUMAG00000002957	SFSWAP	91	85.995	Ursus_maritimus
ENSMUSG00000029439	Sfswap	94	89.474	ENSVPAG00000010479	-	65	90.244	Vicugna_pacos
ENSMUSG00000029439	Sfswap	100	86.047	ENSVVUG00000010753	SFSWAP	100	86.258	Vulpes_vulpes
ENSMUSG00000029439	Sfswap	84	63.208	ENSXCOG00000005131	sfswap	77	69.366	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000380	alternative mRNA splicing, via spliceosome	8940107.	IDA	Process
GO:0000395	mRNA 5'-splice site recognition	21873635.	IBA	Process
GO:0000395	mRNA 5'-splice site recognition	8940107.	IDA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005515	protein binding	26420826.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0048025	negative regulation of mRNA splicing, via spliceosome	-	ISO	Process