EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000029467 (Gene tree)
Gene ID: 11938
Gene Symbol: Atp2a2
Alias: 9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|sarco/endoplasmic reticulum Ca2+-ATPase 2
Full Name: ATPase%2C Ca++ transporting%2C cardiac muscle%2C slow twitch 2
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 48713
Position: chr5: 122453513-122502225
Accession: 88110
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000196490	-	698	-	-	- (aa)	-	-
ENSMUST00000179939	-	5674	-	ENSMUSP00000135935	1044 (aa)	-	O55143
ENSMUST00000031423	-	4486	-	ENSMUSP00000031423	1044 (aa)	-	O55143
ENSMUST00000197415	-	615	-	-	- (aa)	-	-
ENSMUST00000177974	-	3984	-	ENSMUSP00000136104	998 (aa)	-	O55143

Gene Model

Click here to download ENSMUSG00000029467's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04020	Calcium signaling pathway	KEGG
mmu04022	cGMP-PKG signaling pathway	KEGG
mmu04024	cAMP signaling pathway	KEGG
mmu04260	Cardiac muscle contraction	KEGG
mmu04261	Adrenergic signaling in cardiomyocytes	KEGG
mmu04919	Thyroid hormone signaling pathway	KEGG
mmu04972	Pancreatic secretion	KEGG
mmu05010	Alzheimer disease	KEGG
mmu05410	Hypertrophic cardiomyopathy (HCM)	KEGG
mmu05412	Arrhythmogenic right ventricular cardiomyopathy (ARVC)	KEGG
mmu05414	Dilated cardiomyopathy (DCM)	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029467's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029467	Atp2a2	100	98.898	ENSG00000174437	ATP2A2	100	98.898	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0002026	regulation of the force of heart contraction	10555147.	IGI	Process
GO:0005388	calcium-transporting ATPase activity	21873635.	IBA	Function
GO:0005388	calcium-transporting ATPase activity	9887021.12756243.	IDA	Function
GO:0005388	calcium-transporting ATPase activity	-	ISO	Function
GO:0005509	calcium ion binding	-	ISO	Function
GO:0005515	protein binding	15201433.16352659.17526652.23395171.25640239.	IPI	Function
GO:0005524	ATP binding	-	ISO	Function
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005783	endoplasmic reticulum	23395171.	IDA	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0005789	endoplasmic reticulum membrane	-	ISO	Component
GO:0006811	ion transport	-	IEA	Process
GO:0006816	calcium ion transport	-	ISO	Process
GO:0006874	cellular calcium ion homeostasis	21873635.	IBA	Process
GO:0006874	cellular calcium ion homeostasis	9887021.	IDA	Process
GO:0006874	cellular calcium ion homeostasis	12756243.	IGI	Process
GO:0006874	cellular calcium ion homeostasis	12756243.21106823.	IMP	Process
GO:0006874	cellular calcium ion homeostasis	-	ISO	Process
GO:0006937	regulation of muscle contraction	11784029.	TAS	Process
GO:0006984	ER-nucleus signaling pathway	14561754.	IMP	Process
GO:0006996	organelle organization	22355118.	IMP	Process
GO:0008022	protein C-terminus binding	14749390.	IPI	Function
GO:0008022	protein C-terminus binding	-	ISO	Function
GO:0008553	proton-exporting ATPase activity, phosphorylative mechanism	21873635.	IBA	Function
GO:0010882	regulation of cardiac muscle contraction by calcium ion signaling	21873635.	IBA	Process
GO:0010882	regulation of cardiac muscle contraction by calcium ion signaling	-	ISO	Process
GO:0012506	vesicle membrane	-	ISO	Component
GO:0014704	intercalated disc	-	ISO	Component
GO:0014801	longitudinal sarcoplasmic reticulum	-	ISO	Component
GO:0014883	transition between fast and slow fiber	18978355.	IDA	Process
GO:0014898	cardiac muscle hypertrophy in response to stress	24137001.	IDA	Process
GO:0016020	membrane	16407245.	IDA	Component
GO:0016020	membrane	22375059.	ISO	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0016529	sarcoplasmic reticulum	9038922.22355118.	IDA	Component
GO:0016529	sarcoplasmic reticulum	-	ISO	Component
GO:0016529	sarcoplasmic reticulum	11784029.	TAS	Component
GO:0019899	enzyme binding	21903937.	IPI	Function
GO:0019899	enzyme binding	-	ISO	Function
GO:0031234	extrinsic component of cytoplasmic side of plasma membrane	-	ISO	Component
GO:0031775	lutropin-choriogonadotropic hormone receptor binding	-	ISO	Function
GO:0032469	endoplasmic reticulum calcium ion homeostasis	-	ISO	Process
GO:0032470	positive regulation of endoplasmic reticulum calcium ion concentration	-	ISO	Process
GO:0032991	protein-containing complex	-	ISO	Component
GO:0033017	sarcoplasmic reticulum membrane	21873635.	IBA	Component
GO:0033292	T-tubule organization	22355118.	IMP	Process
GO:0034599	cellular response to oxidative stress	25452428.	IGI	Process
GO:0043434	response to peptide hormone	-	ISO	Process
GO:0044548	S100 protein binding	-	ISO	Function
GO:0045822	negative regulation of heart contraction	10555147.	IGI	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0055119	relaxation of cardiac muscle	-	ISO	Process
GO:0061831	apical ectoplasmic specialization	-	ISO	Component
GO:0070296	sarcoplasmic reticulum calcium ion transport	22355118.	IMP	Process
GO:0070296	sarcoplasmic reticulum calcium ion transport	-	ISO	Process
GO:0070588	calcium ion transmembrane transport	21873635.	IBA	Process
GO:0070588	calcium ion transmembrane transport	-	ISO	Process
GO:0086036	regulation of cardiac muscle cell membrane potential	-	ISO	Process
GO:0086039	calcium-transporting ATPase activity involved in regulation of cardiac muscle cell membrane potential	21873635.	IBA	Function
GO:0086039	calcium-transporting ATPase activity involved in regulation of cardiac muscle cell membrane potential	-	ISO	Function
GO:0090534	calcium ion-transporting ATPase complex	-	ISO	Component
GO:0097470	ribbon synapse	19932743.	IDA	Component
GO:0098909	regulation of cardiac muscle cell action potential involved in regulation of contraction	-	ISO	Process
GO:0120025	plasma membrane bounded cell projection	-	ISO	Component
GO:1903233	regulation of calcium ion-dependent exocytosis of neurotransmitter	21106823.	IMP	Process
GO:1903515	calcium ion transport from cytosol to endoplasmic reticulum	-	ISO	Process
GO:1990036	calcium ion import into sarcoplasmic reticulum	-	ISO	Process