EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000029478 (Gene tree)
Gene ID: 20602
Gene Symbol: Ncor2
Alias: SMRT|SMRTe
Full Name: nuclear receptor co-repressor 2
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 162067
Position: chr5: 125017153-125179219
Accession: 1337080
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000130742	-	683	-	-	- (aa)	-	-
ENSMUST00000111398	-	8808	XM_011240831	ENSMUSP00000107029	2472 (aa)	XP_011239133	Q9WU42
ENSMUST00000055256	-	7780	XM_011240826	ENSMUSP00000055954	2473 (aa)	XP_011239128	E9Q701
ENSMUST00000111402	-	8862	XM_006504282	ENSMUSP00000107033	2507 (aa)	XP_006504345	F8VQL9
ENSMUST00000111394	-	7452	-	ENSMUSP00000107025	2253 (aa)	-	Q9WU42
ENSMUST00000125053	-	5672	XM_017320761	ENSMUSP00000117098	1552 (aa)	XP_017176250	F6Z4B2
ENSMUST00000111393	-	8661	XM_011240834	ENSMUSP00000107024	2332 (aa)	XP_011239136	E9Q9V3
ENSMUST00000138890	-	1285	-	ENSMUSP00000117813	336 (aa)	-	F6YAU7
ENSMUST00000200297	-	884	-	ENSMUSP00000142725	44 (aa)	-	A0A0G2JED1
ENSMUST00000199561	-	832	-	ENSMUSP00000142862	102 (aa)	-	A0A0G2JEQ5
ENSMUST00000134819	-	643	-	ENSMUSP00000115776	214 (aa)	-	F6SK53
ENSMUST00000149968	-	1191	-	-	- (aa)	-	-
ENSMUST00000134404	-	3589	-	ENSMUSP00000121588	1025 (aa)	-	D3Z2J5
ENSMUST00000144354	-	646	-	-	- (aa)	-	-
ENSMUST00000086083	-	8575	XM_011240833	ENSMUSP00000083250	2468 (aa)	XP_011239135	E9PY55

Gene Model

Click here to download ENSMUSG00000029478's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04330	Notch signaling pathway	KEGG
mmu05169	Epstein-Barr virus infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029478's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029478	Ncor2	100	96.774	ENSG00000196498	NCOR2	100	94.929	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000118	histone deacetylase complex	21873635.	IBA	Component
GO:0000118	histone deacetylase complex	15832170.	IDA	Component
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	10077563.	IDA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	17158926.18347093.	IGI	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	17928865.19299558.	IMP	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000785	chromatin	-	ISO	Component
GO:0000790	nuclear chromatin	21873635.	IBA	Component
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0001012	RNA polymerase II regulatory region DNA binding	21873635.	IBA	Function
GO:0001012	RNA polymerase II regulatory region DNA binding	-	ISO	Function
GO:0001701	in utero embryonic development	17928865.	IMP	Process
GO:0003007	heart morphogenesis	18347093.	IGI	Process
GO:0003007	heart morphogenesis	18347093.	IMP	Process
GO:0003677	DNA binding	15681609.	IDA	Function
GO:0003682	chromatin binding	21873635.	IBA	Function
GO:0003682	chromatin binding	15832170.18347093.19066220.	IDA	Function
GO:0003682	chromatin binding	-	ISO	Function
GO:0003714	transcription corepressor activity	21873635.	IBA	Function
GO:0003714	transcription corepressor activity	19144721.	IDA	Function
GO:0003714	transcription corepressor activity	18347093.	IGI	Function
GO:0003714	transcription corepressor activity	15870285.	IMP	Function
GO:0003714	transcription corepressor activity	-	ISO	Function
GO:0005112	Notch binding	-	ISO	Function
GO:0005515	protein binding	10640276.11702949.15681609.15778499.15870285.16924111.18347093.19144721.23770565.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0016363	nuclear matrix	-	ISO	Component
GO:0016604	nuclear body	11641275.	IDA	Component
GO:0016604	nuclear body	-	ISO	Component
GO:0016922	nuclear receptor binding	-	ISO	Function
GO:0017053	transcriptional repressor complex	21873635.	IBA	Component
GO:0017053	transcriptional repressor complex	-	ISO	Component
GO:0021537	telencephalon development	17928865.	IMP	Process
GO:0021846	cell proliferation in forebrain	17928865.	IMP	Process
GO:0030900	forebrain development	17928865.	IMP	Process
GO:0035257	nuclear hormone receptor binding	21873635.	IBA	Function
GO:0035259	glucocorticoid receptor binding	-	ISO	Function
GO:0042593	glucose homeostasis	19066220.	IMP	Process
GO:0042826	histone deacetylase binding	21873635.	IBA	Function
GO:0042826	histone deacetylase binding	-	ISO	Function
GO:0042974	retinoic acid receptor binding	-	ISO	Function
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0043565	sequence-specific DNA binding	17928865.	IDA	Function
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0045599	negative regulation of fat cell differentiation	19066220.	IMP	Process
GO:0045892	negative regulation of transcription, DNA-templated	15681609.	IDA	Process
GO:0045892	negative regulation of transcription, DNA-templated	15870285.	IMP	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0046965	retinoid X receptor binding	-	ISO	Function
GO:0047485	protein N-terminus binding	-	ISO	Function
GO:0050872	white fat cell differentiation	19066220.	IMP	Process
GO:0060509	type I pneumocyte differentiation	22001906.	IGI	Process
GO:0060509	type I pneumocyte differentiation	22001906.	IMP	Process
GO:0060766	negative regulation of androgen receptor signaling pathway	-	ISO	Process
GO:0072365	regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter	-	ISO	Process
GO:0090312	positive regulation of protein deacetylation	17158926.	IDA	Process
GO:1903799	negative regulation of production of miRNAs involved in gene silencing by miRNA	-	ISO	Process