EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000029486 (Gene tree)
Gene ID: 94061
Gene Symbol: Mrpl1
Alias: 2410002L03Rik|5830418D04Rik
Full Name: mitochondrial ribosomal protein L1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 57235 bases
Position: chr5:96209493-96266727
Accession: 2137202
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000037046	Ribosomal_L1	PF00687.21	9.8e-17	1	1
ENSMUSP00000112977	Ribosomal_L1	PF00687.21	9.8e-17	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000036437	-	3431	XM_011249596	ENSMUSP00000037046	336 (aa)	XP_011247898	Q99N96
ENSMUST00000117766	-	3556	XM_006535292	ENSMUSP00000112977	336 (aa)	XP_006535355	Q99N96
ENSMUST00000121477	-	1550	-	ENSMUSP00000112451	276 (aa)	-	Q9D3F3

Gene Model

Click here to download ENSMUSG00000029486's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03010	Ribosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029486's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029486	Mrpl1	98	77.508	ENSG00000169288	MRPL1	96	79.180	Homo_sapiens
ENSMUSG00000029486	Mrpl1	78	50.000	ENSAPOG00000005831	mrpl1	85	48.872	Acanthochromis_polyacanthus
ENSMUSG00000029486	Mrpl1	85	48.951	ENSACIG00000002298	mrpl1	87	50.575	Amphilophus_citrinellus
ENSMUSG00000029486	Mrpl1	78	49.618	ENSAOCG00000006715	mrpl1	97	44.479	Amphiprion_ocellaris
ENSMUSG00000029486	Mrpl1	78	50.000	ENSAPEG00000020020	mrpl1	89	48.872	Amphiprion_percula
ENSMUSG00000029486	Mrpl1	96	45.794	ENSATEG00000008760	mrpl1	97	46.082	Anabas_testudineus
ENSMUSG00000029486	Mrpl1	66	56.306	ENSAPLG00000003428	MRPL1	84	57.082	Anas_platyrhynchos
ENSMUSG00000029486	Mrpl1	94	47.500	ENSACAG00000012069	MRPL1	80	47.188	Anolis_carolinensis
ENSMUSG00000029486	Mrpl1	98	75.380	ENSANAG00000035463	-	96	76.025	Aotus_nancymaae
ENSMUSG00000029486	Mrpl1	97	64.308	ENSANAG00000020317	-	94	66.454	Aotus_nancymaae
ENSMUSG00000029486	Mrpl1	96	46.626	ENSACLG00000001464	mrpl1	86	47.022	Astatotilapia_calliptera
ENSMUSG00000029486	Mrpl1	79	46.591	ENSAMXG00000033077	mrpl1	98	42.941	Astyanax_mexicanus
ENSMUSG00000029486	Mrpl1	95	78.056	ENSCPOG00000031686	MRPL1	97	77.918	Cavia_porcellus
ENSMUSG00000029486	Mrpl1	99	75.075	ENSCLAG00000005041	MRPL1	96	77.918	Chinchilla_lanigera
ENSMUSG00000029486	Mrpl1	98	69.817	ENSCANG00000033966	MRPL1	96	70.662	Colobus_angolensis_palliatus
ENSMUSG00000029486	Mrpl1	97	85.321	ENSCGRG00001005376	-	97	85.893	Cricetulus_griseus_chok1gshd
ENSMUSG00000029486	Mrpl1	97	85.015	ENSCGRG00000003658	-	97	85.580	Cricetulus_griseus_crigri
ENSMUSG00000029486	Mrpl1	95	39.812	ENSCSEG00000014014	mrpl1	97	39.748	Cynoglossus_semilaevis
ENSMUSG00000029486	Mrpl1	96	44.343	ENSCVAG00000021636	mrpl1	98	44.548	Cyprinodon_variegatus
ENSMUSG00000029486	Mrpl1	96	44.099	ENSDARG00000054606	mrpl1	96	44.025	Danio_rerio
ENSMUSG00000029486	Mrpl1	98	76.829	ENSDNOG00000001665	MRPL1	95	78.233	Dasypus_novemcinctus
ENSMUSG00000029486	Mrpl1	99	75.224	ENSDORG00000015752	Mrpl1	93	77.287	Dipodomys_ordii
ENSMUSG00000029486	Mrpl1	78	33.716	ENSEBUG00000004815	mrpl1	78	33.594	Eptatretus_burgeri
ENSMUSG00000029486	Mrpl1	99	43.544	ENSELUG00000013391	mrpl1	97	44.620	Esox_lucius
ENSMUSG00000029486	Mrpl1	98	76.292	ENSFCAG00000013776	MRPL1	96	77.603	Felis_catus
ENSMUSG00000029486	Mrpl1	71	52.917	ENSFALG00000008527	MRPL1	81	54.077	Ficedula_albicollis
ENSMUSG00000029486	Mrpl1	95	76.730	ENSFDAG00000011113	MRPL1	96	76.656	Fukomys_damarensis
ENSMUSG00000029486	Mrpl1	96	44.136	ENSFHEG00000012375	mrpl1	98	45.110	Fundulus_heteroclitus
ENSMUSG00000029486	Mrpl1	91	46.254	ENSGALG00000010324	MRPL1	91	46.250	Gallus_gallus
ENSMUSG00000029486	Mrpl1	76	50.394	ENSGAFG00000006089	mrpl1	84	44.099	Gambusia_affinis
ENSMUSG00000029486	Mrpl1	95	55.280	ENSGAGG00000015092	MRPL1	95	55.140	Gopherus_agassizii
ENSMUSG00000029486	Mrpl1	98	77.204	ENSGGOG00000001304	MRPL1	96	78.864	Gorilla_gorilla
ENSMUSG00000029486	Mrpl1	96	45.988	ENSHBUG00000004985	mrpl1	98	47.649	Haplochromis_burtoni
ENSMUSG00000029486	Mrpl1	99	74.775	ENSHGLG00000006127	MRPL1	97	77.603	Heterocephalus_glaber_female
ENSMUSG00000029486	Mrpl1	99	74.775	ENSHGLG00100004303	MRPL1	97	77.603	Heterocephalus_glaber_male
ENSMUSG00000029486	Mrpl1	75	45.817	ENSIPUG00000009866	mrpl1	93	44.526	Ictalurus_punctatus
ENSMUSG00000029486	Mrpl1	95	79.624	ENSSTOG00000001415	MRPL1	94	81.818	Ictidomys_tridecemlineatus
ENSMUSG00000029486	Mrpl1	96	73.846	ENSJJAG00000012571	Mrpl1	94	75.159	Jaculus_jaculus
ENSMUSG00000029486	Mrpl1	95	43.887	ENSKMAG00000004236	mrpl1	99	44.025	Kryptolebias_marmoratus
ENSMUSG00000029486	Mrpl1	64	50.463	ENSLBEG00000017454	-	92	43.793	Labrus_bergylta
ENSMUSG00000029486	Mrpl1	69	48.927	ENSLBEG00000013686	-	80	48.908	Labrus_bergylta
ENSMUSG00000029486	Mrpl1	96	48.287	ENSLACG00000008208	MRPL1	93	49.032	Latimeria_chalumnae
ENSMUSG00000029486	Mrpl1	95	47.975	ENSLOCG00000007408	mrpl1	97	47.812	Lepisosteus_oculatus
ENSMUSG00000029486	Mrpl1	63	80.745	ENSMFAG00000030593	MRPL1	92	84.000	Macaca_fascicularis
ENSMUSG00000029486	Mrpl1	85	75.439	ENSMLEG00000030203	MRPL1	93	78.195	Mandrillus_leucophaeus
ENSMUSG00000029486	Mrpl1	96	47.546	ENSMAMG00000016943	mrpl1	98	47.335	Mastacembelus_armatus
ENSMUSG00000029486	Mrpl1	96	46.933	ENSMZEG00005020288	mrpl1	98	47.335	Maylandia_zebra
ENSMUSG00000029486	Mrpl1	75	50.397	ENSMGAG00000005136	MRPL1	93	51.331	Meleagris_gallopavo
ENSMUSG00000029486	Mrpl1	84	70.526	ENSMAUG00000019228	Mrpl1	92	72.285	Mesocricetus_auratus
ENSMUSG00000029486	Mrpl1	72	80.247	ENSMICG00000032729	-	94	80.247	Microcebus_murinus
ENSMUSG00000029486	Mrpl1	97	85.933	ENSMOCG00000017395	Mrpl1	97	86.520	Microtus_ochrogaster
ENSMUSG00000029486	Mrpl1	83	65.480	ENSMODG00000011704	MRPL1	93	68.165	Monodelphis_domestica
ENSMUSG00000029486	Mrpl1	96	44.985	ENSMALG00000006393	mrpl1	97	44.548	Monopterus_albus
ENSMUSG00000029486	Mrpl1	94	95.899	MGP_PahariEiJ_G0017208	Mrpl1	94	95.899	Mus_pahari
ENSMUSG00000029486	Mrpl1	100	98.512	MGP_SPRETEiJ_G0028427	Mrpl1	100	98.512	Mus_spretus
ENSMUSG00000029486	Mrpl1	91	77.778	ENSMPUG00000006794	MRPL1	93	79.739	Mustela_putorius_furo
ENSMUSG00000029486	Mrpl1	92	80.906	ENSNGAG00000015669	Mrpl1	96	80.844	Nannospalax_galili
ENSMUSG00000029486	Mrpl1	78	50.951	ENSNBRG00000016660	mrpl1	80	51.562	Neolamprologus_brichardi
ENSMUSG00000029486	Mrpl1	95	72.956	ENSODEG00000004206	MRPL1	97	73.502	Octodon_degus
ENSMUSG00000029486	Mrpl1	95	47.516	ENSONIG00000014024	mrpl1	97	47.352	Oreochromis_niloticus
ENSMUSG00000029486	Mrpl1	83	65.950	ENSOANG00000003564	MRPL1	93	68.061	Ornithorhynchus_anatinus
ENSMUSG00000029486	Mrpl1	96	80.556	ENSOCUG00000003852	MRPL1	96	82.019	Oryctolagus_cuniculus
ENSMUSG00000029486	Mrpl1	82	45.683	ENSORLG00000018859	mrpl1	79	46.970	Oryzias_latipes
ENSMUSG00000029486	Mrpl1	78	46.388	ENSOMEG00000010049	mrpl1	89	45.645	Oryzias_melastigma
ENSMUSG00000029486	Mrpl1	88	76.610	ENSOGAG00000012126	MRPL1	96	78.644	Otolemur_garnettii
ENSMUSG00000029486	Mrpl1	98	77.508	ENSPPAG00000041378	MRPL1	96	79.180	Pan_paniscus
ENSMUSG00000029486	Mrpl1	98	76.292	ENSPPRG00000009221	MRPL1	96	77.603	Panthera_pardus
ENSMUSG00000029486	Mrpl1	98	76.596	ENSPTIG00000015465	MRPL1	96	77.918	Panthera_tigris_altaica
ENSMUSG00000029486	Mrpl1	98	77.508	ENSPTRG00000016199	MRPL1	96	79.180	Pan_troglodytes
ENSMUSG00000029486	Mrpl1	98	75.305	ENSPANG00000007832	MRPL1	96	76.341	Papio_anubis
ENSMUSG00000029486	Mrpl1	97	44.713	ENSPKIG00000019299	mrpl1	96	44.548	Paramormyrops_kingsleyae
ENSMUSG00000029486	Mrpl1	68	62.115	ENSPSIG00000015906	MRPL1	92	63.462	Pelodiscus_sinensis
ENSMUSG00000029486	Mrpl1	74	49.603	ENSPMGG00000004020	mrpl1	83	47.636	Periophthalmus_magnuspinnatus
ENSMUSG00000029486	Mrpl1	97	85.015	ENSPEMG00000018072	-	97	85.580	Peromyscus_maniculatus_bairdii
ENSMUSG00000029486	Mrpl1	96	59.692	ENSPCIG00000029496	-	92	61.538	Phascolarctos_cinereus
ENSMUSG00000029486	Mrpl1	96	44.444	ENSPFOG00000013095	mrpl1	96	44.410	Poecilia_formosa
ENSMUSG00000029486	Mrpl1	76	50.394	ENSPLAG00000019871	mrpl1	81	48.855	Poecilia_latipinna
ENSMUSG00000029486	Mrpl1	96	44.444	ENSPMEG00000015846	mrpl1	98	44.410	Poecilia_mexicana
ENSMUSG00000029486	Mrpl1	96	43.827	ENSPREG00000003524	mrpl1	98	44.099	Poecilia_reticulata
ENSMUSG00000029486	Mrpl1	98	75.380	ENSPPYG00000014870	MRPL1	96	78.233	Pongo_abelii
ENSMUSG00000029486	Mrpl1	96	44.753	ENSPNYG00000006464	mrpl1	96	46.395	Pundamilia_nyererei
ENSMUSG00000029486	Mrpl1	94	45.062	ENSPNAG00000018662	mrpl1	95	45.016	Pygocentrus_nattereri
ENSMUSG00000029486	Mrpl1	97	90.769	ENSRNOG00000002070	Mrpl1	98	92.429	Rattus_norvegicus
ENSMUSG00000029486	Mrpl1	96	91.304	ENSRNOG00000045785	LOC100359687	97	93.485	Rattus_norvegicus
ENSMUSG00000029486	Mrpl1	98	74.695	ENSRBIG00000040801	MRPL1	96	76.025	Rhinopithecus_bieti
ENSMUSG00000029486	Mrpl1	98	75.000	ENSRROG00000041586	MRPL1	96	76.341	Rhinopithecus_roxellana
ENSMUSG00000029486	Mrpl1	98	62.236	ENSSHAG00000001696	MRPL1	96	63.522	Sarcophilus_harrisii
ENSMUSG00000029486	Mrpl1	95	41.590	ENSSFOG00015014444	mrpl1	98	42.331	Scleropages_formosus
ENSMUSG00000029486	Mrpl1	96	44.548	ENSSMAG00000015530	mrpl1	97	45.938	Scophthalmus_maximus
ENSMUSG00000029486	Mrpl1	76	49.219	ENSSDUG00000018458	mrpl1	97	43.533	Seriola_dumerili
ENSMUSG00000029486	Mrpl1	97	43.252	ENSSLDG00000000399	mrpl1	90	43.533	Seriola_lalandi_dorsalis
ENSMUSG00000029486	Mrpl1	69	58.190	ENSSPUG00000002005	MRPL1	87	53.558	Sphenodon_punctatus
ENSMUSG00000029486	Mrpl1	88	41.497	ENSSPAG00000022922	mrpl1	87	42.517	Stegastes_partitus
ENSMUSG00000029486	Mrpl1	70	52.991	ENSTGUG00000001739	MRPL1	81	49.810	Taeniopygia_guttata
ENSMUSG00000029486	Mrpl1	95	46.106	ENSTRUG00000004229	mrpl1	84	50.373	Takifugu_rubripes
ENSMUSG00000029486	Mrpl1	96	45.231	ENSTNIG00000016716	mrpl1	97	45.426	Tetraodon_nigroviridis
ENSMUSG00000029486	Mrpl1	97	76.074	ENSUMAG00000007973	MRPL1	95	83.398	Ursus_maritimus
ENSMUSG00000029486	Mrpl1	97	44.118	ENSXETG00000000373	mrpl1	94	44.242	Xenopus_tropicalis
ENSMUSG00000029486	Mrpl1	96	44.444	ENSXMAG00000002920	mrpl1	98	44.479	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000470	maturation of LSU-rRNA	21873635.	IBA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003735	structural constituent of ribosome	-	ISO	Function
GO:0005739	mitochondrion	18614015.	HDA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005762	mitochondrial large ribosomal subunit	-	ISO	Component
GO:0005840	ribosome	-	IEA	Component
GO:0006412	translation	-	ISO	Process
GO:0015934	large ribosomal subunit	-	IEA	Component
GO:0022625	cytosolic large ribosomal subunit	21873635.	IBA	Component