EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000029505 (Gene tree)
Gene ID: 75560
Gene Symbol: Ep400
Alias: 1700020J09Rik|mDomino|p400
Full Name: E1A binding protein p400
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 106345
Position: chr5: 110664373-110770717
Accession: 1276124
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000141986	-	627	-	-	- (aa)	-	-
ENSMUST00000129884	-	729	-	-	- (aa)	-	-
ENSMUST00000146458	-	3673	-	ENSMUSP00000138369	649 (aa)	-	Q641K9
ENSMUST00000122901	-	826	-	-	- (aa)	-	-
ENSMUST00000125325	-	974	-	ENSMUSP00000116137	325 (aa)	-	F6R9G0
ENSMUST00000144581	-	371	-	-	- (aa)	-	-
ENSMUST00000112433	-	3399	-	ENSMUSP00000108052	686 (aa)	-	D3Z6R8
ENSMUST00000112436	-	10685	XM_017321132	ENSMUSP00000108055	2999 (aa)	XP_017176621	Q8CHI8
ENSMUST00000146652	-	394	-	-	- (aa)	-	-
ENSMUST00000112435	-	10420	-	ENSMUSP00000108054	2909 (aa)	-	Q8CHI8
ENSMUST00000041558	-	10608	XM_006535265	ENSMUSP00000049038	3035 (aa)	XP_006535328	Q8CHI8

Gene Model

Click here to download ENSMUSG00000029505's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029505's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029505	Ep400	99	85.507	ENSG00000183495	EP400	95	89.694	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000812	Swr1 complex	-	ISO	Component
GO:0003677	DNA binding	-	IEA	Function
GO:0003682	chromatin binding	-	ISO	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005515	protein binding	18758164.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0016607	nuclear speck	18758164.	IDA	Component
GO:0016787	hydrolase activity	-	IEA	Function
GO:0035267	NuA4 histone acetyltransferase complex	-	ISO	Component
GO:0043967	histone H4 acetylation	-	ISO	Process
GO:0043968	histone H2A acetylation	-	ISO	Process
GO:1990405	protein antigen binding	-	ISO	Function