EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000029507 (Gene tree)
Gene ID: 56361
Gene Symbol: Pus1
Alias: A730013B20Rik|MPUS1|mPus1p
Full Name: pseudouridine synthase 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 6993 bases
Position: chr5:110773667-110780659
Accession: 1929237
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000031481	PseudoU_synth_1	PF01416.20	1.3e-14	1	1
ENSMUSP00000130814	PseudoU_synth_1	PF01416.20	1.3e-14	1	1
ENSMUSP00000031483	PseudoU_synth_1	PF01416.20	1.7e-14	1	1
ENSMUSP00000108045	PseudoU_synth_1	PF01416.20	2.4e-13	1	1
ENSMUSP00000083844	PseudoU_synth_1	PF01416.20	3.1e-13	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000086643	-	1868	-	ENSMUSP00000083844	441 (aa)	-	H7BX59
ENSMUST00000136483	-	701	-	ENSMUSP00000115143	147 (aa)	-	D3YWU8
ENSMUST00000112426	-	1389	XM_006535149	ENSMUSP00000108045	347 (aa)	XP_006535212	Q9WU56
ENSMUST00000031483	-	1814	XM_006535148	ENSMUSP00000031483	423 (aa)	XP_006535211	Q9WU56
ENSMUST00000170468	-	1510	-	ENSMUSP00000130814	393 (aa)	-	Q9WU56
ENSMUST00000031481	-	1563	XM_011249545	ENSMUSP00000031481	393 (aa)	XP_011247847	Q9WU56
ENSMUST00000149208	-	527	-	ENSMUSP00000115468	162 (aa)	-	D3Z092

Gene Model

Click here to download ENSMUSG00000029507's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029507's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029507	Pus1	100	86.466	ENSG00000177192	PUS1	100	86.466	Homo_sapiens
ENSMUSG00000029507	Pus1	93	68.022	ENSAPOG00000007254	pus1	87	68.022	Acanthochromis_polyacanthus
ENSMUSG00000029507	Pus1	99	82.864	ENSAMEG00000013715	PUS1	100	79.810	Ailuropoda_melanoleuca
ENSMUSG00000029507	Pus1	89	68.715	ENSACIG00000009169	pus1	87	68.715	Amphilophus_citrinellus
ENSMUSG00000029507	Pus1	92	69.672	ENSAOCG00000022207	pus1	87	69.672	Amphiprion_ocellaris
ENSMUSG00000029507	Pus1	89	71.510	ENSAPEG00000006039	pus1	90	71.510	Amphiprion_percula
ENSMUSG00000029507	Pus1	89	69.231	ENSATEG00000020688	pus1	90	69.231	Anabas_testudineus
ENSMUSG00000029507	Pus1	88	78.324	ENSACAG00000007367	PUS1	93	78.324	Anolis_carolinensis
ENSMUSG00000029507	Pus1	83	91.104	ENSANAG00000036192	PUS1	100	91.104	Aotus_nancymaae
ENSMUSG00000029507	Pus1	93	68.564	ENSACLG00000020868	pus1	94	68.564	Astatotilapia_calliptera
ENSMUSG00000029507	Pus1	88	72.046	ENSAMXG00000008710	pus1	81	72.046	Astyanax_mexicanus
ENSMUSG00000029507	Pus1	100	82.750	ENSBTAG00000012990	PUS1	100	82.750	Bos_taurus
ENSMUSG00000029507	Pus1	85	38.040	WBGene00004248	pus-1	82	38.040	Caenorhabditis_elegans
ENSMUSG00000029507	Pus1	74	91.860	ENSCJAG00000003720	PUS1	74	90.775	Callithrix_jacchus
ENSMUSG00000029507	Pus1	99	80.846	ENSCAFG00000006429	PUS1	100	80.905	Canis_familiaris
ENSMUSG00000029507	Pus1	98	80.905	ENSCAFG00020010737	PUS1	100	77.726	Canis_lupus_dingo
ENSMUSG00000029507	Pus1	100	83.797	ENSCHIG00000000487	PUS1	100	82.750	Capra_hircus
ENSMUSG00000029507	Pus1	94	88.076	ENSTSYG00000032605	PUS1	100	88.076	Carlito_syrichta
ENSMUSG00000029507	Pus1	76	92.282	ENSCAPG00000006421	PUS1	100	88.889	Cavia_aperea
ENSMUSG00000029507	Pus1	99	84.304	ENSCPOG00000001027	PUS1	100	84.928	Cavia_porcellus
ENSMUSG00000029507	Pus1	100	84.500	ENSCCAG00000015879	PUS1	100	81.628	Cebus_capucinus
ENSMUSG00000029507	Pus1	100	86.717	ENSCATG00000032870	PUS1	99	85.036	Cercocebus_atys
ENSMUSG00000029507	Pus1	50	30.102	ENSCLAG00000005232	PUSL1	63	30.208	Chinchilla_lanigera
ENSMUSG00000029507	Pus1	99	85.063	ENSCLAG00000011689	PUS1	100	84.814	Chinchilla_lanigera
ENSMUSG00000029507	Pus1	100	87.218	ENSCSAG00000001879	PUS1	99	85.511	Chlorocebus_sabaeus
ENSMUSG00000029507	Pus1	79	80.645	ENSCPBG00000024715	PUS1	93	77.711	Chrysemys_picta_bellii
ENSMUSG00000029507	Pus1	90	43.855	ENSCING00000009426	-	95	43.855	Ciona_intestinalis
ENSMUSG00000029507	Pus1	82	43.478	ENSCSAVG00000003751	-	66	43.478	Ciona_savignyi
ENSMUSG00000029507	Pus1	100	78.446	ENSCANG00000035561	PUS1	99	78.446	Colobus_angolensis_palliatus
ENSMUSG00000029507	Pus1	100	95.674	ENSCGRG00001019592	Pus1	100	95.508	Cricetulus_griseus_chok1gshd
ENSMUSG00000029507	Pus1	100	95.674	ENSCGRG00000004048	Pus1	100	95.674	Cricetulus_griseus_crigri
ENSMUSG00000029507	Pus1	91	68.245	ENSCSEG00000003629	pus1	92	64.872	Cynoglossus_semilaevis
ENSMUSG00000029507	Pus1	93	68.120	ENSCVAG00000001265	pus1	89	68.120	Cyprinodon_variegatus
ENSMUSG00000029507	Pus1	89	67.816	ENSDARG00000045562	pus1	99	67.626	Danio_rerio
ENSMUSG00000029507	Pus1	67	30.195	ENSDARG00000028976	pus3	60	30.195	Danio_rerio
ENSMUSG00000029507	Pus1	93	79.508	ENSDNOG00000045576	PUS1	98	82.298	Dasypus_novemcinctus
ENSMUSG00000029507	Pus1	83	94.479	ENSDORG00000011455	Pus1	100	94.479	Dipodomys_ordii
ENSMUSG00000029507	Pus1	90	45.634	FBgn0038811	PUS1	84	45.634	Drosophila_melanogaster
ENSMUSG00000029507	Pus1	90	80.112	ENSETEG00000019160	PUS1	100	74.217	Echinops_telfairi
ENSMUSG00000029507	Pus1	81	43.440	ENSEBUG00000000368	-	63	43.440	Eptatretus_burgeri
ENSMUSG00000029507	Pus1	100	84.080	ENSEASG00005016535	PUS1	100	81.609	Equus_asinus_asinus
ENSMUSG00000029507	Pus1	100	84.577	ENSECAG00000006965	PUS1	100	84.577	Equus_caballus
ENSMUSG00000029507	Pus1	51	30.500	ENSECAG00000006248	PUSL1	73	30.131	Equus_caballus
ENSMUSG00000029507	Pus1	88	70.977	ENSELUG00000010424	pus1	89	70.977	Esox_lucius
ENSMUSG00000029507	Pus1	99	80.964	ENSFCAG00000010780	PUS1	97	78.846	Felis_catus
ENSMUSG00000029507	Pus1	93	79.032	ENSFALG00000008273	PUS1	87	79.032	Ficedula_albicollis
ENSMUSG00000029507	Pus1	94	88.472	ENSFDAG00000012518	PUS1	100	84.397	Fukomys_damarensis
ENSMUSG00000029507	Pus1	93	68.392	ENSFHEG00000010504	pus1	88	68.392	Fundulus_heteroclitus
ENSMUSG00000029507	Pus1	92	65.746	ENSGMOG00000008143	pus1	97	63.613	Gadus_morhua
ENSMUSG00000029507	Pus1	98	76.471	ENSGALG00000002354	PUS1	95	76.471	Gallus_gallus
ENSMUSG00000029507	Pus1	93	68.120	ENSGAFG00000006578	pus1	88	68.120	Gambusia_affinis
ENSMUSG00000029507	Pus1	93	63.889	ENSGACG00000017566	pus1	100	63.889	Gasterosteus_aculeatus
ENSMUSG00000029507	Pus1	89	72.934	ENSGAGG00000016730	-	94	76.506	Gopherus_agassizii
ENSMUSG00000029507	Pus1	100	86.216	ENSGGOG00000009178	PUS1	99	84.561	Gorilla_gorilla
ENSMUSG00000029507	Pus1	93	68.835	ENSHBUG00000001316	pus1	94	68.835	Haplochromis_burtoni
ENSMUSG00000029507	Pus1	99	84.399	ENSHGLG00000016086	PUS1	100	84.399	Heterocephalus_glaber_female
ENSMUSG00000029507	Pus1	99	83.887	ENSHGLG00100019362	PUS1	100	83.887	Heterocephalus_glaber_male
ENSMUSG00000029507	Pus1	87	70.725	ENSHCOG00000014288	pus1	80	70.725	Hippocampus_comes
ENSMUSG00000029507	Pus1	88	73.333	ENSIPUG00000010387	pus1	87	73.333	Ictalurus_punctatus
ENSMUSG00000029507	Pus1	97	89.817	ENSSTOG00000011245	PUS1	99	88.416	Ictidomys_tridecemlineatus
ENSMUSG00000029507	Pus1	100	91.094	ENSJJAG00000000088	Pus1	100	90.490	Jaculus_jaculus
ENSMUSG00000029507	Pus1	93	67.302	ENSKMAG00000012702	pus1	88	67.302	Kryptolebias_marmoratus
ENSMUSG00000029507	Pus1	93	66.129	ENSLBEG00000002845	pus1	92	66.129	Labrus_bergylta
ENSMUSG00000029507	Pus1	82	57.632	ENSLACG00000016044	-	97	57.632	Latimeria_chalumnae
ENSMUSG00000029507	Pus1	89	76.000	ENSLACG00000018598	PUS1	92	73.046	Latimeria_chalumnae
ENSMUSG00000029507	Pus1	98	71.762	ENSLOCG00000006127	pus1	97	71.762	Lepisosteus_oculatus
ENSMUSG00000029507	Pus1	94	81.132	ENSLAFG00000028731	PUS1	100	81.132	Loxodonta_africana
ENSMUSG00000029507	Pus1	100	87.218	ENSMFAG00000041194	PUS1	99	87.218	Macaca_fascicularis
ENSMUSG00000029507	Pus1	100	85.000	ENSMMUG00000031463	PUS1	99	86.979	Macaca_mulatta
ENSMUSG00000029507	Pus1	100	86.967	ENSMNEG00000002814	PUS1	99	85.273	Macaca_nemestrina
ENSMUSG00000029507	Pus1	83	92.025	ENSMLEG00000043560	PUS1	100	92.025	Mandrillus_leucophaeus
ENSMUSG00000029507	Pus1	87	69.883	ENSMAMG00000007371	pus1	81	69.883	Mastacembelus_armatus
ENSMUSG00000029507	Pus1	93	68.835	ENSMZEG00005017746	pus1	87	68.835	Maylandia_zebra
ENSMUSG00000029507	Pus1	83	81.155	ENSMGAG00000001958	PUS1	100	81.155	Meleagris_gallopavo
ENSMUSG00000029507	Pus1	63	30.337	ENSMGAG00000000851	PUS3	63	30.337	Meleagris_gallopavo
ENSMUSG00000029507	Pus1	100	95.674	ENSMAUG00000001482	Pus1	100	95.508	Mesocricetus_auratus
ENSMUSG00000029507	Pus1	100	83.871	ENSMICG00000030980	PUS1	100	83.871	Microcebus_murinus
ENSMUSG00000029507	Pus1	100	96.183	ENSMOCG00000022311	Pus1	100	95.981	Microtus_ochrogaster
ENSMUSG00000029507	Pus1	94	67.209	ENSMMOG00000021022	pus1	94	67.209	Mola_mola
ENSMUSG00000029507	Pus1	95	78.515	ENSMODG00000015551	PUS1	94	72.131	Monodelphis_domestica
ENSMUSG00000029507	Pus1	92	67.956	ENSMALG00000013202	pus1	87	67.956	Monopterus_albus
ENSMUSG00000029507	Pus1	100	100.000	MGP_CAROLIEiJ_G0027551	Pus1	100	100.000	Mus_caroli
ENSMUSG00000029507	Pus1	100	99.237	MGP_PahariEiJ_G0024133	Pus1	100	99.237	Mus_pahari
ENSMUSG00000029507	Pus1	100	100.000	MGP_SPRETEiJ_G0028549	Pus1	100	100.000	Mus_spretus
ENSMUSG00000029507	Pus1	99	81.658	ENSMPUG00000002314	PUS1	100	81.658	Mustela_putorius_furo
ENSMUSG00000029507	Pus1	90	85.795	ENSMLUG00000015790	PUS1	96	85.795	Myotis_lucifugus
ENSMUSG00000029507	Pus1	100	96.429	ENSNGAG00000012976	Pus1	100	92.795	Nannospalax_galili
ENSMUSG00000029507	Pus1	90	70.056	ENSNBRG00000020502	pus1	94	70.571	Neolamprologus_brichardi
ENSMUSG00000029507	Pus1	95	88.064	ENSNLEG00000008505	PUS1	100	93.060	Nomascus_leucogenys
ENSMUSG00000029507	Pus1	93	70.685	ENSMEUG00000002825	PUS1	98	70.685	Notamacropus_eugenii
ENSMUSG00000029507	Pus1	95	74.801	ENSOPRG00000002701	-	99	74.801	Ochotona_princeps
ENSMUSG00000029507	Pus1	99	84.439	ENSODEG00000008248	PUS1	97	87.634	Octodon_degus
ENSMUSG00000029507	Pus1	93	67.647	ENSONIG00000003803	pus1	93	67.647	Oreochromis_niloticus
ENSMUSG00000029507	Pus1	91	77.961	ENSOANG00000010619	PUS1	96	71.942	Ornithorhynchus_anatinus
ENSMUSG00000029507	Pus1	93	84.946	ENSOCUG00000007310	PUS1	84	84.197	Oryctolagus_cuniculus
ENSMUSG00000029507	Pus1	88	71.098	ENSORLG00000010787	pus1	85	69.972	Oryzias_latipes
ENSMUSG00000029507	Pus1	88	71.676	ENSORLG00020011483	pus1	85	70.538	Oryzias_latipes_hni
ENSMUSG00000029507	Pus1	88	71.965	ENSORLG00015023012	pus1	91	70.822	Oryzias_latipes_hsok
ENSMUSG00000029507	Pus1	88	70.809	ENSOMEG00000022655	pus1	81	70.809	Oryzias_melastigma
ENSMUSG00000029507	Pus1	96	86.945	ENSOGAG00000008720	PUS1	99	86.945	Otolemur_garnettii
ENSMUSG00000029507	Pus1	100	82.500	ENSOARG00000013316	PUS1	100	79.908	Ovis_aries
ENSMUSG00000029507	Pus1	100	86.216	ENSPPAG00000040971	PUS1	99	84.561	Pan_paniscus
ENSMUSG00000029507	Pus1	100	80.000	ENSPPRG00000015456	PUS1	100	80.000	Panthera_pardus
ENSMUSG00000029507	Pus1	87	85.965	ENSPTIG00000004201	PUS1	92	84.746	Panthera_tigris_altaica
ENSMUSG00000029507	Pus1	100	85.714	ENSPTRG00000005643	PUS1	99	84.086	Pan_troglodytes
ENSMUSG00000029507	Pus1	100	86.717	ENSPANG00000000376	PUS1	99	85.036	Papio_anubis
ENSMUSG00000029507	Pus1	88	73.563	ENSPKIG00000019369	pus1	91	66.915	Paramormyrops_kingsleyae
ENSMUSG00000029507	Pus1	88	77.937	ENSPSIG00000016432	PUS1	86	75.881	Pelodiscus_sinensis
ENSMUSG00000029507	Pus1	50	30.256	ENSPSIG00000002781	PUSL1	71	30.256	Pelodiscus_sinensis
ENSMUSG00000029507	Pus1	87	69.591	ENSPMGG00000004522	pus1	89	69.591	Periophthalmus_magnuspinnatus
ENSMUSG00000029507	Pus1	100	97.201	ENSPEMG00000013448	Pus1	100	96.927	Peromyscus_maniculatus_bairdii
ENSMUSG00000029507	Pus1	83	60.550	ENSPMAG00000004636	pus1	99	60.550	Petromyzon_marinus
ENSMUSG00000029507	Pus1	80	77.174	ENSPCIG00000022609	-	75	70.032	Phascolarctos_cinereus
ENSMUSG00000029507	Pus1	93	67.575	ENSPFOG00000019669	pus1	88	67.575	Poecilia_formosa
ENSMUSG00000029507	Pus1	93	67.575	ENSPLAG00000002692	-	88	67.575	Poecilia_latipinna
ENSMUSG00000029507	Pus1	93	67.575	ENSPLAG00000007185	pus1	88	67.575	Poecilia_latipinna
ENSMUSG00000029507	Pus1	93	67.575	ENSPMEG00000011115	PUS1	88	67.575	Poecilia_mexicana
ENSMUSG00000029507	Pus1	93	67.575	ENSPMEG00000006038	pus1	91	67.575	Poecilia_mexicana
ENSMUSG00000029507	Pus1	93	67.575	ENSPREG00000007231	pus1	99	68.347	Poecilia_reticulata
ENSMUSG00000029507	Pus1	100	86.869	ENSPPYG00000005132	PUS1	99	84.928	Pongo_abelii
ENSMUSG00000029507	Pus1	75	79.310	ENSPCAG00000009110	-	64	79.310	Procavia_capensis
ENSMUSG00000029507	Pus1	100	78.500	ENSPCOG00000015595	PUS1	100	78.500	Propithecus_coquereli
ENSMUSG00000029507	Pus1	93	68.564	ENSPNYG00000013571	pus1	87	68.564	Pundamilia_nyererei
ENSMUSG00000029507	Pus1	88	73.121	ENSPNAG00000003938	pus1	82	73.121	Pygocentrus_nattereri
ENSMUSG00000029507	Pus1	100	98.728	ENSRNOG00000037500	Pus1	100	98.582	Rattus_norvegicus
ENSMUSG00000029507	Pus1	100	87.218	ENSRBIG00000043177	PUS1	100	87.218	Rhinopithecus_bieti
ENSMUSG00000029507	Pus1	100	86.717	ENSRROG00000039744	PUS1	99	85.036	Rhinopithecus_roxellana
ENSMUSG00000029507	Pus1	86	44.697	YPL212C	-	60	44.697	Saccharomyces_cerevisiae
ENSMUSG00000029507	Pus1	100	85.500	ENSSBOG00000023593	PUS1	100	85.500	Saimiri_boliviensis_boliviensis
ENSMUSG00000029507	Pus1	98	77.494	ENSSHAG00000013193	PUS1	95	76.607	Sarcophilus_harrisii
ENSMUSG00000029507	Pus1	92	73.626	ENSSFOG00015003463	pus1	82	73.626	Scleropages_formosus
ENSMUSG00000029507	Pus1	87	70.145	ENSSMAG00000019075	pus1	87	66.667	Scophthalmus_maximus
ENSMUSG00000029507	Pus1	92	68.579	ENSSDUG00000007102	pus1	89	67.560	Seriola_dumerili
ENSMUSG00000029507	Pus1	92	68.033	ENSSLDG00000022850	pus1	89	67.024	Seriola_lalandi_dorsalis
ENSMUSG00000029507	Pus1	77	76.645	ENSSARG00000008367	PUS1	98	76.645	Sorex_araneus
ENSMUSG00000029507	Pus1	94	76.676	ENSSPUG00000010009	PUS1	93	76.676	Sphenodon_punctatus
ENSMUSG00000029507	Pus1	86	72.271	ENSSPAG00000006272	pus1	86	72.271	Stegastes_partitus
ENSMUSG00000029507	Pus1	100	82.750	ENSSSCG00000009741	PUS1	100	82.750	Sus_scrofa
ENSMUSG00000029507	Pus1	84	83.030	ENSTGUG00000008068	PUS1	100	83.030	Taeniopygia_guttata
ENSMUSG00000029507	Pus1	89	69.014	ENSTRUG00000002198	pus1	91	68.927	Takifugu_rubripes
ENSMUSG00000029507	Pus1	91	67.403	ENSTNIG00000003942	pus1	92	67.680	Tetraodon_nigroviridis
ENSMUSG00000029507	Pus1	99	81.612	ENSTTRG00000000632	PUS1	99	80.430	Tursiops_truncatus
ENSMUSG00000029507	Pus1	99	82.412	ENSUAMG00000017197	PUS1	100	82.412	Ursus_americanus
ENSMUSG00000029507	Pus1	95	84.182	ENSUMAG00000002831	PUS1	100	87.798	Ursus_maritimus
ENSMUSG00000029507	Pus1	99	81.266	ENSVVUG00000004199	PUS1	93	80.542	Vulpes_vulpes
ENSMUSG00000029507	Pus1	81	50.467	ENSXETG00000033640	-	100	50.467	Xenopus_tropicalis
ENSMUSG00000029507	Pus1	92	71.389	ENSXETG00000002030	pus1	90	71.389	Xenopus_tropicalis
ENSMUSG00000029507	Pus1	93	68.033	ENSXCOG00000004722	pus1	95	68.033	Xiphophorus_couchianus
ENSMUSG00000029507	Pus1	93	67.847	ENSXMAG00000000988	pus1	88	67.847	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000049	tRNA binding	-	ISO	Function
GO:0000790	nuclear chromatin	15327771.	IDA	Component
GO:0001522	pseudouridine synthesis	-	IEA	Process
GO:0002153	steroid receptor RNA activator RNA binding	-	ISO	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005515	protein binding	15327771.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	15327771.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005667	transcription factor complex	15327771.	IDA	Component
GO:0005730	nucleolus	15327771.	IDA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0008033	tRNA processing	-	IEA	Process
GO:0009451	RNA modification	-	IEA	Process
GO:0009982	pseudouridine synthase activity	21873635.	IBA	Function
GO:0009982	pseudouridine synthase activity	11027153.	IDA	Function
GO:0009982	pseudouridine synthase activity	15327771.	IMP	Function
GO:0009982	pseudouridine synthase activity	-	ISO	Function
GO:0016853	isomerase activity	-	IEA	Function
GO:0030374	nuclear receptor transcription coactivator activity	15327771.	IDA	Function
GO:0031119	tRNA pseudouridine synthesis	21873635.	IBA	Process
GO:0031119	tRNA pseudouridine synthesis	10094309.11027153.11085940.15327771.	IDA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	15327771.	IDA	Process
GO:0106029	tRNA pseudouridine synthase activity	10094309.	IDA	Function
GO:1990481	mRNA pseudouridine synthesis	21873635.	IBA	Process