EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000029538 (Gene tree)
Gene ID
108014
Gene Symbol
Srsf9
Alias
2610029M16Rik|SRp30c|Sfrs9
Full Name
serine/arginine-rich splicing factor 9
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
5904 bases
Position
chr5:115327177-115333080
Accession
104896
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000031513RRM_1PF00076.224.6e-3312
ENSMUSP00000031513RRM_1PF00076.224.6e-3322
ENSMUSP00000121845RRM_1PF00076.221.2e-1011
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
25993413Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle ProgressionIC & MEF2015Boucas JDOI: 10.1371/journal.pone.0125745
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000209604-1392-ENSMUSP0000014777262 (aa)-A0A1B0GS29
ENSMUST00000149510-767-ENSMUSP00000121845158 (aa)-F6RTE1
ENSMUST00000031513-1162XM_011248158ENSMUSP00000031513222 (aa)XP_011246460Q9D0B0
ENSMUST00000144000-901--- (aa)--
ENSMUST00000142318-1237--- (aa)--
Gene Model
Click here to download ENSMUSG00000029538's gene model file
Pathways
Pathway IDPathway NameSource
mmu03040SpliceosomeKEGG
mmu05168Herpes simplex virus 1 infectionKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029538's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000029538Srsf96839.394ENSMUSG00000021134Srsf58948.780
ENSMUSG00000029538Srsf97038.674ENSMUSG00000016921Srsf65147.297
ENSMUSG00000029538Srsf97870.330ENSMUSG00000018379Srsf18672.414
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000029538Srsf99998.636ENSG00000111786SRSF99998.636Homo_sapiens
ENSMUSG00000029538Srsf97971.038ENSAPOG00000013728srsf97572.131Acanthochromis_polyacanthus
ENSMUSG00000029538Srsf99798.605ENSAMEG00000013294SRSF910098.605Ailuropoda_melanoleuca
ENSMUSG00000029538Srsf99371.362ENSACIG00000015765srsf97276.111Amphilophus_citrinellus
ENSMUSG00000029538Srsf97972.131ENSAOCG00000002992srsf97573.224Amphiprion_ocellaris
ENSMUSG00000029538Srsf98071.739ENSAPEG00000011908srsf97573.224Amphiprion_percula
ENSMUSG00000029538Srsf99862.174ENSATEG00000019984srsf98966.818Anabas_testudineus
ENSMUSG00000029538Srsf99384.689ENSACAG00000002877SRSF98786.977Anolis_carolinensis
ENSMUSG00000029538Srsf99598.585ENSANAG00000035910SRSF99698.585Aotus_nancymaae
ENSMUSG00000029538Srsf99770.852ENSACLG00000015678srsf97575.263Astatotilapia_calliptera
ENSMUSG00000029538Srsf99470.370ENSAMXG00000032281srsf98972.811Astyanax_mexicanus
ENSMUSG00000029538Srsf99998.182ENSBTAG00000012792SRSF99998.182Bos_taurus
ENSMUSG00000029538Srsf99995.909ENSBTAG00000005584-9995.909Bos_taurus
ENSMUSG00000029538Srsf99998.636ENSCJAG00000001187SRSF99998.636Callithrix_jacchus
ENSMUSG00000029538Srsf99998.636ENSCAFG00000010314SRSF99998.636Canis_familiaris
ENSMUSG00000029538Srsf99998.636ENSCAFG00020020612SRSF99998.636Canis_lupus_dingo
ENSMUSG00000029538Srsf99998.182ENSCHIG00000025274SRSF99998.182Capra_hircus
ENSMUSG00000029538Srsf99883.028ENSTSYG00000036169-9883.028Carlito_syrichta
ENSMUSG00000029538Srsf99875.688ENSTSYG00000029305-9775.688Carlito_syrichta
ENSMUSG00000029538Srsf99998.636ENSTSYG00000006848-9998.636Carlito_syrichta
ENSMUSG00000029538Srsf99880.275ENSTSYG00000034124-9880.275Carlito_syrichta
ENSMUSG00000029538Srsf99178.472ENSCAPG00000015483SRSF979100.000Cavia_aperea
ENSMUSG00000029538Srsf99998.636ENSCPOG00000033486SRSF99998.636Cavia_porcellus
ENSMUSG00000029538Srsf99998.636ENSCCAG00000036053SRSF99998.636Cebus_capucinus
ENSMUSG00000029538Srsf98879.592ENSCATG00000000421-9979.592Cercocebus_atys
ENSMUSG00000029538Srsf99998.636ENSCATG00000021315SRSF99998.636Cercocebus_atys
ENSMUSG00000029538Srsf99998.636ENSCLAG00000012289SRSF99998.636Chinchilla_lanigera
ENSMUSG00000029538Srsf99998.636ENSCSAG00000002257SRSF99998.636Chlorocebus_sabaeus
ENSMUSG00000029538Srsf97198.101ENSCHOG00000009241SRSF910098.101Choloepus_hoffmanni
ENSMUSG00000029538Srsf99387.619ENSCPBG00000011340SRSF99388.479Chrysemys_picta_bellii
ENSMUSG00000029538Srsf99198.507ENSCANG00000034161SRSF99198.507Colobus_angolensis_palliatus
ENSMUSG00000029538Srsf99999.091ENSCGRG00001021965Srsf99999.091Cricetulus_griseus_chok1gshd
ENSMUSG00000029538Srsf910093.671ENSCGRG00000001879Srsf99195.139Cricetulus_griseus_crigri
ENSMUSG00000029538Srsf97975.568ENSCSEG00000015663srsf99168.812Cynoglossus_semilaevis
ENSMUSG00000029538Srsf97871.667ENSCVAG00000021417srsf98963.889Cyprinodon_variegatus
ENSMUSG00000029538Srsf99070.192ENSDARG00000008097srsf98966.667Danio_rerio
ENSMUSG00000029538Srsf99999.091ENSDNOG00000012598SRSF99999.091Dasypus_novemcinctus
ENSMUSG00000029538Srsf99998.636ENSDORG00000013162Srsf99998.636Dipodomys_ordii
ENSMUSG00000029538Srsf99577.251ENSETEG00000002606SRSF99877.251Echinops_telfairi
ENSMUSG00000029538Srsf99999.091ENSEASG00005004727SRSF99999.091Equus_asinus_asinus
ENSMUSG00000029538Srsf99999.091ENSECAG00000009116SRSF99999.091Equus_caballus
ENSMUSG00000029538Srsf99970.000ENSEEUG00000011655SRSF99970.000Erinaceus_europaeus
ENSMUSG00000029538Srsf99366.968ENSELUG00000021669srsf98966.216Esox_lucius
ENSMUSG00000029538Srsf99171.287ENSELUG00000012644SRSF98670.335Esox_lucius
ENSMUSG00000029538Srsf99998.636ENSFCAG00000011011SRSF99998.636Felis_catus
ENSMUSG00000029538Srsf99092.958ENSFDAG00000004364SRSF99193.056Fukomys_damarensis
ENSMUSG00000029538Srsf99369.124ENSFHEG00000020851srsf99065.899Fundulus_heteroclitus
ENSMUSG00000029538Srsf98067.368ENSGMOG00000007980srsf97469.681Gadus_morhua
ENSMUSG00000029538Srsf99064.115ENSGAFG00000009123srsf99766.029Gambusia_affinis
ENSMUSG00000029538Srsf99062.727ENSGACG00000016921srsf98962.445Gasterosteus_aculeatus
ENSMUSG00000029538Srsf99387.143ENSGAGG00000016015SRSF99388.018Gopherus_agassizii
ENSMUSG00000029538Srsf95682.857ENSGGOG00000022012-9566.667Gorilla_gorilla
ENSMUSG00000029538Srsf99977.928ENSGGOG00000027142-9977.928Gorilla_gorilla
ENSMUSG00000029538Srsf99770.852ENSHBUG00000019320srsf97477.222Haplochromis_burtoni
ENSMUSG00000029538Srsf98289.560ENSHGLG00000003582-9089.560Heterocephalus_glaber_female
ENSMUSG00000029538Srsf99998.636ENSHGLG00000014372SRSF99998.636Heterocephalus_glaber_female
ENSMUSG00000029538Srsf99998.636ENSHGLG00100013695SRSF99998.636Heterocephalus_glaber_male
ENSMUSG00000029538Srsf98388.587ENSHGLG00100015198-9088.587Heterocephalus_glaber_male
ENSMUSG00000029538Srsf95680.000ENSHCOG00000018428-8372.381Hippocampus_comes
ENSMUSG00000029538Srsf95680.000ENSHCOG00000017311srsf99046.637Hippocampus_comes
ENSMUSG00000029538Srsf95680.000ENSHCOG00000017326srsf98372.277Hippocampus_comes
ENSMUSG00000029538Srsf99470.423ENSIPUG00000005511srsf98968.692Ictalurus_punctatus
ENSMUSG00000029538Srsf99999.091ENSSTOG00000007344SRSF99999.091Ictidomys_tridecemlineatus
ENSMUSG00000029538Srsf99998.182ENSJJAG00000013374Srsf99998.182Jaculus_jaculus
ENSMUSG00000029538Srsf99363.927ENSKMAG00000007113srsf98965.909Kryptolebias_marmoratus
ENSMUSG00000029538Srsf99563.889ENSLBEG00000017430srsf99067.556Labrus_bergylta
ENSMUSG00000029538Srsf910074.336ENSLACG00000018228SRSF99976.652Latimeria_chalumnae
ENSMUSG00000029538Srsf99172.195ENSLOCG00000004044srsf98573.113Lepisosteus_oculatus
ENSMUSG00000029538Srsf97897.126ENSLAFG00000006381SRSF99997.126Loxodonta_africana
ENSMUSG00000029538Srsf98498.930ENSMFAG00000039423SRSF910098.930Macaca_fascicularis
ENSMUSG00000029538Srsf99181.281ENSMMUG00000040941-9881.281Macaca_mulatta
ENSMUSG00000029538Srsf99693.548ENSMMUG00000016494SRSF97693.548Macaca_mulatta
ENSMUSG00000029538Srsf99998.636ENSMNEG00000044129SRSF99998.636Macaca_nemestrina
ENSMUSG00000029538Srsf99498.558ENSMLEG00000041155SRSF910098.558Mandrillus_leucophaeus
ENSMUSG00000029538Srsf99368.981ENSMAMG00000011581srsf97573.770Mastacembelus_armatus
ENSMUSG00000029538Srsf99770.852ENSMZEG00005018422srsf97575.263Maylandia_zebra
ENSMUSG00000029538Srsf99998.182ENSMAUG00000011403Srsf99998.182Mesocricetus_auratus
ENSMUSG00000029538Srsf99998.636ENSMICG00000008674SRSF99998.636Microcebus_murinus
ENSMUSG00000029538Srsf99998.182ENSMOCG00000021163Srsf99998.182Microtus_ochrogaster
ENSMUSG00000029538Srsf99560.793ENSMMOG00000009349srsf98464.574Mola_mola
ENSMUSG00000029538Srsf99782.870ENSMODG00000003146SRSF99985.648Monodelphis_domestica
ENSMUSG00000029538Srsf99368.246ENSMALG00000011678srsf98869.668Monopterus_albus
ENSMUSG00000029538Srsf9100100.000MGP_CAROLIEiJ_G0027622Srsf9100100.000Mus_caroli
ENSMUSG00000029538Srsf910096.835MGP_PahariEiJ_G0024202-10096.835Mus_pahari
ENSMUSG00000029538Srsf9100100.000MGP_SPRETEiJ_G0028620Srsf9100100.000Mus_spretus
ENSMUSG00000029538Srsf99997.748ENSMPUG00000003193SRSF99997.748Mustela_putorius_furo
ENSMUSG00000029538Srsf99996.396ENSMLUG00000010346SRSF99996.396Myotis_lucifugus
ENSMUSG00000029538Srsf99998.182ENSNGAG00000012738Srsf99998.182Nannospalax_galili
ENSMUSG00000029538Srsf99372.300ENSNBRG00000003888srsf97477.222Neolamprologus_brichardi
ENSMUSG00000029538Srsf99183.744ENSNLEG00000033316-9983.744Nomascus_leucogenys
ENSMUSG00000029538Srsf99998.636ENSNLEG00000015661SRSF99998.636Nomascus_leucogenys
ENSMUSG00000029538Srsf97182.166ENSMEUG00000004069SRSF99984.713Notamacropus_eugenii
ENSMUSG00000029538Srsf99996.364ENSOPRG00000004234SRSF99996.364Ochotona_princeps
ENSMUSG00000029538Srsf956100.000ENSODEG00000006061SRSF99894.958Octodon_degus
ENSMUSG00000029538Srsf99372.300ENSONIG00000013974srsf97577.222Oreochromis_niloticus
ENSMUSG00000029538Srsf99998.182ENSOCUG00000024603SRSF99998.182Oryctolagus_cuniculus
ENSMUSG00000029538Srsf99063.462ENSORLG00000023709srsf98964.220Oryzias_latipes
ENSMUSG00000029538Srsf99063.462ENSORLG00020017678srsf98964.220Oryzias_latipes_hni
ENSMUSG00000029538Srsf99063.462ENSORLG00015004857srsf98964.220Oryzias_latipes_hsok
ENSMUSG00000029538Srsf99063.942ENSOMEG00000002601srsf98964.679Oryzias_melastigma
ENSMUSG00000029538Srsf99998.182ENSOGAG00000003852SRSF99998.182Otolemur_garnettii
ENSMUSG00000029538Srsf99597.630ENSOARG00000012402SRSF99991.928Ovis_aries
ENSMUSG00000029538Srsf99198.515ENSPPAG00000034420SRSF98698.515Pan_paniscus
ENSMUSG00000029538Srsf95685.714ENSPPAG00000026547-9574.167Pan_paniscus
ENSMUSG00000029538Srsf99998.636ENSPPRG00000001309SRSF99998.636Panthera_pardus
ENSMUSG00000029538Srsf97198.734ENSPTIG00000010327SRSF97198.734Panthera_tigris_altaica
ENSMUSG00000029538Srsf95685.714ENSPTRG00000052688-9574.167Pan_troglodytes
ENSMUSG00000029538Srsf99998.636ENSPTRG00000005535SRSF99998.636Pan_troglodytes
ENSMUSG00000029538Srsf99998.636ENSPANG00000016072SRSF99998.636Papio_anubis
ENSMUSG00000029538Srsf98369.841ENSPKIG00000024851SRSF98564.516Paramormyrops_kingsleyae
ENSMUSG00000029538Srsf99071.078ENSPKIG00000023787srsf98568.116Paramormyrops_kingsleyae
ENSMUSG00000029538Srsf99554.237ENSPMGG00000016215srsf97562.567Periophthalmus_magnuspinnatus
ENSMUSG00000029538Srsf99998.182ENSPEMG00000016311Srsf99998.182Peromyscus_maniculatus_bairdii
ENSMUSG00000029538Srsf910085.135ENSPCIG00000025998SRSF99286.486Phascolarctos_cinereus
ENSMUSG00000029538Srsf97869.189ENSPFOG00000019792srsf97472.043Poecilia_formosa
ENSMUSG00000029538Srsf97874.138ENSPLAG00000022740srsf98865.566Poecilia_latipinna
ENSMUSG00000029538Srsf97869.189ENSPMEG00000008809srsf97472.043Poecilia_mexicana
ENSMUSG00000029538Srsf98372.432ENSPREG00000013165srsf98466.355Poecilia_reticulata
ENSMUSG00000029538Srsf99997.273ENSPPYG00000019910-9997.273Pongo_abelii
ENSMUSG00000029538Srsf99995.455ENSPPYG00000029896-9995.455Pongo_abelii
ENSMUSG00000029538Srsf99998.636ENSPPYG00000005031-9998.636Pongo_abelii
ENSMUSG00000029538Srsf97195.570ENSPCAG00000013889SRSF910095.570Procavia_capensis
ENSMUSG00000029538Srsf99998.636ENSPCOG00000015115SRSF99998.636Propithecus_coquereli
ENSMUSG00000029538Srsf99999.091ENSPVAG00000002229SRSF99999.091Pteropus_vampyrus
ENSMUSG00000029538Srsf99372.300ENSPNYG00000008644srsf97477.222Pundamilia_nyererei
ENSMUSG00000029538Srsf99071.569ENSPNAG00000003588srsf98967.593Pygocentrus_nattereri
ENSMUSG00000029538Srsf99997.273ENSRNOG00000001163Srsf99997.273Rattus_norvegicus
ENSMUSG00000029538Srsf98287.978ENSRBIG00000042683SRSF99487.978Rhinopithecus_bieti
ENSMUSG00000029538Srsf98390.217ENSRROG00000041980SRSF99591.011Rhinopithecus_roxellana
ENSMUSG00000029538Srsf95098.198ENSSBOG00000017305SRSF98698.198Saimiri_boliviensis_boliviensis
ENSMUSG00000029538Srsf96791.509ENSSHAG00000005685SRSF910086.335Sarcophilus_harrisii
ENSMUSG00000029538Srsf99371.226ENSSFOG00015002476SRSF98472.330Scleropages_formosus
ENSMUSG00000029538Srsf99470.093ENSSFOG00015017303srsf98469.082Scleropages_formosus
ENSMUSG00000029538Srsf99868.444ENSSMAG00000002039srsf98868.519Scophthalmus_maximus
ENSMUSG00000029538Srsf99363.348ENSSDUG00000018908srsf98966.216Seriola_dumerili
ENSMUSG00000029538Srsf99861.638ENSSLDG00000012305srsf98966.216Seriola_lalandi_dorsalis
ENSMUSG00000029538Srsf97198.101ENSSARG00000003434SRSF910098.101Sorex_araneus
ENSMUSG00000029538Srsf99386.124ENSSPUG00000015680SRSF99487.783Sphenodon_punctatus
ENSMUSG00000029538Srsf97969.355ENSSPAG00000006285srsf97672.727Stegastes_partitus
ENSMUSG00000029538Srsf99967.727ENSSSCG00000038585-9968.182Sus_scrofa
ENSMUSG00000029538Srsf99999.091ENSSSCG00000009906SRSF99999.091Sus_scrofa
ENSMUSG00000029538Srsf95680.000ENSTRUG00000012723srsf97350.521Takifugu_rubripes
ENSMUSG00000029538Srsf97975.568ENSTNIG00000000697srsf97375.568Tetraodon_nigroviridis
ENSMUSG00000029538Srsf98997.475ENSTBEG00000008499SRSF910097.475Tupaia_belangeri
ENSMUSG00000029538Srsf98998.985ENSTTRG00000000145SRSF910098.985Tursiops_truncatus
ENSMUSG00000029538Srsf99999.091ENSUAMG00000015527SRSF99999.091Ursus_americanus
ENSMUSG00000029538Srsf97791.525ENSUMAG00000006151SRSF98386.702Ursus_maritimus
ENSMUSG00000029538Srsf98368.108ENSVPAG00000010361SRSF910068.108Vicugna_pacos
ENSMUSG00000029538Srsf99998.636ENSVVUG00000021065SRSF99998.636Vulpes_vulpes
ENSMUSG00000029538Srsf99974.336ENSXETG00000026940srsf99976.549Xenopus_tropicalis
ENSMUSG00000029538Srsf99064.115ENSXMAG00000001438srsf99866.029Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000381regulation of alternative mRNA splicing, via spliceosome21873635.IBAProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005730nucleolus-ISOComponent
GO:0006397mRNA processing-IEAProcess
GO:0008380RNA splicing-IEAProcess
GO:0016607nuclear speck21873635.IBAComponent
GO:0019904protein domain specific binding-ISOFunction
GO:0045292mRNA cis splicing, via spliceosome21873635.IBAProcess
GO:0048025negative regulation of mRNA splicing, via spliceosome-ISOProcess

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