EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000029594 (Gene tree)
Gene ID: 74111
Gene Symbol: Rbm19
Alias: 1200009A02Rik
Full Name: RNA binding motif protein 19
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 82517 bases
Position: chr5:120116465-120198981
Accession: 1921361
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000031590	RRM_1	PF00076.22	1.4e-85	1	5
ENSMUSP00000031590	RRM_1	PF00076.22	1.4e-85	2	5
ENSMUSP00000031590	RRM_1	PF00076.22	1.4e-85	3	5
ENSMUSP00000031590	RRM_1	PF00076.22	1.4e-85	4	5
ENSMUSP00000031590	RRM_1	PF00076.22	1.4e-85	5	5

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000200841	-	1396	-	-	- (aa)	-	-
ENSMUST00000202213	-	485	-	-	- (aa)	-	-
ENSMUST00000202777	-	3900	-	ENSMUSP00000144339	870 (aa)	-	A0A0J9YUT8
ENSMUST00000201792	-	391	-	-	- (aa)	-	-
ENSMUST00000202388	-	455	-	-	- (aa)	-	-
ENSMUST00000031590	-	4010	-	ENSMUSP00000031590	952 (aa)	-	Q8R3C6
ENSMUST00000202788	-	360	-	-	- (aa)	-	-
ENSMUST00000201105	-	635	-	-	- (aa)	-	-
ENSMUST00000201075	-	1933	-	-	- (aa)	-	-
ENSMUST00000201527	-	600	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000029594's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029594's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000029594	Rbm19	62	34.667	ENSMUSG00000022283	Pabpc1	58	34.667
ENSMUSG00000029594	Rbm19	63	34.667	ENSMUSG00000046173	Pabpc6	57	34.667
ENSMUSG00000029594	Rbm19	74	36.066	ENSMUSG00000054582	Pabpc1l	60	35.484
ENSMUSG00000029594	Rbm19	70	34.667	ENSMUSG00000051732	Pabpc2	59	34.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029594	Rbm19	100	80.765	ENSG00000122965	RBM19	98	85.185	Homo_sapiens
ENSMUSG00000029594	Rbm19	99	59.248	ENSAPOG00000010507	rbm19	99	58.873	Acanthochromis_polyacanthus
ENSMUSG00000029594	Rbm19	100	76.701	ENSAMEG00000008544	RBM19	100	77.010	Ailuropoda_melanoleuca
ENSMUSG00000029594	Rbm19	99	57.841	ENSACIG00000017780	rbm19	99	59.362	Amphilophus_citrinellus
ENSMUSG00000029594	Rbm19	99	59.359	ENSAOCG00000008554	rbm19	99	59.979	Amphiprion_ocellaris
ENSMUSG00000029594	Rbm19	99	56.836	ENSAPEG00000022381	rbm19	96	57.460	Amphiprion_percula
ENSMUSG00000029594	Rbm19	97	59.029	ENSATEG00000007000	rbm19	99	58.712	Anabas_testudineus
ENSMUSG00000029594	Rbm19	98	62.357	ENSAPLG00000015319	RBM19	99	62.736	Anas_platyrhynchos
ENSMUSG00000029594	Rbm19	99	65.542	ENSACAG00000005065	RBM19	99	65.346	Anolis_carolinensis
ENSMUSG00000029594	Rbm19	100	79.814	ENSANAG00000024136	RBM19	100	79.917	Aotus_nancymaae
ENSMUSG00000029594	Rbm19	99	56.757	ENSACLG00000001399	rbm19	99	56.146	Astatotilapia_calliptera
ENSMUSG00000029594	Rbm19	88	60.905	ENSAMXG00000017073	rbm19	97	61.228	Astyanax_mexicanus
ENSMUSG00000029594	Rbm19	100	79.567	ENSBTAG00000031824	RBM19	100	80.000	Bos_taurus
ENSMUSG00000029594	Rbm19	83	43.704	WBGene00004315	rbd-1	99	43.041	Caenorhabditis_elegans
ENSMUSG00000029594	Rbm19	100	79.607	ENSCJAG00000009798	RBM19	100	79.814	Callithrix_jacchus
ENSMUSG00000029594	Rbm19	100	78.373	ENSCAFG00000009146	RBM19	99	78.579	Canis_familiaris
ENSMUSG00000029594	Rbm19	100	78.476	ENSCAFG00020017862	RBM19	99	78.682	Canis_lupus_dingo
ENSMUSG00000029594	Rbm19	100	80.000	ENSCHIG00000014917	RBM19	100	80.311	Capra_hircus
ENSMUSG00000029594	Rbm19	99	77.740	ENSTSYG00000007207	RBM19	98	77.627	Carlito_syrichta
ENSMUSG00000029594	Rbm19	99	79.368	ENSCAPG00000006869	RBM19	99	79.789	Cavia_aperea
ENSMUSG00000029594	Rbm19	100	80.269	ENSCPOG00000026629	RBM19	100	80.475	Cavia_porcellus
ENSMUSG00000029594	Rbm19	100	79.917	ENSCCAG00000021665	-	100	80.021	Cebus_capucinus
ENSMUSG00000029594	Rbm19	92	72.059	ENSCCAG00000026637	-	99	71.534	Cebus_capucinus
ENSMUSG00000029594	Rbm19	99	80.398	ENSCATG00000035841	RBM19	100	80.733	Cercocebus_atys
ENSMUSG00000029594	Rbm19	100	79.959	ENSCLAG00000009965	RBM19	100	80.576	Chinchilla_lanigera
ENSMUSG00000029594	Rbm19	100	76.313	ENSCSAG00000002352	RBM19	96	77.228	Chlorocebus_sabaeus
ENSMUSG00000029594	Rbm19	99	66.531	ENSCPBG00000011990	RBM19	99	67.590	Chrysemys_picta_bellii
ENSMUSG00000029594	Rbm19	80	50.391	ENSCING00000023076	-	96	49.160	Ciona_intestinalis
ENSMUSG00000029594	Rbm19	100	80.145	ENSCANG00000035927	RBM19	100	80.352	Colobus_angolensis_palliatus
ENSMUSG00000029594	Rbm19	100	89.969	ENSCGRG00001000323	Rbm19	100	90.178	Cricetulus_griseus_chok1gshd
ENSMUSG00000029594	Rbm19	100	89.969	ENSCGRG00000010371	Rbm19	100	90.178	Cricetulus_griseus_crigri
ENSMUSG00000029594	Rbm19	99	58.230	ENSCSEG00000017436	rbm19	95	63.609	Cynoglossus_semilaevis
ENSMUSG00000029594	Rbm19	99	57.113	ENSCVAG00000000300	rbm19	100	58.058	Cyprinodon_variegatus
ENSMUSG00000029594	Rbm19	99	57.505	ENSDARG00000042590	rbm19	100	57.377	Danio_rerio
ENSMUSG00000029594	Rbm19	99	77.325	ENSDNOG00000024534	RBM19	96	77.871	Dasypus_novemcinctus
ENSMUSG00000029594	Rbm19	99	76.261	ENSDORG00000008549	Rbm19	100	76.667	Dipodomys_ordii
ENSMUSG00000029594	Rbm19	66	43.405	FBgn0036018	CG3335	71	41.654	Drosophila_melanogaster
ENSMUSG00000029594	Rbm19	65	94.203	ENSETEG00000016887	-	58	94.203	Echinops_telfairi
ENSMUSG00000029594	Rbm19	87	47.481	ENSEBUG00000008521	-	99	45.218	Eptatretus_burgeri
ENSMUSG00000029594	Rbm19	100	80.682	ENSEASG00005009452	RBM19	100	81.198	Equus_asinus_asinus
ENSMUSG00000029594	Rbm19	100	80.928	ENSECAG00000023716	RBM19	100	81.443	Equus_caballus
ENSMUSG00000029594	Rbm19	99	57.755	ENSELUG00000012561	rbm19	99	58.221	Esox_lucius
ENSMUSG00000029594	Rbm19	100	77.905	ENSFCAG00000002962	RBM19	99	77.755	Felis_catus
ENSMUSG00000029594	Rbm19	98	63.580	ENSFALG00000007768	RBM19	99	62.449	Ficedula_albicollis
ENSMUSG00000029594	Rbm19	100	79.418	ENSFDAG00000004629	RBM19	100	79.938	Fukomys_damarensis
ENSMUSG00000029594	Rbm19	99	57.024	ENSFHEG00000012578	rbm19	99	57.497	Fundulus_heteroclitus
ENSMUSG00000029594	Rbm19	99	55.732	ENSGMOG00000013120	rbm19	100	56.316	Gadus_morhua
ENSMUSG00000029594	Rbm19	99	63.697	ENSGALG00000008289	RBM19	99	65.235	Gallus_gallus
ENSMUSG00000029594	Rbm19	99	58.534	ENSGAFG00000012337	rbm19	99	57.845	Gambusia_affinis
ENSMUSG00000029594	Rbm19	99	57.692	ENSGACG00000009462	rbm19	100	58.668	Gasterosteus_aculeatus
ENSMUSG00000029594	Rbm19	62	73.322	ENSGAGG00000019457	RBM19	100	73.826	Gopherus_agassizii
ENSMUSG00000029594	Rbm19	100	80.869	ENSGGOG00000007371	RBM19	100	81.075	Gorilla_gorilla
ENSMUSG00000029594	Rbm19	99	57.216	ENSHBUG00000009047	rbm19	99	58.186	Haplochromis_burtoni
ENSMUSG00000029594	Rbm19	100	80.105	ENSHGLG00000010899	RBM19	100	80.209	Heterocephalus_glaber_female
ENSMUSG00000029594	Rbm19	100	79.896	ENSHGLG00100017936	RBM19	100	80.000	Heterocephalus_glaber_male
ENSMUSG00000029594	Rbm19	99	60.104	ENSHCOG00000016446	rbm19	99	58.750	Hippocampus_comes
ENSMUSG00000029594	Rbm19	99	58.290	ENSIPUG00000023849	rbm19	99	57.769	Ictalurus_punctatus
ENSMUSG00000029594	Rbm19	99	59.443	ENSKMAG00000014807	rbm19	99	60.042	Kryptolebias_marmoratus
ENSMUSG00000029594	Rbm19	99	57.592	ENSLBEG00000012897	rbm19	99	56.563	Labrus_bergylta
ENSMUSG00000029594	Rbm19	74	60.366	ENSLACG00000012030	RBM19	89	62.331	Latimeria_chalumnae
ENSMUSG00000029594	Rbm19	99	62.241	ENSLOCG00000008341	rbm19	100	62.565	Lepisosteus_oculatus
ENSMUSG00000029594	Rbm19	97	78.195	ENSLAFG00000004187	RBM19	100	78.664	Loxodonta_africana
ENSMUSG00000029594	Rbm19	100	80.869	ENSMFAG00000046091	RBM19	100	77.559	Macaca_fascicularis
ENSMUSG00000029594	Rbm19	100	80.972	ENSMMUG00000010496	RBM19	100	81.179	Macaca_mulatta
ENSMUSG00000029594	Rbm19	96	79.929	ENSMNEG00000028452	RBM19	99	80.165	Macaca_nemestrina
ENSMUSG00000029594	Rbm19	100	78.395	ENSMLEG00000034550	RBM19	100	78.726	Mandrillus_leucophaeus
ENSMUSG00000029594	Rbm19	99	60.562	ENSMAMG00000014397	rbm19	99	59.751	Mastacembelus_armatus
ENSMUSG00000029594	Rbm19	99	59.548	ENSMZEG00005016607	rbm19	99	59.771	Maylandia_zebra
ENSMUSG00000029594	Rbm19	98	54.671	ENSMGAG00000010087	RBM19	99	55.731	Meleagris_gallopavo
ENSMUSG00000029594	Rbm19	100	90.377	ENSMAUG00000019290	Rbm19	100	91.109	Mesocricetus_auratus
ENSMUSG00000029594	Rbm19	100	81.639	ENSMICG00000014423	RBM19	100	82.523	Microcebus_murinus
ENSMUSG00000029594	Rbm19	99	57.233	ENSMMOG00000017839	rbm19	99	57.218	Mola_mola
ENSMUSG00000029594	Rbm19	99	72.593	ENSMODG00000003597	RBM19	99	73.684	Monodelphis_domestica
ENSMUSG00000029594	Rbm19	99	58.542	ENSMALG00000012647	rbm19	99	58.756	Monopterus_albus
ENSMUSG00000029594	Rbm19	100	98.428	MGP_CAROLIEiJ_G0027656	Rbm19	100	98.428	Mus_caroli
ENSMUSG00000029594	Rbm19	100	96.218	MGP_PahariEiJ_G0024238	Rbm19	100	96.218	Mus_pahari
ENSMUSG00000029594	Rbm19	100	98.846	MGP_SPRETEiJ_G0028656	Rbm19	100	98.846	Mus_spretus
ENSMUSG00000029594	Rbm19	100	77.231	ENSMPUG00000002694	RBM19	99	78.866	Mustela_putorius_furo
ENSMUSG00000029594	Rbm19	100	80.777	ENSMLUG00000015075	RBM19	100	80.879	Myotis_lucifugus
ENSMUSG00000029594	Rbm19	99	85.744	ENSNGAG00000009076	Rbm19	99	86.368	Nannospalax_galili
ENSMUSG00000029594	Rbm19	99	58.428	ENSNBRG00000005913	rbm19	99	59.143	Neolamprologus_brichardi
ENSMUSG00000029594	Rbm19	100	80.869	ENSNLEG00000000190	RBM19	100	80.972	Nomascus_leucogenys
ENSMUSG00000029594	Rbm19	92	68.936	ENSMEUG00000004045	RBM19	92	68.936	Notamacropus_eugenii
ENSMUSG00000029594	Rbm19	100	78.631	ENSOPRG00000012064	RBM19	100	78.734	Ochotona_princeps
ENSMUSG00000029594	Rbm19	100	77.140	ENSODEG00000012977	RBM19	100	78.079	Octodon_degus
ENSMUSG00000029594	Rbm19	100	60.521	ENSONIG00000013576	rbm19	100	58.938	Oreochromis_niloticus
ENSMUSG00000029594	Rbm19	100	76.646	ENSOCUG00000009398	RBM19	99	77.273	Oryctolagus_cuniculus
ENSMUSG00000029594	Rbm19	99	57.676	ENSORLG00000008077	rbm19	99	58.342	Oryzias_latipes
ENSMUSG00000029594	Rbm19	99	56.757	ENSORLG00020013187	rbm19	99	57.309	Oryzias_latipes_hni
ENSMUSG00000029594	Rbm19	99	57.764	ENSORLG00015001774	rbm19	99	58.014	Oryzias_latipes_hsok
ENSMUSG00000029594	Rbm19	99	58.498	ENSOMEG00000003334	rbm19	99	58.038	Oryzias_melastigma
ENSMUSG00000029594	Rbm19	97	80.952	ENSOGAG00000000602	RBM19	100	80.488	Otolemur_garnettii
ENSMUSG00000029594	Rbm19	100	78.876	ENSOARG00000006827	RBM19	100	80.207	Ovis_aries
ENSMUSG00000029594	Rbm19	100	81.282	ENSPPAG00000043712	RBM19	100	81.489	Pan_paniscus
ENSMUSG00000029594	Rbm19	100	77.697	ENSPPRG00000023027	RBM19	99	78.193	Panthera_pardus
ENSMUSG00000029594	Rbm19	100	70.954	ENSPTIG00000011096	RBM19	100	71.473	Panthera_tigris_altaica
ENSMUSG00000029594	Rbm19	100	81.075	ENSPTRG00000005494	RBM19	100	81.282	Pan_troglodytes
ENSMUSG00000029594	Rbm19	100	80.849	ENSPANG00000004795	RBM19	99	78.396	Papio_anubis
ENSMUSG00000029594	Rbm19	99	58.108	ENSPKIG00000017095	rbm19	99	57.128	Paramormyrops_kingsleyae
ENSMUSG00000029594	Rbm19	93	64.636	ENSPSIG00000008191	RBM19	99	64.798	Pelodiscus_sinensis
ENSMUSG00000029594	Rbm19	84	61.842	ENSPMGG00000019087	rbm19	100	60.957	Periophthalmus_magnuspinnatus
ENSMUSG00000029594	Rbm19	100	90.356	ENSPEMG00000018058	Rbm19	100	90.461	Peromyscus_maniculatus_bairdii
ENSMUSG00000029594	Rbm19	99	73.188	ENSPCIG00000028861	RBM19	100	73.313	Phascolarctos_cinereus
ENSMUSG00000029594	Rbm19	99	57.724	ENSPFOG00000015300	rbm19	99	58.290	Poecilia_formosa
ENSMUSG00000029594	Rbm19	99	58.351	ENSPLAG00000000059	rbm19	99	58.707	Poecilia_latipinna
ENSMUSG00000029594	Rbm19	99	57.098	ENSPMEG00000018585	rbm19	97	63.339	Poecilia_mexicana
ENSMUSG00000029594	Rbm19	99	58.394	ENSPREG00000000978	rbm19	99	59.228	Poecilia_reticulata
ENSMUSG00000029594	Rbm19	100	78.077	ENSPPYG00000004993	RBM19	100	78.180	Pongo_abelii
ENSMUSG00000029594	Rbm19	71	77.447	ENSPCAG00000005063	-	59	77.447	Procavia_capensis
ENSMUSG00000029594	Rbm19	100	81.451	ENSPCOG00000016190	RBM19	100	81.347	Propithecus_coquereli
ENSMUSG00000029594	Rbm19	100	77.835	ENSPVAG00000011618	RBM19	99	78.660	Pteropus_vampyrus
ENSMUSG00000029594	Rbm19	99	58.359	ENSPNYG00000017434	rbm19	99	57.744	Pundamilia_nyererei
ENSMUSG00000029594	Rbm19	99	58.368	ENSPNAG00000012069	rbm19	99	59.375	Pygocentrus_nattereri
ENSMUSG00000029594	Rbm19	100	93.927	ENSRNOG00000001397	Rbm19	100	93.927	Rattus_norvegicus
ENSMUSG00000029594	Rbm19	100	79.938	ENSRBIG00000041419	RBM19	100	79.007	Rhinopithecus_bieti
ENSMUSG00000029594	Rbm19	100	79.731	ENSRROG00000031938	RBM19	100	80.352	Rhinopithecus_roxellana
ENSMUSG00000029594	Rbm19	72	38.413	YPR112C	-	77	37.958	Saccharomyces_cerevisiae
ENSMUSG00000029594	Rbm19	96	70.755	ENSSBOG00000022679	-	99	69.540	Saimiri_boliviensis_boliviensis
ENSMUSG00000029594	Rbm19	100	77.743	ENSSBOG00000021434	-	100	77.973	Saimiri_boliviensis_boliviensis
ENSMUSG00000029594	Rbm19	99	72.555	ENSSHAG00000012256	RBM19	100	72.842	Sarcophilus_harrisii
ENSMUSG00000029594	Rbm19	99	56.531	ENSSFOG00015005124	rbm19	99	57.582	Scleropages_formosus
ENSMUSG00000029594	Rbm19	99	59.750	ENSSMAG00000011828	rbm19	99	59.124	Scophthalmus_maximus
ENSMUSG00000029594	Rbm19	99	59.855	ENSSDUG00000013544	rbm19	99	58.921	Seriola_dumerili
ENSMUSG00000029594	Rbm19	88	63.166	ENSSLDG00000025413	rbm19	97	62.891	Seriola_lalandi_dorsalis
ENSMUSG00000029594	Rbm19	61	72.137	ENSSPUG00000011064	RBM19	98	72.137	Sphenodon_punctatus
ENSMUSG00000029594	Rbm19	99	55.758	ENSSPAG00000018685	rbm19	98	57.188	Stegastes_partitus
ENSMUSG00000029594	Rbm19	100	80.062	ENSSSCG00000009868	RBM19	100	81.412	Sus_scrofa
ENSMUSG00000029594	Rbm19	99	65.702	ENSTGUG00000009017	RBM19	100	65.973	Taeniopygia_guttata
ENSMUSG00000029594	Rbm19	99	58.958	ENSTRUG00000016032	rbm19	99	58.732	Takifugu_rubripes
ENSMUSG00000029594	Rbm19	77	88.235	ENSTBEG00000000703	RBM19	73	91.803	Tupaia_belangeri
ENSMUSG00000029594	Rbm19	84	76.997	ENSTTRG00000003987	RBM19	85	77.316	Tursiops_truncatus
ENSMUSG00000029594	Rbm19	99	78.274	ENSUAMG00000002076	RBM19	99	78.898	Ursus_americanus
ENSMUSG00000029594	Rbm19	99	78.653	ENSUMAG00000010816	RBM19	100	79.275	Ursus_maritimus
ENSMUSG00000029594	Rbm19	100	78.682	ENSVVUG00000007886	RBM19	99	78.800	Vulpes_vulpes
ENSMUSG00000029594	Rbm19	99	61.123	ENSXETG00000017668	rbm19	99	61.435	Xenopus_tropicalis
ENSMUSG00000029594	Rbm19	99	57.736	ENSXCOG00000016995	rbm19	69	63.444	Xiphophorus_couchianus
ENSMUSG00000029594	Rbm19	99	58.359	ENSXMAG00000007641	rbm19	99	57.680	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005654	nucleoplasm	16027046.	IDA	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	16027046.	IDA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	16027046.	IDA	Component
GO:0007275	multicellular organism development	-	IEA	Process
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0040019	positive regulation of embryonic development	16027046.	IMP	Process
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process