EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000029599 (Gene tree)
Gene ID: 71990
Gene Symbol: Ddx54
Alias: 2410015A15Rik|APR-5|DP97
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 15854 bases
Position: chr5:120612739-120628592
Accession: 1919240
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000031598	DBP10CT	PF08147.12	4.3e-18	1	1
ENSMUSP00000031598	ResIII	PF04851.15	2.8e-06	1	1
ENSMUSP00000031598	DEAD	PF00270.29	1.6e-49	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000031598	-	4322	-	ENSMUSP00000031598	874 (aa)	-	Q8K4L0
ENSMUST00000201698	-	471	-	-	- (aa)	-	-
ENSMUST00000201616	-	845	-	-	- (aa)	-	-
ENSMUST00000202672	-	4302	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000029599's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029599's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000029599	Ddx54	50	32.366	ENSMUSG00000001674	Ddx18	64	32.294

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029599	Ddx54	100	84.389	ENSG00000123064	DDX54	100	97.115	Homo_sapiens
ENSMUSG00000029599	Ddx54	95	62.485	ENSAPOG00000008602	ddx54	98	62.398	Acanthochromis_polyacanthus
ENSMUSG00000029599	Ddx54	98	85.035	ENSAMEG00000008775	DDX54	99	83.827	Ailuropoda_melanoleuca
ENSMUSG00000029599	Ddx54	96	62.544	ENSACIG00000019104	ddx54	98	62.427	Amphilophus_citrinellus
ENSMUSG00000029599	Ddx54	95	62.441	ENSAOCG00000008449	ddx54	98	62.354	Amphiprion_ocellaris
ENSMUSG00000029599	Ddx54	95	62.441	ENSAPEG00000014287	ddx54	98	62.354	Amphiprion_percula
ENSMUSG00000029599	Ddx54	95	62.750	ENSATEG00000018529	ddx54	97	62.985	Anabas_testudineus
ENSMUSG00000029599	Ddx54	93	70.330	ENSAPLG00000013191	DDX54	100	70.208	Anas_platyrhynchos
ENSMUSG00000029599	Ddx54	92	69.137	ENSACAG00000004703	DDX54	96	68.742	Anolis_carolinensis
ENSMUSG00000029599	Ddx54	89	76.282	ENSANAG00000032241	-	95	76.073	Aotus_nancymaae
ENSMUSG00000029599	Ddx54	100	74.466	ENSANAG00000032761	-	100	73.850	Aotus_nancymaae
ENSMUSG00000029599	Ddx54	97	62.326	ENSACLG00000013176	ddx54	98	62.310	Astatotilapia_calliptera
ENSMUSG00000029599	Ddx54	96	62.750	ENSAMXG00000009189	ddx54	98	62.045	Astyanax_mexicanus
ENSMUSG00000029599	Ddx54	100	84.449	ENSBTAG00000011930	DDX54	95	84.886	Bos_taurus
ENSMUSG00000029599	Ddx54	87	45.038	WBGene00022378	Y94H6A.5	95	44.280	Caenorhabditis_elegans
ENSMUSG00000029599	Ddx54	93	83.516	ENSCJAG00000010039	DDX54	88	83.639	Callithrix_jacchus
ENSMUSG00000029599	Ddx54	65	81.010	ENSCAFG00000009029	DDX54	99	81.359	Canis_familiaris
ENSMUSG00000029599	Ddx54	100	84.580	ENSCAFG00020017643	DDX54	100	84.694	Canis_lupus_dingo
ENSMUSG00000029599	Ddx54	100	82.805	ENSCHIG00000026798	DDX54	100	82.413	Capra_hircus
ENSMUSG00000029599	Ddx54	99	79.186	ENSTSYG00000007898	DDX54	94	82.467	Carlito_syrichta
ENSMUSG00000029599	Ddx54	93	84.191	ENSCAPG00000001482	DDX54	95	84.069	Cavia_aperea
ENSMUSG00000029599	Ddx54	100	84.886	ENSCPOG00000020649	DDX54	100	84.773	Cavia_porcellus
ENSMUSG00000029599	Ddx54	100	84.109	ENSCCAG00000022625	DDX54	100	84.109	Cebus_capucinus
ENSMUSG00000029599	Ddx54	100	82.938	ENSCATG00000041943	DDX54	100	83.164	Cercocebus_atys
ENSMUSG00000029599	Ddx54	100	83.295	ENSCLAG00000010748	DDX54	100	83.066	Chinchilla_lanigera
ENSMUSG00000029599	Ddx54	99	78.524	ENSCSAG00000002432	DDX54	93	81.382	Chlorocebus_sabaeus
ENSMUSG00000029599	Ddx54	75	64.487	ENSCPBG00000017982	DDX54	85	64.425	Chrysemys_picta_bellii
ENSMUSG00000029599	Ddx54	86	52.542	ENSCING00000004789	-	94	52.375	Ciona_intestinalis
ENSMUSG00000029599	Ddx54	88	51.866	ENSCSAVG00000008916	-	98	67.470	Ciona_savignyi
ENSMUSG00000029599	Ddx54	93	82.292	ENSCANG00000020637	DDX54	100	82.292	Colobus_angolensis_palliatus
ENSMUSG00000029599	Ddx54	100	91.895	ENSCGRG00001014803	Ddx54	100	91.895	Cricetulus_griseus_chok1gshd
ENSMUSG00000029599	Ddx54	100	92.009	ENSCGRG00000002827	Ddx54	100	92.009	Cricetulus_griseus_crigri
ENSMUSG00000029599	Ddx54	95	60.685	ENSCSEG00000016462	ddx54	98	60.905	Cynoglossus_semilaevis
ENSMUSG00000029599	Ddx54	97	61.066	ENSCVAG00000022404	ddx54	98	61.047	Cyprinodon_variegatus
ENSMUSG00000029599	Ddx54	97	63.415	ENSDARG00000105286	ddx54	98	63.531	Danio_rerio
ENSMUSG00000029599	Ddx54	100	83.543	ENSDNOG00000032913	DDX54	100	83.543	Dasypus_novemcinctus
ENSMUSG00000029599	Ddx54	80	83.238	ENSDORG00000003399	Ddx54	95	83.095	Dipodomys_ordii
ENSMUSG00000029599	Ddx54	80	45.306	FBgn0052344	CG32344	88	44.593	Drosophila_melanogaster
ENSMUSG00000029599	Ddx54	50	95.890	ENSETEG00000008430	-	53	95.890	Echinops_telfairi
ENSMUSG00000029599	Ddx54	80	58.741	ENSEBUG00000008886	ddx54	97	59.227	Eptatretus_burgeri
ENSMUSG00000029599	Ddx54	100	76.217	ENSEASG00005009501	DDX54	100	75.716	Equus_asinus_asinus
ENSMUSG00000029599	Ddx54	100	83.805	ENSECAG00000012890	DDX54	100	84.258	Equus_caballus
ENSMUSG00000029599	Ddx54	68	94.937	ENSEEUG00000008296	-	61	94.937	Erinaceus_europaeus
ENSMUSG00000029599	Ddx54	96	61.610	ENSELUG00000013533	ddx54	98	61.938	Esox_lucius
ENSMUSG00000029599	Ddx54	100	82.841	ENSFCAG00000027806	DDX54	100	83.750	Felis_catus
ENSMUSG00000029599	Ddx54	91	71.375	ENSFALG00000007737	DDX54	100	71.072	Ficedula_albicollis
ENSMUSG00000029599	Ddx54	90	88.503	ENSFDAG00000019953	DDX54	100	87.368	Fukomys_damarensis
ENSMUSG00000029599	Ddx54	97	61.324	ENSFHEG00000018425	ddx54	98	61.305	Fundulus_heteroclitus
ENSMUSG00000029599	Ddx54	94	59.308	ENSGMOG00000011746	ddx54	98	59.951	Gadus_morhua
ENSMUSG00000029599	Ddx54	93	70.617	ENSGALG00000007490	DDX54	97	69.528	Gallus_gallus
ENSMUSG00000029599	Ddx54	96	60.824	ENSGAFG00000010336	ddx54	98	61.249	Gambusia_affinis
ENSMUSG00000029599	Ddx54	93	59.811	ENSGACG00000016793	ddx54	95	60.095	Gasterosteus_aculeatus
ENSMUSG00000029599	Ddx54	94	70.109	ENSGAGG00000022803	DDX54	100	69.420	Gopherus_agassizii
ENSMUSG00000029599	Ddx54	100	84.520	ENSGGOG00000010414	DDX54	100	83.597	Gorilla_gorilla
ENSMUSG00000029599	Ddx54	100	84.528	ENSHGLG00000014411	DDX54	100	84.528	Heterocephalus_glaber_female
ENSMUSG00000029599	Ddx54	100	83.878	ENSHGLG00100018511	DDX54	100	84.528	Heterocephalus_glaber_male
ENSMUSG00000029599	Ddx54	96	62.134	ENSHCOG00000019287	ddx54	98	61.899	Hippocampus_comes
ENSMUSG00000029599	Ddx54	96	62.033	ENSIPUG00000015556	Ddx54	98	62.033	Ictalurus_punctatus
ENSMUSG00000029599	Ddx54	86	85.639	ENSSTOG00000004068	DDX54	100	85.457	Ictidomys_tridecemlineatus
ENSMUSG00000029599	Ddx54	99	88.297	ENSJJAG00000015712	Ddx54	100	88.000	Jaculus_jaculus
ENSMUSG00000029599	Ddx54	97	61.332	ENSKMAG00000017520	ddx54	98	61.702	Kryptolebias_marmoratus
ENSMUSG00000029599	Ddx54	96	59.065	ENSLBEG00000019480	ddx54	98	60.395	Labrus_bergylta
ENSMUSG00000029599	Ddx54	95	66.192	ENSLACG00000008944	DDX54	96	65.578	Latimeria_chalumnae
ENSMUSG00000029599	Ddx54	96	65.176	ENSLOCG00000008485	ddx54	98	65.012	Lepisosteus_oculatus
ENSMUSG00000029599	Ddx54	89	74.222	ENSLAFG00000027782	DDX54	100	74.720	Loxodonta_africana
ENSMUSG00000029599	Ddx54	100	83.070	ENSMFAG00000043636	DDX54	100	83.747	Macaca_fascicularis
ENSMUSG00000029599	Ddx54	100	83.070	ENSMMUG00000021795	DDX54	100	83.183	Macaca_mulatta
ENSMUSG00000029599	Ddx54	100	76.524	ENSMNEG00000043605	DDX54	100	76.637	Macaca_nemestrina
ENSMUSG00000029599	Ddx54	96	80.539	ENSMLEG00000038981	DDX54	98	79.517	Mandrillus_leucophaeus
ENSMUSG00000029599	Ddx54	97	61.965	ENSMAMG00000012784	ddx54	98	62.456	Mastacembelus_armatus
ENSMUSG00000029599	Ddx54	97	61.988	ENSMZEG00005018773	ddx54	98	61.972	Maylandia_zebra
ENSMUSG00000029599	Ddx54	93	69.748	ENSMGAG00000009183	DDX54	100	68.953	Meleagris_gallopavo
ENSMUSG00000029599	Ddx54	100	91.324	ENSMAUG00000011051	Ddx54	100	91.210	Mesocricetus_auratus
ENSMUSG00000029599	Ddx54	100	83.618	ENSMICG00000012217	DDX54	100	83.276	Microcebus_murinus
ENSMUSG00000029599	Ddx54	100	91.438	ENSMOCG00000010835	Ddx54	100	91.324	Microtus_ochrogaster
ENSMUSG00000029599	Ddx54	94	61.325	ENSMMOG00000009634	ddx54	98	60.777	Mola_mola
ENSMUSG00000029599	Ddx54	95	75.388	ENSMODG00000003413	DDX54	99	75.326	Monodelphis_domestica
ENSMUSG00000029599	Ddx54	96	63.146	ENSMALG00000022098	ddx54	98	62.911	Monopterus_albus
ENSMUSG00000029599	Ddx54	100	98.290	MGP_CAROLIEiJ_G0027665	Ddx54	100	98.290	Mus_caroli
ENSMUSG00000029599	Ddx54	100	97.149	MGP_PahariEiJ_G0024247	Ddx54	100	97.149	Mus_pahari
ENSMUSG00000029599	Ddx54	100	99.087	MGP_SPRETEiJ_G0028665	Ddx54	100	99.087	Mus_spretus
ENSMUSG00000029599	Ddx54	100	83.541	ENSMPUG00000002574	DDX54	100	83.995	Mustela_putorius_furo
ENSMUSG00000029599	Ddx54	100	87.159	ENSNGAG00000021313	Ddx54	100	87.273	Nannospalax_galili
ENSMUSG00000029599	Ddx54	66	78.500	ENSNBRG00000005588	ddx54	74	78.589	Neolamprologus_brichardi
ENSMUSG00000029599	Ddx54	100	84.790	ENSNLEG00000000162	DDX54	100	84.109	Nomascus_leucogenys
ENSMUSG00000029599	Ddx54	80	76.614	ENSMEUG00000015392	DDX54	98	78.254	Notamacropus_eugenii
ENSMUSG00000029599	Ddx54	91	77.719	ENSOPRG00000012000	DDX54	92	76.954	Ochotona_princeps
ENSMUSG00000029599	Ddx54	100	80.774	ENSODEG00000014863	DDX54	100	80.546	Octodon_degus
ENSMUSG00000029599	Ddx54	100	83.051	ENSOCUG00000008932	DDX54	100	82.805	Oryctolagus_cuniculus
ENSMUSG00000029599	Ddx54	95	61.557	ENSORLG00000007385	ddx54	97	61.085	Oryzias_latipes
ENSMUSG00000029599	Ddx54	95	62.102	ENSORLG00020000858	ddx54	97	61.439	Oryzias_latipes_hni
ENSMUSG00000029599	Ddx54	95	61.557	ENSORLG00015006956	ddx54	97	61.085	Oryzias_latipes_hsok
ENSMUSG00000029599	Ddx54	94	62.395	ENSOMEG00000003663	ddx54	98	61.871	Oryzias_melastigma
ENSMUSG00000029599	Ddx54	100	84.510	ENSOGAG00000004210	DDX54	100	84.852	Otolemur_garnettii
ENSMUSG00000029599	Ddx54	100	83.560	ENSOARG00000008363	DDX54	100	83.070	Ovis_aries
ENSMUSG00000029599	Ddx54	100	83.089	ENSPPAG00000042178	DDX54	100	82.976	Pan_paniscus
ENSMUSG00000029599	Ddx54	100	81.250	ENSPPRG00000005223	DDX54	100	82.293	Panthera_pardus
ENSMUSG00000029599	Ddx54	73	73.850	ENSPTIG00000019728	DDX54	86	73.850	Panthera_tigris_altaica
ENSMUSG00000029599	Ddx54	100	83.710	ENSPTRG00000005483	DDX54	100	83.371	Pan_troglodytes
ENSMUSG00000029599	Ddx54	100	83.296	ENSPANG00000008883	DDX54	100	83.409	Papio_anubis
ENSMUSG00000029599	Ddx54	96	63.435	ENSPKIG00000018272	ddx54	96	63.435	Paramormyrops_kingsleyae
ENSMUSG00000029599	Ddx54	54	80.638	ENSPSIG00000005055	DDX54	96	80.467	Pelodiscus_sinensis
ENSMUSG00000029599	Ddx54	93	60.294	ENSPMGG00000010988	ddx54	99	60.220	Periophthalmus_magnuspinnatus
ENSMUSG00000029599	Ddx54	100	92.922	ENSPEMG00000016701	Ddx54	100	92.580	Peromyscus_maniculatus_bairdii
ENSMUSG00000029599	Ddx54	96	62.500	ENSPFOG00000019822	ddx54	97	62.618	Poecilia_formosa
ENSMUSG00000029599	Ddx54	96	61.710	ENSPLAG00000004530	ddx54	97	61.620	Poecilia_latipinna
ENSMUSG00000029599	Ddx54	96	61.593	ENSPMEG00000010803	ddx54	97	61.502	Poecilia_mexicana
ENSMUSG00000029599	Ddx54	96	61.557	ENSPREG00000014372	ddx54	97	61.557	Poecilia_reticulata
ENSMUSG00000029599	Ddx54	100	83.634	ENSPPYG00000004984	DDX54	100	84.086	Pongo_abelii
ENSMUSG00000029599	Ddx54	100	78.425	ENSPCAG00000008462	DDX54	100	78.311	Procavia_capensis
ENSMUSG00000029599	Ddx54	100	84.721	ENSPCOG00000006050	DDX54	100	84.835	Propithecus_coquereli
ENSMUSG00000029599	Ddx54	93	87.973	ENSPVAG00000017347	DDX54	100	73.265	Pteropus_vampyrus
ENSMUSG00000029599	Ddx54	96	59.836	ENSPNAG00000014459	ddx54	95	66.093	Pygocentrus_nattereri
ENSMUSG00000029599	Ddx54	100	95.423	ENSRNOG00000001377	Ddx54	96	95.423	Rattus_norvegicus
ENSMUSG00000029599	Ddx54	100	82.976	ENSRBIG00000032535	DDX54	100	82.976	Rhinopithecus_bieti
ENSMUSG00000029599	Ddx54	100	78.805	ENSRROG00000029557	DDX54	100	79.369	Rhinopithecus_roxellana
ENSMUSG00000029599	Ddx54	87	36.519	YDL031W	-	81	36.810	Saccharomyces_cerevisiae
ENSMUSG00000029599	Ddx54	100	83.673	ENSSBOG00000028194	DDX54	100	84.014	Saimiri_boliviensis_boliviensis
ENSMUSG00000029599	Ddx54	94	73.114	ENSSHAG00000015646	DDX54	100	73.876	Sarcophilus_harrisii
ENSMUSG00000029599	Ddx54	97	62.777	ENSSFOG00015014981	ddx54	98	62.441	Scleropages_formosus
ENSMUSG00000029599	Ddx54	94	59.011	ENSSMAG00000003210	ddx54	98	59.444	Scophthalmus_maximus
ENSMUSG00000029599	Ddx54	94	61.176	ENSSDUG00000004474	ddx54	98	60.945	Seriola_dumerili
ENSMUSG00000029599	Ddx54	95	60.140	ENSSLDG00000010380	ddx54	98	60.137	Seriola_lalandi_dorsalis
ENSMUSG00000029599	Ddx54	96	69.477	ENSSPUG00000014141	DDX54	97	68.921	Sphenodon_punctatus
ENSMUSG00000029599	Ddx54	91	62.469	ENSSPAG00000022918	ddx54	97	62.165	Stegastes_partitus
ENSMUSG00000029599	Ddx54	100	84.790	ENSSSCG00000009876	DDX54	100	84.563	Sus_scrofa
ENSMUSG00000029599	Ddx54	92	70.074	ENSTGUG00000009126	DDX54	100	69.533	Taeniopygia_guttata
ENSMUSG00000029599	Ddx54	96	60.900	ENSTRUG00000014939	ddx54	98	60.669	Takifugu_rubripes
ENSMUSG00000029599	Ddx54	96	62.368	ENSTNIG00000009037	ddx54	98	62.012	Tetraodon_nigroviridis
ENSMUSG00000029599	Ddx54	73	93.462	ENSTBEG00000003783	DDX54	79	93.462	Tupaia_belangeri
ENSMUSG00000029599	Ddx54	97	80.958	ENSTTRG00000016678	DDX54	100	80.452	Tursiops_truncatus
ENSMUSG00000029599	Ddx54	100	84.169	ENSUAMG00000028387	DDX54	100	83.446	Ursus_americanus
ENSMUSG00000029599	Ddx54	84	88.761	ENSUMAG00000010245	DDX54	93	94.026	Ursus_maritimus
ENSMUSG00000029599	Ddx54	100	84.694	ENSVVUG00000010212	DDX54	100	84.580	Vulpes_vulpes
ENSMUSG00000029599	Ddx54	98	63.079	ENSXETG00000016410	ddx54	98	63.443	Xenopus_tropicalis
ENSMUSG00000029599	Ddx54	95	61.848	ENSXCOG00000002909	ddx54	97	61.675	Xiphophorus_couchianus
ENSMUSG00000029599	Ddx54	95	61.775	ENSXMAG00000005312	ddx54	97	61.538	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003714	transcription corepressor activity	-	ISO	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004004	ATP-dependent RNA helicase activity	-	ISO	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005102	signaling receptor binding	-	ISO	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0006396	RNA processing	-	ISO	Process
GO:0016070	RNA metabolic process	-	ISO	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0030331	estrogen receptor binding	-	ISO	Function