EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000029624 (Gene tree)
Gene ID: 71799
Gene Symbol: Ptcd1
Alias: 1110069M14Rik
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 19595 bases
Position: chr5:145147514-145167108
Accession: 1919049
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000031628	PPR	PF01535.20	2e-17	1	2
ENSMUSP00000031628	PPR	PF01535.20	2e-17	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000161390	-	273	-	ENSMUSP00000125276	20 (aa)	-	E0CXI1
ENSMUST00000031628	-	3087	-	ENSMUSP00000031628	695 (aa)	-	Q8C2E4

Gene Model

Click here to download ENSMUSG00000029624's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029624's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029624	Ptcd1	99	73.882	ENSG00000106246	PTCD1	99	73.882	Homo_sapiens
ENSMUSG00000029624	Ptcd1	99	73.882	ENSG00000248919	ATP5MF-PTCD1	92	73.882	Homo_sapiens
ENSMUSG00000029624	Ptcd1	86	45.124	ENSAPOG00000010679	ptcd1	91	44.628	Acanthochromis_polyacanthus
ENSMUSG00000029624	Ptcd1	99	77.525	ENSAMEG00000006224	-	93	77.383	Ailuropoda_melanoleuca
ENSMUSG00000029624	Ptcd1	88	49.678	ENSACIG00000017861	ptcd1	88	48.875	Amphilophus_citrinellus
ENSMUSG00000029624	Ptcd1	85	46.667	ENSAOCG00000020741	-	83	46.434	Amphiprion_ocellaris
ENSMUSG00000029624	Ptcd1	80	46.441	ENSAOCG00000022617	ptcd1	82	46.441	Amphiprion_ocellaris
ENSMUSG00000029624	Ptcd1	85	46.833	ENSAPEG00000022632	ptcd1	83	46.600	Amphiprion_percula
ENSMUSG00000029624	Ptcd1	88	48.529	ENSATEG00000007016	ptcd1	84	48.856	Anabas_testudineus
ENSMUSG00000029624	Ptcd1	87	58.824	ENSAPLG00000006862	-	97	58.320	Anas_platyrhynchos
ENSMUSG00000029624	Ptcd1	99	54.161	ENSACAG00000012871	-	92	54.119	Anolis_carolinensis
ENSMUSG00000029624	Ptcd1	98	73.440	ENSANAG00000035790	-	100	73.295	Aotus_nancymaae
ENSMUSG00000029624	Ptcd1	89	48.562	ENSACLG00000002824	ptcd1	85	48.083	Astatotilapia_calliptera
ENSMUSG00000029624	Ptcd1	86	48.172	ENSAMXG00000037292	ptcd1	87	47.687	Astyanax_mexicanus
ENSMUSG00000029624	Ptcd1	99	75.466	ENSBTAG00000020440	-	86	75.323	Bos_taurus
ENSMUSG00000029624	Ptcd1	99	74.138	ENSCJAG00000015815	-	99	74.138	Callithrix_jacchus
ENSMUSG00000029624	Ptcd1	99	76.580	ENSCAFG00000015055	-	92	76.437	Canis_familiaris
ENSMUSG00000029624	Ptcd1	99	76.580	ENSCAFG00020014480	-	92	76.437	Canis_lupus_dingo
ENSMUSG00000029624	Ptcd1	99	75.252	ENSCHIG00000027000	-	98	75.108	Capra_hircus
ENSMUSG00000029624	Ptcd1	99	75.142	ENSTSYG00000029495	-	99	75.142	Carlito_syrichta
ENSMUSG00000029624	Ptcd1	93	76.110	ENSCAPG00000014660	-	99	75.957	Cavia_aperea
ENSMUSG00000029624	Ptcd1	99	75.036	ENSCPOG00000001780	-	99	74.893	Cavia_porcellus
ENSMUSG00000029624	Ptcd1	99	72.989	ENSCCAG00000034025	-	99	73.458	Cebus_capucinus
ENSMUSG00000029624	Ptcd1	99	74.459	ENSCATG00000040859	-	99	74.459	Cercocebus_atys
ENSMUSG00000029624	Ptcd1	99	75.469	ENSCLAG00000006354	-	99	75.107	Chinchilla_lanigera
ENSMUSG00000029624	Ptcd1	92	74.184	ENSCSAG00000017794	-	95	74.184	Chlorocebus_sabaeus
ENSMUSG00000029624	Ptcd1	86	59.019	ENSCPBG00000020866	-	85	59.019	Chrysemys_picta_bellii
ENSMUSG00000029624	Ptcd1	83	30.236	ENSCING00000007717	-	73	39.252	Ciona_intestinalis
ENSMUSG00000029624	Ptcd1	99	73.661	ENSCANG00000023441	-	99	73.661	Colobus_angolensis_palliatus
ENSMUSG00000029624	Ptcd1	99	83.143	ENSCGRG00001023686	Ptcd1	99	83.143	Cricetulus_griseus_chok1gshd
ENSMUSG00000029624	Ptcd1	99	82.386	ENSCGRG00000015031	Ptcd1	99	82.386	Cricetulus_griseus_crigri
ENSMUSG00000029624	Ptcd1	87	45.738	ENSCSEG00000002378	ptcd1	83	45.990	Cynoglossus_semilaevis
ENSMUSG00000029624	Ptcd1	90	46.311	ENSCVAG00000015826	ptcd1	90	45.137	Cyprinodon_variegatus
ENSMUSG00000029624	Ptcd1	90	46.530	ENSCVAG00000003621	ptcd1	92	45.972	Cyprinodon_variegatus
ENSMUSG00000029624	Ptcd1	87	49.757	ENSDARG00000076176	ptcd1	88	49.757	Danio_rerio
ENSMUSG00000029624	Ptcd1	99	73.796	ENSDNOG00000009957	-	99	73.513	Dasypus_novemcinctus
ENSMUSG00000029624	Ptcd1	99	74.676	ENSDORG00000000740	Ptcd1	100	74.820	Dipodomys_ordii
ENSMUSG00000029624	Ptcd1	90	41.108	ENSEBUG00000014515	ptcd1	96	41.885	Eptatretus_burgeri
ENSMUSG00000029624	Ptcd1	99	77.260	ENSEASG00005002480	-	99	77.260	Equus_asinus_asinus
ENSMUSG00000029624	Ptcd1	99	77.542	ENSECAG00000016617	-	99	77.542	Equus_caballus
ENSMUSG00000029624	Ptcd1	85	47.258	ENSELUG00000016517	ptcd1	82	46.452	Esox_lucius
ENSMUSG00000029624	Ptcd1	99	77.077	ENSFCAG00000015069	-	99	76.934	Felis_catus
ENSMUSG00000029624	Ptcd1	87	59.355	ENSFALG00000013803	-	87	59.141	Ficedula_albicollis
ENSMUSG00000029624	Ptcd1	99	75.358	ENSFDAG00000006393	-	99	75.358	Fukomys_damarensis
ENSMUSG00000029624	Ptcd1	78	46.812	ENSFHEG00000012491	ptcd1	90	46.812	Fundulus_heteroclitus
ENSMUSG00000029624	Ptcd1	84	46.154	ENSGMOG00000007639	ptcd1	93	46.062	Gadus_morhua
ENSMUSG00000029624	Ptcd1	87	56.535	ENSGALG00000004711	-	88	55.814	Gallus_gallus
ENSMUSG00000029624	Ptcd1	84	47.980	ENSGAFG00000013175	ptcd1	82	47.078	Gambusia_affinis
ENSMUSG00000029624	Ptcd1	84	49.747	ENSGACG00000016607	ptcd1	89	48.983	Gasterosteus_aculeatus
ENSMUSG00000029624	Ptcd1	88	56.960	ENSGAGG00000021832	-	93	56.960	Gopherus_agassizii
ENSMUSG00000029624	Ptcd1	99	73.882	ENSGGOG00000015123	-	99	73.882	Gorilla_gorilla
ENSMUSG00000029624	Ptcd1	89	48.470	ENSHBUG00000018275	ptcd1	85	47.987	Haplochromis_burtoni
ENSMUSG00000029624	Ptcd1	99	76.149	ENSHGLG00000017621	-	99	75.862	Heterocephalus_glaber_female
ENSMUSG00000029624	Ptcd1	99	76.149	ENSHGLG00100007218	-	99	75.862	Heterocephalus_glaber_male
ENSMUSG00000029624	Ptcd1	85	46.090	ENSHCOG00000010784	ptcd1	85	45.743	Hippocampus_comes
ENSMUSG00000029624	Ptcd1	99	76.170	ENSSTOG00000001682	-	99	76.028	Ictidomys_tridecemlineatus
ENSMUSG00000029624	Ptcd1	99	77.633	ENSJJAG00000000319	Ptcd1	99	77.345	Jaculus_jaculus
ENSMUSG00000029624	Ptcd1	96	45.015	ENSKMAG00000008708	ptcd1	93	44.868	Kryptolebias_marmoratus
ENSMUSG00000029624	Ptcd1	87	46.850	ENSLBEG00000008061	ptcd1	82	47.833	Labrus_bergylta
ENSMUSG00000029624	Ptcd1	87	57.166	ENSLACG00000011172	ptcd1	85	57.166	Latimeria_chalumnae
ENSMUSG00000029624	Ptcd1	89	52.778	ENSLOCG00000004833	ptcd1	93	53.589	Lepisosteus_oculatus
ENSMUSG00000029624	Ptcd1	99	70.963	ENSLAFG00000002588	-	99	70.739	Loxodonta_africana
ENSMUSG00000029624	Ptcd1	99	74.459	ENSMFAG00000041324	-	99	74.459	Macaca_fascicularis
ENSMUSG00000029624	Ptcd1	99	74.315	ENSMMUG00000030408	-	99	74.315	Macaca_mulatta
ENSMUSG00000029624	Ptcd1	99	74.315	ENSMNEG00000043786	-	99	74.315	Macaca_nemestrina
ENSMUSG00000029624	Ptcd1	99	56.133	ENSMLEG00000031179	-	98	58.153	Mandrillus_leucophaeus
ENSMUSG00000029624	Ptcd1	85	48.567	ENSMAMG00000007623	ptcd1	81	48.818	Mastacembelus_armatus
ENSMUSG00000029624	Ptcd1	89	48.718	ENSMZEG00005012722	ptcd1	85	48.718	Maylandia_zebra
ENSMUSG00000029624	Ptcd1	99	53.521	ENSMGAG00000004211	-	92	53.239	Meleagris_gallopavo
ENSMUSG00000029624	Ptcd1	99	75.610	ENSMICG00000017428	-	99	75.466	Microcebus_murinus
ENSMUSG00000029624	Ptcd1	87	46.721	ENSMMOG00000020243	ptcd1	91	46.470	Mola_mola
ENSMUSG00000029624	Ptcd1	99	57.923	ENSMODG00000001350	-	99	57.473	Monodelphis_domestica
ENSMUSG00000029624	Ptcd1	89	48.408	ENSMALG00000018442	ptcd1	84	48.408	Monopterus_albus
ENSMUSG00000029624	Ptcd1	100	97.122	MGP_CAROLIEiJ_G0028011	Ptcd1	100	97.122	Mus_caroli
ENSMUSG00000029624	Ptcd1	99	93.948	MGP_PahariEiJ_G0024580	Ptcd1	99	93.948	Mus_pahari
ENSMUSG00000029624	Ptcd1	100	98.417	MGP_SPRETEiJ_G0029012	Ptcd1	100	98.417	Mus_spretus
ENSMUSG00000029624	Ptcd1	99	77.809	ENSMPUG00000016518	-	99	77.809	Mustela_putorius_furo
ENSMUSG00000029624	Ptcd1	99	76.956	ENSMLUG00000010994	-	93	78.174	Myotis_lucifugus
ENSMUSG00000029624	Ptcd1	89	49.042	ENSNBRG00000010079	ptcd1	87	49.353	Neolamprologus_brichardi
ENSMUSG00000029624	Ptcd1	81	74.645	ENSNLEG00000011060	-	98	74.645	Nomascus_leucogenys
ENSMUSG00000029624	Ptcd1	98	60.375	ENSMEUG00000006930	-	99	60.231	Notamacropus_eugenii
ENSMUSG00000029624	Ptcd1	89	73.810	ENSOPRG00000013647	-	88	73.810	Ochotona_princeps
ENSMUSG00000029624	Ptcd1	87	47.735	ENSONIG00000003168	ptcd1	99	47.249	Oreochromis_niloticus
ENSMUSG00000029624	Ptcd1	81	56.098	ENSOANG00000007728	-	74	56.506	Ornithorhynchus_anatinus
ENSMUSG00000029624	Ptcd1	99	72.911	ENSOCUG00000010584	-	97	72.767	Oryctolagus_cuniculus
ENSMUSG00000029624	Ptcd1	88	47.326	ENSORLG00000009275	ptcd1	87	47.222	Oryzias_latipes
ENSMUSG00000029624	Ptcd1	88	47.097	ENSORLG00020000988	ptcd1	87	47.403	Oryzias_latipes_hni
ENSMUSG00000029624	Ptcd1	88	46.850	ENSORLG00015010557	ptcd1	87	46.895	Oryzias_latipes_hsok
ENSMUSG00000029624	Ptcd1	90	47.218	ENSOMEG00000020627	ptcd1	91	46.900	Oryzias_melastigma
ENSMUSG00000029624	Ptcd1	99	72.103	ENSOGAG00000010877	-	99	71.960	Otolemur_garnettii
ENSMUSG00000029624	Ptcd1	99	71.121	ENSOARG00000018676	-	99	70.977	Ovis_aries
ENSMUSG00000029624	Ptcd1	99	73.449	ENSPPAG00000036024	-	99	73.593	Pan_paniscus
ENSMUSG00000029624	Ptcd1	99	77.810	ENSPPRG00000003478	-	99	77.666	Panthera_pardus
ENSMUSG00000029624	Ptcd1	99	73.304	ENSPTRG00000019452	-	99	73.449	Pan_troglodytes
ENSMUSG00000029624	Ptcd1	99	74.459	ENSPANG00000016730	-	99	74.459	Papio_anubis
ENSMUSG00000029624	Ptcd1	85	53.667	ENSPKIG00000014215	ptcd1	86	53.756	Paramormyrops_kingsleyae
ENSMUSG00000029624	Ptcd1	85	58.333	ENSPSIG00000011184	-	100	58.500	Pelodiscus_sinensis
ENSMUSG00000029624	Ptcd1	74	42.115	ENSPMAG00000009667	ptcd1	100	42.115	Petromyzon_marinus
ENSMUSG00000029624	Ptcd1	86	65.210	ENSPCIG00000024778	-	90	61.976	Phascolarctos_cinereus
ENSMUSG00000029624	Ptcd1	91	45.497	ENSPFOG00000004458	ptcd1	87	44.632	Poecilia_formosa
ENSMUSG00000029624	Ptcd1	91	45.497	ENSPLAG00000011051	ptcd1	88	44.684	Poecilia_latipinna
ENSMUSG00000029624	Ptcd1	91	45.342	ENSPMEG00000020547	ptcd1	87	44.632	Poecilia_mexicana
ENSMUSG00000029624	Ptcd1	83	48.294	ENSPREG00000000059	ptcd1	83	47.731	Poecilia_reticulata
ENSMUSG00000029624	Ptcd1	93	75.270	ENSPPYG00000017377	-	98	75.270	Pongo_abelii
ENSMUSG00000029624	Ptcd1	80	72.381	ENSPCAG00000001852	-	86	72.381	Procavia_capensis
ENSMUSG00000029624	Ptcd1	99	75.606	ENSPCOG00000018596	-	99	75.464	Propithecus_coquereli
ENSMUSG00000029624	Ptcd1	67	85.000	ENSPVAG00000007529	-	73	85.000	Pteropus_vampyrus
ENSMUSG00000029624	Ptcd1	89	48.562	ENSPNYG00000019993	ptcd1	85	48.083	Pundamilia_nyererei
ENSMUSG00000029624	Ptcd1	93	49.405	ENSPNAG00000014931	ptcd1	98	48.777	Pygocentrus_nattereri
ENSMUSG00000029624	Ptcd1	100	88.345	ENSRNOG00000000987	Ptcd1	100	88.345	Rattus_norvegicus
ENSMUSG00000029624	Ptcd1	99	74.096	ENSRBIG00000043393	-	99	74.096	Rhinopithecus_bieti
ENSMUSG00000029624	Ptcd1	99	74.096	ENSRROG00000036420	-	99	74.096	Rhinopithecus_roxellana
ENSMUSG00000029624	Ptcd1	99	73.882	ENSSBOG00000024114	-	99	73.882	Saimiri_boliviensis_boliviensis
ENSMUSG00000029624	Ptcd1	92	59.174	ENSSHAG00000011376	-	99	59.293	Sarcophilus_harrisii
ENSMUSG00000029624	Ptcd1	88	53.968	ENSSFOG00015007909	ptcd1	84	53.968	Scleropages_formosus
ENSMUSG00000029624	Ptcd1	87	44.822	ENSSMAG00000000218	ptcd1	94	44.984	Scophthalmus_maximus
ENSMUSG00000029624	Ptcd1	95	45.306	ENSSDUG00000015671	ptcd1	94	45.037	Seriola_dumerili
ENSMUSG00000029624	Ptcd1	91	46.130	ENSSLDG00000014261	ptcd1	91	45.356	Seriola_lalandi_dorsalis
ENSMUSG00000029624	Ptcd1	91	55.235	ENSSPUG00000003540	-	89	55.083	Sphenodon_punctatus
ENSMUSG00000029624	Ptcd1	91	46.177	ENSSPAG00000011049	ptcd1	87	45.929	Stegastes_partitus
ENSMUSG00000029624	Ptcd1	92	77.031	ENSSSCG00000007622	-	98	76.000	Sus_scrofa
ENSMUSG00000029624	Ptcd1	88	58.699	ENSTGUG00000007563	-	99	58.862	Taeniopygia_guttata
ENSMUSG00000029624	Ptcd1	88	45.617	ENSTRUG00000013471	ptcd1	83	45.588	Takifugu_rubripes
ENSMUSG00000029624	Ptcd1	92	45.329	ENSTNIG00000008271	ptcd1	93	45.329	Tetraodon_nigroviridis
ENSMUSG00000029624	Ptcd1	99	73.894	ENSTBEG00000011021	-	99	73.752	Tupaia_belangeri
ENSMUSG00000029624	Ptcd1	99	73.707	ENSTTRG00000003006	-	99	73.420	Tursiops_truncatus
ENSMUSG00000029624	Ptcd1	99	77.952	ENSUAMG00000008049	-	99	77.809	Ursus_americanus
ENSMUSG00000029624	Ptcd1	99	77.201	ENSVVUG00000008836	-	99	77.056	Vulpes_vulpes
ENSMUSG00000029624	Ptcd1	94	50.835	ENSXETG00000009891	ptcd1	96	49.046	Xenopus_tropicalis
ENSMUSG00000029624	Ptcd1	91	45.866	ENSXMAG00000015540	ptcd1	87	45.086	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000049	tRNA binding	21873635.	IBA	Function
GO:0005739	mitochondrion	-	IEA	Component
GO:0005759	mitochondrial matrix	21873635.	IBA	Component
GO:0005759	mitochondrial matrix	-	ISO	Component
GO:0008033	tRNA processing	-	IEA	Process
GO:0042780	tRNA 3'-end processing	21873635.	IBA	Process