EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000029625 (Gene tree)
Gene ID
54188
Gene Symbol
Cpsf4
Alias
30kDa
Full Name
cleavage and polyadenylation specific factor 4
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
14829 bases
Position
chr5:145167213-145182041
Accession
1861602
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000125640zf-CCCHPF00642.241.5e-2012
ENSMUSP00000125640zf-CCCHPF00642.241.5e-2022
ENSMUSP00000124899zf-CCCHPF00642.243.9e-2012
ENSMUSP00000124899zf-CCCHPF00642.243.9e-2022
ENSMUSP00000124966zf-CCCHPF00642.244e-2012
ENSMUSP00000124966zf-CCCHPF00642.244e-2022
ENSMUSP00000125019zf-CCCHPF00642.247.6e-2012
ENSMUSP00000125019zf-CCCHPF00642.247.6e-2022
ENSMUSP00000069243zf-CCCHPF00642.243.1e-1512
ENSMUSP00000069243zf-CCCHPF00642.243.1e-1522
ENSMUSP00000069243zf-CCHCPF00098.237.1e-0611
ENSMUSP00000124899zf-CCHCPF00098.238.5e-0611
ENSMUSP00000124966zf-CCHCPF00098.238.6e-0611
ENSMUSP00000125019zf-CCHCPF00098.239.7e-0611
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000070487-1606-ENSMUSP00000069243211 (aa)-Q8BQZ5
ENSMUST00000160762-835-ENSMUSP00000125640208 (aa)-F7B6Z5
ENSMUST00000160629-1713-ENSMUSP00000124899243 (aa)-B2LVG5
ENSMUST00000160574-1204-ENSMUSP0000013791062 (aa)-M0QWM8
ENSMUST00000162244-1387-ENSMUSP00000124966244 (aa)-B2LVG6
ENSMUST00000160437-2971--- (aa)--
ENSMUST00000160422-1756XM_006504845ENSMUSP00000125019269 (aa)XP_006504908E0CXT7
Gene Model
Click here to download ENSMUSG00000029625's gene model file
Pathways
Pathway IDPathway NameSource
mmu03015mRNA surveillance pathwayKEGG
mmu05164Influenza AKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029625's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000029625Cpsf48652.358ENSMUSG00000018727Cpsf4l8262.400
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000029625Cpsf410099.257ENSG00000160917CPSF4100100.000Homo_sapiens
ENSMUSG00000029625Cpsf46774.725ENSAPOG00000004921cpsf410074.725Acanthochromis_polyacanthus
ENSMUSG00000029625Cpsf4100100.000ENSAMEG00000006252CPSF4100100.000Ailuropoda_melanoleuca
ENSMUSG00000029625Cpsf410087.295ENSACIG00000009248cpsf410087.295Amphilophus_citrinellus
ENSMUSG00000029625Cpsf410085.185ENSAOCG00000019616cpsf410085.185Amphiprion_ocellaris
ENSMUSG00000029625Cpsf410085.185ENSAPEG00000011679cpsf410085.185Amphiprion_percula
ENSMUSG00000029625Cpsf410085.200ENSATEG00000007010cpsf410085.425Anabas_testudineus
ENSMUSG00000029625Cpsf410093.309ENSACAG00000012941CPSF48993.309Anolis_carolinensis
ENSMUSG00000029625Cpsf410099.257ENSANAG00000021360CPSF410099.257Aotus_nancymaae
ENSMUSG00000029625Cpsf410083.704ENSACLG00000010374cpsf410083.704Astatotilapia_calliptera
ENSMUSG00000029625Cpsf410085.782ENSAMXG00000031647cpsf410086.256Astyanax_mexicanus
ENSMUSG00000029625Cpsf410099.177ENSBTAG00000002090CPSF410099.177Bos_taurus
ENSMUSG00000029625Cpsf410099.257ENSCJAG00000015826CPSF410099.257Callithrix_jacchus
ENSMUSG00000029625Cpsf410099.628ENSCAFG00000015036CPSF410099.628Canis_familiaris
ENSMUSG00000029625Cpsf410093.309ENSCAFG00020014462CPSF410093.309Canis_lupus_dingo
ENSMUSG00000029625Cpsf410099.257ENSCHIG00000014313CPSF410099.257Capra_hircus
ENSMUSG00000029625Cpsf410099.180ENSTSYG00000005712-10099.180Carlito_syrichta
ENSMUSG00000029625Cpsf410090.612ENSTSYG00000014604-10090.612Carlito_syrichta
ENSMUSG00000029625Cpsf48892.593ENSTSYG00000008195-9992.000Carlito_syrichta
ENSMUSG00000029625Cpsf481100.000ENSCAPG00000013881CPSF487100.000Cavia_aperea
ENSMUSG00000029625Cpsf4100100.000ENSCPOG00000001783CPSF4100100.000Cavia_porcellus
ENSMUSG00000029625Cpsf410099.257ENSCCAG00000028291CPSF410099.257Cebus_capucinus
ENSMUSG00000029625Cpsf410099.257ENSCATG00000038440CPSF410099.257Cercocebus_atys
ENSMUSG00000029625Cpsf410099.628ENSCLAG00000007050CPSF410099.628Chinchilla_lanigera
ENSMUSG00000029625Cpsf410099.257ENSCSAG00000017795CPSF410099.257Chlorocebus_sabaeus
ENSMUSG00000029625Cpsf48095.370ENSCPBG00000020869CPSF410095.370Chrysemys_picta_bellii
ENSMUSG00000029625Cpsf46484.962ENSCPBG00000010269-10080.723Chrysemys_picta_bellii
ENSMUSG00000029625Cpsf49755.939ENSCING00000021080-9756.299Ciona_intestinalis
ENSMUSG00000029625Cpsf49653.357ENSCSAVG00000011469-9753.025Ciona_savignyi
ENSMUSG00000029625Cpsf410099.257ENSCANG00000019384CPSF410099.257Colobus_angolensis_palliatus
ENSMUSG00000029625Cpsf4100100.000ENSCGRG00001024184Cpsf4100100.000Cricetulus_griseus_chok1gshd
ENSMUSG00000029625Cpsf4100100.000ENSCGRG00000013892Cpsf4100100.000Cricetulus_griseus_crigri
ENSMUSG00000029625Cpsf410084.834ENSCSEG00000019055cpsf410084.834Cynoglossus_semilaevis
ENSMUSG00000029625Cpsf410083.333ENSCVAG00000016528cpsf410083.333Cyprinodon_variegatus
ENSMUSG00000029625Cpsf410085.240ENSDARG00000020217cpsf410085.240Danio_rerio
ENSMUSG00000029625Cpsf410099.628ENSDNOG00000006344CPSF410099.628Dasypus_novemcinctus
ENSMUSG00000029625Cpsf48199.539ENSDORG00000000742Cpsf410099.539Dipodomys_ordii
ENSMUSG00000029625Cpsf410054.795FBgn0015621Clp9954.110Drosophila_melanogaster
ENSMUSG00000029625Cpsf477100.000ENSETEG00000002608CPSF470100.000Echinops_telfairi
ENSMUSG00000029625Cpsf49971.774ENSEBUG00000012552cpsf49870.445Eptatretus_burgeri
ENSMUSG00000029625Cpsf4100100.000ENSEASG00005002487CPSF4100100.000Equus_asinus_asinus
ENSMUSG00000029625Cpsf4100100.000ENSECAG00000007525CPSF4100100.000Equus_caballus
ENSMUSG00000029625Cpsf468100.000ENSEEUG00000002158CPSF473100.000Erinaceus_europaeus
ENSMUSG00000029625Cpsf410082.847ENSELUG00000011481cpsf410080.657Esox_lucius
ENSMUSG00000029625Cpsf4100100.000ENSFCAG00000015070CPSF4100100.000Felis_catus
ENSMUSG00000029625Cpsf410095.062ENSFALG00000013799CPSF410095.062Ficedula_albicollis
ENSMUSG00000029625Cpsf46856.977ENSFALG00000012906-10056.977Ficedula_albicollis
ENSMUSG00000029625Cpsf49099.177ENSFDAG00000014092CPSF410099.177Fukomys_damarensis
ENSMUSG00000029625Cpsf410083.333ENSFHEG00000010880cpsf410083.333Fundulus_heteroclitus
ENSMUSG00000029625Cpsf410080.233ENSGMOG00000002330cpsf410080.233Gadus_morhua
ENSMUSG00000029625Cpsf49938.421ENSGALG00000004441-9839.326Gallus_gallus
ENSMUSG00000029625Cpsf410095.062ENSGALG00000004714CPSF410095.062Gallus_gallus
ENSMUSG00000029625Cpsf410082.963ENSGAFG00000010580cpsf410082.963Gambusia_affinis
ENSMUSG00000029625Cpsf410082.283ENSGACG00000007792cpsf410082.283Gasterosteus_aculeatus
ENSMUSG00000029625Cpsf410095.539ENSGAGG00000021835CPSF410095.539Gopherus_agassizii
ENSMUSG00000029625Cpsf47576.923ENSGAGG00000020579-9281.212Gopherus_agassizii
ENSMUSG00000029625Cpsf410099.257ENSGGOG00000015131CPSF410099.257Gorilla_gorilla
ENSMUSG00000029625Cpsf410083.704ENSHBUG00000013699cpsf410083.704Haplochromis_burtoni
ENSMUSG00000029625Cpsf410099.526ENSHGLG00000017150CPSF410099.526Heterocephalus_glaber_female
ENSMUSG00000029625Cpsf410071.090ENSHGLG00100017302-10068.720Heterocephalus_glaber_male
ENSMUSG00000029625Cpsf48796.186ENSHGLG00100009215-10097.159Heterocephalus_glaber_male
ENSMUSG00000029625Cpsf410081.111ENSHCOG00000004397cpsf410079.623Hippocampus_comes
ENSMUSG00000029625Cpsf410084.133ENSIPUG00000017147cpsf410085.294Ictalurus_punctatus
ENSMUSG00000029625Cpsf4100100.000ENSSTOG00000001688CPSF4100100.000Ictidomys_tridecemlineatus
ENSMUSG00000029625Cpsf410099.628ENSJJAG00000019426Cpsf410099.628Jaculus_jaculus
ENSMUSG00000029625Cpsf410082.222ENSKMAG00000015642cpsf410082.222Kryptolebias_marmoratus
ENSMUSG00000029625Cpsf410065.854ENSLACG00000018470-10064.082Latimeria_chalumnae
ENSMUSG00000029625Cpsf410088.889ENSLACG00000010938CPSF410088.889Latimeria_chalumnae
ENSMUSG00000029625Cpsf410089.591ENSLOCG00000004814cpsf410089.591Lepisosteus_oculatus
ENSMUSG00000029625Cpsf410099.628ENSLAFG00000000159CPSF410099.628Loxodonta_africana
ENSMUSG00000029625Cpsf410099.257ENSMFAG00000001462CPSF410099.257Macaca_fascicularis
ENSMUSG00000029625Cpsf410099.257ENSMMUG00000019191CPSF410099.257Macaca_mulatta
ENSMUSG00000029625Cpsf410099.257ENSMNEG00000032306CPSF410099.257Macaca_nemestrina
ENSMUSG00000029625Cpsf410099.257ENSMLEG00000034721CPSF410099.257Mandrillus_leucophaeus
ENSMUSG00000029625Cpsf410084.074ENSMAMG00000006244cpsf410083.516Mastacembelus_armatus
ENSMUSG00000029625Cpsf410083.704ENSMZEG00005007515cpsf410083.704Maylandia_zebra
ENSMUSG00000029625Cpsf48694.737ENSMGAG00000004235CPSF410094.737Meleagris_gallopavo
ENSMUSG00000029625Cpsf4100100.000ENSMAUG00000021253Cpsf4100100.000Mesocricetus_auratus
ENSMUSG00000029625Cpsf410099.257ENSMICG00000017429CPSF410099.257Microcebus_murinus
ENSMUSG00000029625Cpsf4100100.000ENSMOCG00000014901Cpsf4100100.000Microtus_ochrogaster
ENSMUSG00000029625Cpsf410084.834ENSMMOG00000001813cpsf410084.834Mola_mola
ENSMUSG00000029625Cpsf410097.026ENSMODG00000001367CPSF410097.026Monodelphis_domestica
ENSMUSG00000029625Cpsf410082.963ENSMALG00000012611cpsf410082.963Monopterus_albus
ENSMUSG00000029625Cpsf4100100.000MGP_CAROLIEiJ_G0028012Cpsf4100100.000Mus_caroli
ENSMUSG00000029625Cpsf4100100.000MGP_PahariEiJ_G0024581Cpsf4100100.000Mus_pahari
ENSMUSG00000029625Cpsf410099.628MGP_SPRETEiJ_G0029013Cpsf410099.628Mus_spretus
ENSMUSG00000029625Cpsf4100100.000ENSMPUG00000016508CPSF4100100.000Mustela_putorius_furo
ENSMUSG00000029625Cpsf48699.043ENSMLUG00000010980CPSF410099.043Myotis_lucifugus
ENSMUSG00000029625Cpsf410099.628ENSNGAG00000001567Cpsf410099.628Nannospalax_galili
ENSMUSG00000029625Cpsf49183.333ENSNBRG00000003943cpsf49883.333Neolamprologus_brichardi
ENSMUSG00000029625Cpsf410099.180ENSNLEG00000011074CPSF410099.180Nomascus_leucogenys
ENSMUSG00000029625Cpsf410097.026ENSMEUG00000006955CPSF410097.026Notamacropus_eugenii
ENSMUSG00000029625Cpsf410099.257ENSOPRG00000013663CPSF410099.257Ochotona_princeps
ENSMUSG00000029625Cpsf410075.092ENSODEG00000009779-10075.092Octodon_degus
ENSMUSG00000029625Cpsf49884.583ENSODEG00000018283-9184.583Octodon_degus
ENSMUSG00000029625Cpsf4100100.000ENSODEG00000011181-100100.000Octodon_degus
ENSMUSG00000029625Cpsf410083.704ENSONIG00000008495cpsf410083.704Oreochromis_niloticus
ENSMUSG00000029625Cpsf48795.319ENSOANG00000007729CPSF410095.319Ornithorhynchus_anatinus
ENSMUSG00000029625Cpsf410055.036ENSOANG00000009568-10052.878Ornithorhynchus_anatinus
ENSMUSG00000029625Cpsf410099.257ENSOCUG00000002437CPSF47099.257Oryctolagus_cuniculus
ENSMUSG00000029625Cpsf410083.271ENSORLG00000022798cpsf410083.271Oryzias_latipes
ENSMUSG00000029625Cpsf410083.271ENSORLG00020008548cpsf410083.271Oryzias_latipes_hni
ENSMUSG00000029625Cpsf410082.900ENSORLG00015019575cpsf410082.900Oryzias_latipes_hsok
ENSMUSG00000029625Cpsf410083.886ENSOMEG00000005176cpsf410083.886Oryzias_melastigma
ENSMUSG00000029625Cpsf410099.628ENSOGAG00000010884CPSF410099.628Otolemur_garnettii
ENSMUSG00000029625Cpsf410087.912ENSOARG00000018668CPSF410087.546Ovis_aries
ENSMUSG00000029625Cpsf410098.885ENSPPAG00000043355CPSF410098.885Pan_paniscus
ENSMUSG00000029625Cpsf4100100.000ENSPPRG00000003134CPSF4100100.000Panthera_pardus
ENSMUSG00000029625Cpsf49099.587ENSPTIG00000005604CPSF49099.587Panthera_tigris_altaica
ENSMUSG00000029625Cpsf410098.885ENSPTRG00000019453CPSF410098.885Pan_troglodytes
ENSMUSG00000029625Cpsf410099.257ENSPANG00000023123CPSF410099.257Papio_anubis
ENSMUSG00000029625Cpsf410083.942ENSPKIG00000014278cpsf410083.942Paramormyrops_kingsleyae
ENSMUSG00000029625Cpsf48094.907ENSPSIG00000011229CPSF410094.907Pelodiscus_sinensis
ENSMUSG00000029625Cpsf47966.321ENSPSIG00000018198-10066.321Pelodiscus_sinensis
ENSMUSG00000029625Cpsf410081.481ENSPMGG00000017735cpsf410078.862Periophthalmus_magnuspinnatus
ENSMUSG00000029625Cpsf4100100.000ENSPEMG00000004508Cpsf4100100.000Peromyscus_maniculatus_bairdii
ENSMUSG00000029625Cpsf410097.026ENSPCIG00000024776CPSF410097.026Phascolarctos_cinereus
ENSMUSG00000029625Cpsf410082.963ENSPFOG00000014912cpsf410082.963Poecilia_formosa
ENSMUSG00000029625Cpsf410079.675ENSPLAG00000009599cpsf410079.268Poecilia_latipinna
ENSMUSG00000029625Cpsf410082.963ENSPMEG00000009790cpsf410082.963Poecilia_mexicana
ENSMUSG00000029625Cpsf410082.222ENSPREG00000018166cpsf410078.889Poecilia_reticulata
ENSMUSG00000029625Cpsf48798.291ENSPPYG00000017378CPSF410098.291Pongo_abelii
ENSMUSG00000029625Cpsf410098.885ENSPCAG00000001892CPSF410098.885Procavia_capensis
ENSMUSG00000029625Cpsf410099.628ENSPCOG00000012771CPSF410099.628Propithecus_coquereli
ENSMUSG00000029625Cpsf410093.309ENSPVAG00000007531CPSF410093.309Pteropus_vampyrus
ENSMUSG00000029625Cpsf410083.704ENSPNYG00000018559cpsf410083.704Pundamilia_nyererei
ENSMUSG00000029625Cpsf410086.347ENSPNAG00000003736cpsf410087.085Pygocentrus_nattereri
ENSMUSG00000029625Cpsf4100100.000ENSRNOG00000000985Cpsf4100100.000Rattus_norvegicus
ENSMUSG00000029625Cpsf48799.145ENSRBIG00000033886CPSF410099.145Rhinopithecus_bieti
ENSMUSG00000029625Cpsf410099.180ENSRROG00000040431CPSF410099.180Rhinopithecus_roxellana
ENSMUSG00000029625Cpsf410099.257ENSSBOG00000020493CPSF410099.257Saimiri_boliviensis_boliviensis
ENSMUSG00000029625Cpsf410097.026ENSSHAG00000011533CPSF410097.026Sarcophilus_harrisii
ENSMUSG00000029625Cpsf410085.145ENSSFOG00015007883cpsf410085.870Scleropages_formosus
ENSMUSG00000029625Cpsf410086.531ENSSMAG00000006374cpsf410086.531Scophthalmus_maximus
ENSMUSG00000029625Cpsf410083.704ENSSDUG00000018887cpsf410083.704Seriola_dumerili
ENSMUSG00000029625Cpsf410083.704ENSSLDG00000019078cpsf410083.704Seriola_lalandi_dorsalis
ENSMUSG00000029625Cpsf48799.573ENSSARG00000012416CPSF410099.573Sorex_araneus
ENSMUSG00000029625Cpsf410094.052ENSSPUG00000003549CPSF410094.052Sphenodon_punctatus
ENSMUSG00000029625Cpsf49564.831ENSSPUG00000014803-9764.407Sphenodon_punctatus
ENSMUSG00000029625Cpsf410087.705ENSSPAG00000006174cpsf410087.705Stegastes_partitus
ENSMUSG00000029625Cpsf410099.590ENSSSCG00000026896CPSF410099.590Sus_scrofa
ENSMUSG00000029625Cpsf410093.878ENSTGUG00000007552CPSF410093.878Taeniopygia_guttata
ENSMUSG00000029625Cpsf410080.952ENSTRUG00000024220cpsf410080.952Takifugu_rubripes
ENSMUSG00000029625Cpsf410080.000ENSTNIG00000006265cpsf410081.481Tetraodon_nigroviridis
ENSMUSG00000029625Cpsf48789.744ENSTBEG00000011406CPSF410089.744Tupaia_belangeri
ENSMUSG00000029625Cpsf410078.439ENSTTRG00000003007CPSF410078.439Tursiops_truncatus
ENSMUSG00000029625Cpsf491100.000ENSUAMG00000008051CPSF485100.000Ursus_americanus
ENSMUSG00000029625Cpsf4100100.000ENSUMAG00000009474CPSF4100100.000Ursus_maritimus
ENSMUSG00000029625Cpsf410099.590ENSVVUG00000008824CPSF410099.590Vulpes_vulpes
ENSMUSG00000029625Cpsf49961.278ENSXETG00000004641cpsf4l9960.821Xenopus_tropicalis
ENSMUSG00000029625Cpsf410088.172ENSXETG00000009892cpsf410088.172Xenopus_tropicalis
ENSMUSG00000029625Cpsf410084.360ENSXCOG00000016040cpsf410084.360Xiphophorus_couchianus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0005634nucleus-IEAComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005847mRNA cleavage and polyadenylation specificity factor complex21873635.IBAComponent
GO:0005847mRNA cleavage and polyadenylation specificity factor complex-ISOComponent
GO:0006397mRNA processing-IEAProcess
GO:0008270zinc ion binding-IEAFunction
GO:0043231intracellular membrane-bounded organelle-ISOComponent
GO:0046872metal ion binding-IEAFunction
GO:0098789pre-mRNA cleavage required for polyadenylation21873635.IBAProcess

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