EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000029642 (Gene tree)
Gene ID: 20018
Gene Symbol: Polr1d
Alias: 1110003G10Rik|16kDa|Rpo1-3|mRPA16
Full Name: polymerase (RNA) I polypeptide D
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 34548 bases
Position: chr5:147077050-147111597
Accession: 108403
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000058355	RNA_pol_L_2	PF13656.6	2.2e-27	1	1
ENSMUSP00000058355	RNA_pol_L	PF01193.24	2.3e-12	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000050970	-	1196	-	ENSMUSP00000058355	133 (aa)	-	P97304
ENSMUST00000200993	-	1167	-	ENSMUSP00000144185	33 (aa)	-	A0A0J9YUH6
ENSMUST00000201007	-	363	-	-	- (aa)	-	-
ENSMUST00000110557	-	1137	-	ENSMUSP00000106186	126 (aa)	-	Q9D1M1
ENSMUST00000202444	-	1350	-	ENSMUSP00000144455	42 (aa)	-	A0A0J9YV27
ENSMUST00000196288	-	878	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000029642's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03020	RNA polymerase	KEGG
mmu04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029642's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000029642	Polr1d	77	33.010	ENSMUSG00000039771	Polr2j	85	33.010

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029642	Polr1d	100	90.226	ENSG00000186184	POLR1D	100	90.226	Homo_sapiens
ENSMUSG00000029642	Polr1d	76	68.317	ENSAPOG00000021882	polr1d	94	69.000	Acanthochromis_polyacanthus
ENSMUSG00000029642	Polr1d	94	90.400	ENSAMEG00000019095	POLR1D	100	90.400	Ailuropoda_melanoleuca
ENSMUSG00000029642	Polr1d	75	72.000	ENSACIG00000013328	polr1d	87	72.000	Amphilophus_citrinellus
ENSMUSG00000029642	Polr1d	84	66.071	ENSAOCG00000018500	polr1d	98	66.071	Amphiprion_ocellaris
ENSMUSG00000029642	Polr1d	84	65.179	ENSAPEG00000009489	polr1d	98	65.179	Amphiprion_percula
ENSMUSG00000029642	Polr1d	84	62.500	ENSATEG00000019322	polr1d	98	62.500	Anabas_testudineus
ENSMUSG00000029642	Polr1d	83	63.964	ENSACAG00000015753	POLR1D	96	63.964	Anolis_carolinensis
ENSMUSG00000029642	Polr1d	100	90.226	ENSANAG00000024486	POLR1D	100	90.226	Aotus_nancymaae
ENSMUSG00000029642	Polr1d	84	66.071	ENSACLG00000023805	polr1d	98	66.071	Astatotilapia_calliptera
ENSMUSG00000029642	Polr1d	82	66.972	ENSAMXG00000036118	polr1d	95	66.972	Astyanax_mexicanus
ENSMUSG00000029642	Polr1d	100	87.218	ENSBTAG00000008642	POLR1D	100	87.218	Bos_taurus
ENSMUSG00000029642	Polr1d	100	87.218	ENSBTAG00000033252	-	100	87.218	Bos_taurus
ENSMUSG00000029642	Polr1d	62	39.024	WBGene00010230	rpac-19	57	39.024	Caenorhabditis_elegans
ENSMUSG00000029642	Polr1d	100	90.226	ENSCJAG00000044669	POLR1D	100	90.226	Callithrix_jacchus
ENSMUSG00000029642	Polr1d	100	90.226	ENSCAFG00000006755	POLR1D	100	90.226	Canis_familiaris
ENSMUSG00000029642	Polr1d	100	87.970	ENSCHIG00000021910	POLR1D	100	87.970	Capra_hircus
ENSMUSG00000029642	Polr1d	93	86.290	ENSTSYG00000026817	-	93	86.290	Carlito_syrichta
ENSMUSG00000029642	Polr1d	99	73.881	ENSTSYG00000034852	-	99	73.881	Carlito_syrichta
ENSMUSG00000029642	Polr1d	97	51.938	ENSCAPG00000006058	-	100	51.938	Cavia_aperea
ENSMUSG00000029642	Polr1d	97	52.713	ENSCPOG00000030450	-	100	52.713	Cavia_porcellus
ENSMUSG00000029642	Polr1d	100	88.722	ENSCCAG00000021349	-	100	88.722	Cebus_capucinus
ENSMUSG00000029642	Polr1d	100	73.684	ENSCCAG00000020191	-	100	73.684	Cebus_capucinus
ENSMUSG00000029642	Polr1d	100	78.195	ENSCATG00000022900	-	100	78.195	Cercocebus_atys
ENSMUSG00000029642	Polr1d	100	88.722	ENSCATG00000030710	-	100	88.722	Cercocebus_atys
ENSMUSG00000029642	Polr1d	93	89.516	ENSCLAG00000017623	POLR1D	100	89.516	Chinchilla_lanigera
ENSMUSG00000029642	Polr1d	73	74.227	ENSCPBG00000004719	POLR1D	96	74.227	Chrysemys_picta_bellii
ENSMUSG00000029642	Polr1d	100	88.722	ENSCANG00000028632	-	100	88.722	Colobus_angolensis_palliatus
ENSMUSG00000029642	Polr1d	100	85.714	ENSCANG00000037694	-	100	85.714	Colobus_angolensis_palliatus
ENSMUSG00000029642	Polr1d	100	91.729	ENSCGRG00001021251	Polr1d	100	91.729	Cricetulus_griseus_chok1gshd
ENSMUSG00000029642	Polr1d	100	91.729	ENSCGRG00000011639	Polr1d	100	91.729	Cricetulus_griseus_crigri
ENSMUSG00000029642	Polr1d	85	62.832	ENSCSEG00000018268	polr1d	97	62.832	Cynoglossus_semilaevis
ENSMUSG00000029642	Polr1d	78	70.192	ENSCVAG00000018527	polr1d	91	70.192	Cyprinodon_variegatus
ENSMUSG00000029642	Polr1d	83	63.636	ENSDARG00000037570	polr1d	98	63.636	Danio_rerio
ENSMUSG00000029642	Polr1d	100	85.821	ENSDNOG00000046247	-	100	85.821	Dasypus_novemcinctus
ENSMUSG00000029642	Polr1d	100	87.970	ENSDNOG00000043676	-	100	87.970	Dasypus_novemcinctus
ENSMUSG00000029642	Polr1d	100	90.977	ENSDORG00000029155	Polr1d	100	90.977	Dipodomys_ordii
ENSMUSG00000029642	Polr1d	65	45.349	FBgn0086447	l(2)37Cg	80	45.882	Drosophila_melanogaster
ENSMUSG00000029642	Polr1d	93	83.871	ENSETEG00000012797	POLR1D	100	83.871	Echinops_telfairi
ENSMUSG00000029642	Polr1d	65	68.966	ENSEBUG00000011748	polr1d	61	68.966	Eptatretus_burgeri
ENSMUSG00000029642	Polr1d	97	89.922	ENSEASG00005022487	POLR1D	100	89.922	Equus_asinus_asinus
ENSMUSG00000029642	Polr1d	93	89.516	ENSEEUG00000013144	POLR1D	100	89.516	Erinaceus_europaeus
ENSMUSG00000029642	Polr1d	80	65.094	ENSELUG00000005105	rpac2	93	65.094	Esox_lucius
ENSMUSG00000029642	Polr1d	100	90.226	ENSFCAG00000030162	POLR1D	100	90.226	Felis_catus
ENSMUSG00000029642	Polr1d	72	75.000	ENSFALG00000011463	POLR1D	95	75.000	Ficedula_albicollis
ENSMUSG00000029642	Polr1d	100	89.474	ENSFDAG00000004463	POLR1D	100	89.474	Fukomys_damarensis
ENSMUSG00000029642	Polr1d	80	72.897	ENSFHEG00000015410	polr1d	93	72.897	Fundulus_heteroclitus
ENSMUSG00000029642	Polr1d	54	63.889	ENSGALG00000007470	POLR1D	71	63.889	Gallus_gallus
ENSMUSG00000029642	Polr1d	78	71.154	ENSGAFG00000001693	polr1d	91	71.154	Gambusia_affinis
ENSMUSG00000029642	Polr1d	83	68.750	ENSGACG00000018585	polr1d	95	68.750	Gasterosteus_aculeatus
ENSMUSG00000029642	Polr1d	82	73.394	ENSGAGG00000008503	POLR1D	96	73.394	Gopherus_agassizii
ENSMUSG00000029642	Polr1d	100	90.226	ENSGGOG00000004235	POLR1D	100	90.226	Gorilla_gorilla
ENSMUSG00000029642	Polr1d	84	66.071	ENSHBUG00000002111	polr1d	98	66.071	Haplochromis_burtoni
ENSMUSG00000029642	Polr1d	100	89.474	ENSHGLG00000003202	POLR1D	100	89.474	Heterocephalus_glaber_female
ENSMUSG00000029642	Polr1d	100	89.474	ENSHGLG00100009393	POLR1D	100	89.474	Heterocephalus_glaber_male
ENSMUSG00000029642	Polr1d	80	67.290	ENSHCOG00000003258	polr1d	94	67.290	Hippocampus_comes
ENSMUSG00000029642	Polr1d	82	69.725	ENSIPUG00000014810	polr1d	95	69.725	Ictalurus_punctatus
ENSMUSG00000029642	Polr1d	100	90.977	ENSSTOG00000013877	POLR1D	100	90.977	Ictidomys_tridecemlineatus
ENSMUSG00000029642	Polr1d	97	86.466	ENSJJAG00000022671	-	100	89.167	Jaculus_jaculus
ENSMUSG00000029642	Polr1d	95	70.635	ENSJJAG00000021667	-	75	70.635	Jaculus_jaculus
ENSMUSG00000029642	Polr1d	83	63.964	ENSKMAG00000015256	polr1d	97	63.964	Kryptolebias_marmoratus
ENSMUSG00000029642	Polr1d	78	69.231	ENSLBEG00000015919	polr1d	91	69.231	Labrus_bergylta
ENSMUSG00000029642	Polr1d	87	63.793	ENSLACG00000006810	POLR1D	96	63.793	Latimeria_chalumnae
ENSMUSG00000029642	Polr1d	54	75.676	ENSLOCG00000014976	polr1d	100	75.676	Lepisosteus_oculatus
ENSMUSG00000029642	Polr1d	100	84.962	ENSLAFG00000032290	POLR1D	100	84.962	Loxodonta_africana
ENSMUSG00000029642	Polr1d	94	88.800	ENSMFAG00000045264	POLR1D	97	88.800	Macaca_fascicularis
ENSMUSG00000029642	Polr1d	100	69.925	ENSMMUG00000041570	-	100	69.925	Macaca_mulatta
ENSMUSG00000029642	Polr1d	87	88.793	ENSMMUG00000020386	POLR1D	100	88.793	Macaca_mulatta
ENSMUSG00000029642	Polr1d	100	89.474	ENSMNEG00000008630	-	100	89.474	Macaca_nemestrina
ENSMUSG00000029642	Polr1d	100	73.684	ENSMNEG00000038120	-	100	73.684	Macaca_nemestrina
ENSMUSG00000029642	Polr1d	100	78.947	ENSMLEG00000032251	-	100	78.947	Mandrillus_leucophaeus
ENSMUSG00000029642	Polr1d	100	89.474	ENSMLEG00000041048	-	100	89.474	Mandrillus_leucophaeus
ENSMUSG00000029642	Polr1d	76	68.317	ENSMAMG00000014834	polr1d	94	68.317	Mastacembelus_armatus
ENSMUSG00000029642	Polr1d	77	71.569	ENSMZEG00005006638	polr1d	90	71.569	Maylandia_zebra
ENSMUSG00000029642	Polr1d	69	75.000	ENSMGAG00000005322	POLR1D	84	75.000	Meleagris_gallopavo
ENSMUSG00000029642	Polr1d	100	91.729	ENSMAUG00000001946	Polr1d	100	91.729	Mesocricetus_auratus
ENSMUSG00000029642	Polr1d	99	76.515	ENSMICG00000007349	-	100	76.515	Microcebus_murinus
ENSMUSG00000029642	Polr1d	100	89.474	ENSMICG00000016883	-	100	89.474	Microcebus_murinus
ENSMUSG00000029642	Polr1d	99	91.667	ENSMOCG00000021288	Polr1d	99	91.667	Microtus_ochrogaster
ENSMUSG00000029642	Polr1d	80	67.290	ENSMMOG00000009605	polr1d	94	67.290	Mola_mola
ENSMUSG00000029642	Polr1d	83	77.477	ENSMODG00000023881	POLR1D	97	77.477	Monodelphis_domestica
ENSMUSG00000029642	Polr1d	80	64.486	ENSMALG00000010652	polr1d	94	64.486	Monopterus_albus
ENSMUSG00000029642	Polr1d	100	99.248	MGP_CAROLIEiJ_G0028034	Polr1d	100	99.248	Mus_caroli
ENSMUSG00000029642	Polr1d	100	99.248	MGP_PahariEiJ_G0024600	Polr1d	100	99.248	Mus_pahari
ENSMUSG00000029642	Polr1d	100	99.248	MGP_SPRETEiJ_G0029032	Polr1d	100	99.248	Mus_spretus
ENSMUSG00000029642	Polr1d	99	78.788	ENSMLUG00000004118	-	99	78.788	Myotis_lucifugus
ENSMUSG00000029642	Polr1d	100	87.970	ENSMLUG00000027169	-	100	87.970	Myotis_lucifugus
ENSMUSG00000029642	Polr1d	87	89.655	ENSNGAG00000006014	Polr1d	100	89.655	Nannospalax_galili
ENSMUSG00000029642	Polr1d	84	66.071	ENSNBRG00000020327	polr1d	98	66.071	Neolamprologus_brichardi
ENSMUSG00000029642	Polr1d	100	90.226	ENSNLEG00000000358	POLR1D	100	90.226	Nomascus_leucogenys
ENSMUSG00000029642	Polr1d	100	75.188	ENSODEG00000014801	-	100	75.188	Octodon_degus
ENSMUSG00000029642	Polr1d	100	88.722	ENSODEG00000005294	-	100	88.722	Octodon_degus
ENSMUSG00000029642	Polr1d	77	80.583	ENSOANG00000008708	-	95	80.583	Ornithorhynchus_anatinus
ENSMUSG00000029642	Polr1d	100	90.226	ENSOCUG00000015706	POLR1D	82	90.226	Oryctolagus_cuniculus
ENSMUSG00000029642	Polr1d	80	67.290	ENSORLG00000010257	polr1d	94	67.290	Oryzias_latipes
ENSMUSG00000029642	Polr1d	83	65.766	ENSORLG00020000533	polr1d	75	65.766	Oryzias_latipes_hni
ENSMUSG00000029642	Polr1d	86	65.789	ENSORLG00015013267	polr1d	75	65.789	Oryzias_latipes_hsok
ENSMUSG00000029642	Polr1d	91	63.636	ENSOMEG00000014912	polr1d	81	63.636	Oryzias_melastigma
ENSMUSG00000029642	Polr1d	100	90.977	ENSOGAG00000014601	POLR1D	100	90.977	Otolemur_garnettii
ENSMUSG00000029642	Polr1d	94	88.000	ENSOARG00000017005	POLR1D	96	88.000	Ovis_aries
ENSMUSG00000029642	Polr1d	100	89.474	ENSPPAG00000028138	POLR1D	100	89.474	Pan_paniscus
ENSMUSG00000029642	Polr1d	99	90.152	ENSPPRG00000003381	POLR1D	99	90.152	Panthera_pardus
ENSMUSG00000029642	Polr1d	93	90.323	ENSPTIG00000018137	POLR1D	93	90.323	Panthera_tigris_altaica
ENSMUSG00000029642	Polr1d	100	90.226	ENSPTRG00000005734	POLR1D	100	90.226	Pan_troglodytes
ENSMUSG00000029642	Polr1d	100	89.474	ENSPANG00000020259	-	100	89.474	Papio_anubis
ENSMUSG00000029642	Polr1d	100	78.947	ENSPANG00000035051	-	100	78.947	Papio_anubis
ENSMUSG00000029642	Polr1d	80	65.421	ENSPKIG00000021891	polr1d	91	51.304	Paramormyrops_kingsleyae
ENSMUSG00000029642	Polr1d	87	71.795	ENSPSIG00000011822	POLR1D	91	71.795	Pelodiscus_sinensis
ENSMUSG00000029642	Polr1d	84	64.286	ENSPMGG00000010359	polr1d	97	64.286	Periophthalmus_magnuspinnatus
ENSMUSG00000029642	Polr1d	93	55.200	ENSPMGG00000012998	POLR1D	93	55.200	Periophthalmus_magnuspinnatus
ENSMUSG00000029642	Polr1d	100	87.970	ENSPEMG00000006336	-	100	87.970	Peromyscus_maniculatus_bairdii
ENSMUSG00000029642	Polr1d	81	56.481	ENSPMAG00000004228	polr1d	91	56.481	Petromyzon_marinus
ENSMUSG00000029642	Polr1d	83	77.477	ENSPCIG00000001673	POLR1D	97	77.477	Phascolarctos_cinereus
ENSMUSG00000029642	Polr1d	78	71.154	ENSPFOG00000023343	polr1d	91	72.152	Poecilia_formosa
ENSMUSG00000029642	Polr1d	78	71.154	ENSPLAG00000009675	polr1d	91	71.154	Poecilia_latipinna
ENSMUSG00000029642	Polr1d	78	71.154	ENSPMEG00000004628	polr1d	91	71.154	Poecilia_mexicana
ENSMUSG00000029642	Polr1d	78	71.154	ENSPREG00000022032	polr1d	91	71.154	Poecilia_reticulata
ENSMUSG00000029642	Polr1d	100	90.226	ENSPCOG00000028175	POLR1D	100	90.226	Propithecus_coquereli
ENSMUSG00000029642	Polr1d	84	66.071	ENSPNYG00000000107	polr1d	98	66.071	Pundamilia_nyererei
ENSMUSG00000029642	Polr1d	82	64.220	ENSPNAG00000001512	polr1d	94	63.393	Pygocentrus_nattereri
ENSMUSG00000029642	Polr1d	100	89.474	ENSRBIG00000036378	-	100	89.474	Rhinopithecus_bieti
ENSMUSG00000029642	Polr1d	100	86.466	ENSRBIG00000000336	-	100	86.466	Rhinopithecus_bieti
ENSMUSG00000029642	Polr1d	100	89.474	ENSRROG00000042232	-	100	89.474	Rhinopithecus_roxellana
ENSMUSG00000029642	Polr1d	100	85.714	ENSRROG00000026751	-	100	85.714	Rhinopithecus_roxellana
ENSMUSG00000029642	Polr1d	89	44.538	YNL113W	RPC19	84	44.538	Saccharomyces_cerevisiae
ENSMUSG00000029642	Polr1d	86	86.842	ENSSBOG00000030146	-	84	86.842	Saimiri_boliviensis_boliviensis
ENSMUSG00000029642	Polr1d	100	90.226	ENSSBOG00000028482	-	100	90.226	Saimiri_boliviensis_boliviensis
ENSMUSG00000029642	Polr1d	86	74.561	ENSSHAG00000001190	POLR1D	88	74.561	Sarcophilus_harrisii
ENSMUSG00000029642	Polr1d	82	70.642	ENSSFOG00015011375	polr1d	96	70.642	Scleropages_formosus
ENSMUSG00000029642	Polr1d	84	64.286	ENSSMAG00000011861	polr1d	98	64.286	Scophthalmus_maximus
ENSMUSG00000029642	Polr1d	84	62.500	ENSSDUG00000011930	polr1d	98	62.500	Seriola_dumerili
ENSMUSG00000029642	Polr1d	86	60.870	ENSSLDG00000023871	polr1d	97	60.870	Seriola_lalandi_dorsalis
ENSMUSG00000029642	Polr1d	100	90.226	ENSSARG00000007840	POLR1D	100	90.226	Sorex_araneus
ENSMUSG00000029642	Polr1d	79	72.381	ENSSPUG00000005786	POLR1D	95	69.369	Sphenodon_punctatus
ENSMUSG00000029642	Polr1d	78	70.192	ENSSPAG00000011764	polr1d	91	70.192	Stegastes_partitus
ENSMUSG00000029642	Polr1d	100	88.722	ENSSSCG00000009310	POLR1D	100	88.722	Sus_scrofa
ENSMUSG00000029642	Polr1d	72	75.000	ENSTGUG00000005450	POLR1D	100	75.000	Taeniopygia_guttata
ENSMUSG00000029642	Polr1d	77	65.049	ENSTRUG00000019741	polr1d	90	65.049	Takifugu_rubripes
ENSMUSG00000029642	Polr1d	93	90.323	ENSTBEG00000007006	POLR1D	100	90.323	Tupaia_belangeri
ENSMUSG00000029642	Polr1d	100	90.226	ENSUAMG00000011413	POLR1D	100	90.226	Ursus_americanus
ENSMUSG00000029642	Polr1d	93	90.323	ENSUMAG00000016968	POLR1D	97	90.323	Ursus_maritimus
ENSMUSG00000029642	Polr1d	100	90.226	ENSVVUG00000009216	POLR1D	100	90.226	Vulpes_vulpes
ENSMUSG00000029642	Polr1d	74	73.469	ENSXCOG00000011731	polr1d	75	73.469	Xiphophorus_couchianus
ENSMUSG00000029642	Polr1d	74	73.469	ENSXMAG00000017538	polr1d	75	73.469	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001054	RNA polymerase I activity	21873635.	IBA	Function
GO:0001056	RNA polymerase III activity	21873635.	IBA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	21873635.	IBA	Function
GO:0005515	protein binding	15226435.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005666	RNA polymerase III complex	21873635.	IBA	Component
GO:0005736	RNA polymerase I complex	21873635.	IBA	Component
GO:0005736	RNA polymerase I complex	15226435.	IDA	Component
GO:0006351	transcription, DNA-templated	-	IEA	Process
GO:0046983	protein dimerization activity	-	IEA	Function