EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000029701 (Gene tree)
Gene ID: 68272
Gene Symbol: Rbm28
Alias: 2810480G15Rik
Full Name: RNA binding motif protein 28
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 41431 bases
Position: chr6:29123576-29165006
Accession: 2655711
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000007993	RRM_1	PF00076.22	6.6e-55	1	4
ENSMUSP00000007993	RRM_1	PF00076.22	6.6e-55	2	4
ENSMUSP00000007993	RRM_1	PF00076.22	6.6e-55	3	4
ENSMUSP00000007993	RRM_1	PF00076.22	6.6e-55	4	4

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000164563	-	637	-	ENSMUSP00000127856	133 (aa)	-	F6SB18
ENSMUST00000169214	-	1923	-	-	- (aa)	-	-
ENSMUST00000007993	-	4465	-	ENSMUSP00000007993	750 (aa)	-	Q8CGC6
ENSMUST00000170473	-	844	-	-	- (aa)	-	-
ENSMUST00000172346	-	495	-	-	- (aa)	-	-
ENSMUST00000170750	-	954	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000029701's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029701's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029701	Rbm28	100	80.577	ENSG00000106344	RBM28	100	97.500	Homo_sapiens
ENSMUSG00000029701	Rbm28	58	55.134	ENSAPOG00000015512	rbm28	100	52.455	Acanthochromis_polyacanthus
ENSMUSG00000029701	Rbm28	100	83.654	ENSAMEG00000004776	RBM28	92	90.625	Ailuropoda_melanoleuca
ENSMUSG00000029701	Rbm28	56	56.635	ENSACIG00000023153	rbm28	99	52.263	Amphilophus_citrinellus
ENSMUSG00000029701	Rbm28	58	55.936	ENSAOCG00000000462	rbm28	100	52.021	Amphiprion_ocellaris
ENSMUSG00000029701	Rbm28	58	55.708	ENSAPEG00000012996	rbm28	100	51.804	Amphiprion_percula
ENSMUSG00000029701	Rbm28	58	51.483	ENSATEG00000001672	rbm28	100	48.987	Anabas_testudineus
ENSMUSG00000029701	Rbm28	100	81.481	ENSANAG00000033922	RBM28	100	81.349	Aotus_nancymaae
ENSMUSG00000029701	Rbm28	100	50.317	ENSACLG00000025024	rbm28	100	50.891	Astatotilapia_calliptera
ENSMUSG00000029701	Rbm28	58	58.219	ENSAMXG00000000763	rbm28	99	59.453	Astyanax_mexicanus
ENSMUSG00000029701	Rbm28	100	79.255	ENSBTAG00000017001	RBM28	100	97.500	Bos_taurus
ENSMUSG00000029701	Rbm28	100	79.423	ENSCJAG00000017731	RBM28	100	79.554	Callithrix_jacchus
ENSMUSG00000029701	Rbm28	100	80.345	ENSCAFG00000001667	RBM28	100	80.611	Canis_familiaris
ENSMUSG00000029701	Rbm28	100	80.345	ENSCAFG00020021648	RBM28	100	80.611	Canis_lupus_dingo
ENSMUSG00000029701	Rbm28	100	78.912	ENSCHIG00000014146	RBM28	100	79.045	Capra_hircus
ENSMUSG00000029701	Rbm28	100	79.974	ENSTSYG00000002892	RBM28	100	92.500	Carlito_syrichta
ENSMUSG00000029701	Rbm28	83	61.821	ENSCAPG00000013218	RBM28	100	62.300	Cavia_aperea
ENSMUSG00000029701	Rbm28	100	81.291	ENSCPOG00000006253	RBM28	100	81.291	Cavia_porcellus
ENSMUSG00000029701	Rbm28	100	78.544	ENSCCAG00000035105	RBM28	100	80.395	Cebus_capucinus
ENSMUSG00000029701	Rbm28	100	79.948	ENSCATG00000040497	RBM28	100	95.000	Cercocebus_atys
ENSMUSG00000029701	Rbm28	100	78.220	ENSCLAG00000003707	RBM28	100	78.486	Chinchilla_lanigera
ENSMUSG00000029701	Rbm28	100	80.526	ENSCSAG00000010161	RBM28	100	80.658	Chlorocebus_sabaeus
ENSMUSG00000029701	Rbm28	57	87.097	ENSCHOG00000001994	-	63	87.097	Choloepus_hoffmanni
ENSMUSG00000029701	Rbm28	51	61.187	ENSCPBG00000018088	RBM28	87	59.227	Chrysemys_picta_bellii
ENSMUSG00000029701	Rbm28	53	55.670	ENSCSAVG00000007149	-	95	43.824	Ciona_savignyi
ENSMUSG00000029701	Rbm28	90	80.228	ENSCANG00000038397	RBM28	100	97.500	Colobus_angolensis_palliatus
ENSMUSG00000029701	Rbm28	67	88.911	ENSCGRG00001021278	Rbm28	100	84.271	Cricetulus_griseus_chok1gshd
ENSMUSG00000029701	Rbm28	100	85.976	ENSCGRG00000005098	Rbm28	100	86.107	Cricetulus_griseus_crigri
ENSMUSG00000029701	Rbm28	100	50.771	ENSCSEG00000004212	rbm28	100	50.706	Cynoglossus_semilaevis
ENSMUSG00000029701	Rbm28	58	54.767	ENSCVAG00000010493	rbm28	99	49.936	Cyprinodon_variegatus
ENSMUSG00000029701	Rbm28	88	56.889	ENSDARG00000025332	rbm28	100	47.403	Danio_rerio
ENSMUSG00000029701	Rbm28	100	77.997	ENSDNOG00000001124	RBM28	100	78.261	Dasypus_novemcinctus
ENSMUSG00000029701	Rbm28	66	82.294	ENSDORG00000004184	Rbm28	97	82.495	Dipodomys_ordii
ENSMUSG00000029701	Rbm28	66	39.919	FBgn0260456	CG4806	92	35.250	Drosophila_melanogaster
ENSMUSG00000029701	Rbm28	100	70.993	ENSETEG00000007130	RBM28	99	70.993	Echinops_telfairi
ENSMUSG00000029701	Rbm28	99	40.318	ENSEBUG00000004419	rbm28	98	41.555	Eptatretus_burgeri
ENSMUSG00000029701	Rbm28	100	80.104	ENSEASG00005008528	RBM28	100	79.714	Equus_asinus_asinus
ENSMUSG00000029701	Rbm28	100	80.000	ENSECAG00000007745	RBM28	100	79.610	Equus_caballus
ENSMUSG00000029701	Rbm28	100	72.597	ENSEEUG00000002389	RBM28	100	72.597	Erinaceus_europaeus
ENSMUSG00000029701	Rbm28	100	51.658	ENSELUG00000020602	rbm28	100	52.351	Esox_lucius
ENSMUSG00000029701	Rbm28	100	80.718	ENSFCAG00000000946	RBM28	100	97.500	Felis_catus
ENSMUSG00000029701	Rbm28	100	82.314	ENSFDAG00000010169	RBM28	100	81.649	Fukomys_damarensis
ENSMUSG00000029701	Rbm28	58	53.075	ENSGMOG00000007091	rbm28	99	48.021	Gadus_morhua
ENSMUSG00000029701	Rbm28	59	56.027	ENSGAFG00000004802	rbm28	98	56.473	Gambusia_affinis
ENSMUSG00000029701	Rbm28	58	55.069	ENSGACG00000012612	rbm28	100	50.000	Gasterosteus_aculeatus
ENSMUSG00000029701	Rbm28	100	52.653	ENSGAGG00000008873	RBM28	85	78.571	Gopherus_agassizii
ENSMUSG00000029701	Rbm28	95	79.086	ENSGGOG00000004644	RBM28	97	79.363	Gorilla_gorilla
ENSMUSG00000029701	Rbm28	90	51.404	ENSHBUG00000009611	rbm28	98	51.385	Haplochromis_burtoni
ENSMUSG00000029701	Rbm28	100	81.758	ENSHGLG00000005409	RBM28	100	81.758	Heterocephalus_glaber_female
ENSMUSG00000029701	Rbm28	100	81.758	ENSHGLG00100016458	RBM28	100	81.758	Heterocephalus_glaber_male
ENSMUSG00000029701	Rbm28	63	45.895	ENSIPUG00000007103	rbm28	94	46.138	Ictalurus_punctatus
ENSMUSG00000029701	Rbm28	100	81.877	ENSSTOG00000002169	RBM28	100	81.877	Ictidomys_tridecemlineatus
ENSMUSG00000029701	Rbm28	100	75.098	ENSJJAG00000022400	Rbm28	100	74.668	Jaculus_jaculus
ENSMUSG00000029701	Rbm28	59	54.000	ENSKMAG00000013348	rbm28	99	49.935	Kryptolebias_marmoratus
ENSMUSG00000029701	Rbm28	58	56.208	ENSLBEG00000012998	rbm28	100	50.446	Labrus_bergylta
ENSMUSG00000029701	Rbm28	74	56.239	ENSLACG00000010485	-	100	55.672	Latimeria_chalumnae
ENSMUSG00000029701	Rbm28	100	63.590	ENSLOCG00000015541	rbm28	81	62.887	Lepisosteus_oculatus
ENSMUSG00000029701	Rbm28	100	79.260	ENSLAFG00000010717	RBM28	100	78.524	Loxodonta_africana
ENSMUSG00000029701	Rbm28	100	80.079	ENSMFAG00000031036	RBM28	100	95.000	Macaca_fascicularis
ENSMUSG00000029701	Rbm28	100	80.105	ENSMMUG00000007250	RBM28	100	95.000	Macaca_mulatta
ENSMUSG00000029701	Rbm28	100	79.688	ENSMNEG00000036970	RBM28	100	95.000	Macaca_nemestrina
ENSMUSG00000029701	Rbm28	83	79.149	ENSMLEG00000037717	RBM28	100	78.936	Mandrillus_leucophaeus
ENSMUSG00000029701	Rbm28	100	52.062	ENSMAMG00000008525	rbm28	100	52.461	Mastacembelus_armatus
ENSMUSG00000029701	Rbm28	93	49.592	ENSMZEG00005019625	rbm28	100	50.275	Maylandia_zebra
ENSMUSG00000029701	Rbm28	100	82.519	ENSMAUG00000002263	Rbm28	100	82.134	Mesocricetus_auratus
ENSMUSG00000029701	Rbm28	93	76.902	ENSMICG00000000107	RBM28	100	77.178	Microcebus_murinus
ENSMUSG00000029701	Rbm28	100	87.500	ENSMOCG00000014615	Rbm28	100	87.500	Microtus_ochrogaster
ENSMUSG00000029701	Rbm28	58	53.211	ENSMMOG00000008600	rbm28	100	51.440	Mola_mola
ENSMUSG00000029701	Rbm28	100	68.791	ENSMODG00000015151	RBM28	100	70.926	Monodelphis_domestica
ENSMUSG00000029701	Rbm28	58	54.176	ENSMALG00000006419	rbm28	100	48.662	Monopterus_albus
ENSMUSG00000029701	Rbm28	100	97.207	MGP_CAROLIEiJ_G0028162	Rbm28	100	97.207	Mus_caroli
ENSMUSG00000029701	Rbm28	100	96.282	MGP_PahariEiJ_G0021920	Rbm28	100	96.282	Mus_pahari
ENSMUSG00000029701	Rbm28	100	99.200	MGP_SPRETEiJ_G0029162	Rbm28	100	99.200	Mus_spretus
ENSMUSG00000029701	Rbm28	100	79.605	ENSMPUG00000006511	RBM28	100	79.605	Mustela_putorius_furo
ENSMUSG00000029701	Rbm28	100	79.058	ENSMLUG00000002186	RBM28	100	79.161	Myotis_lucifugus
ENSMUSG00000029701	Rbm28	100	79.416	ENSNGAG00000017946	-	100	79.416	Nannospalax_galili
ENSMUSG00000029701	Rbm28	100	81.830	ENSNGAG00000006480	-	100	81.963	Nannospalax_galili
ENSMUSG00000029701	Rbm28	100	79.765	ENSNLEG00000012307	RBM28	100	97.500	Nomascus_leucogenys
ENSMUSG00000029701	Rbm28	81	80.247	ENSMEUG00000009611	RBM28	91	80.247	Notamacropus_eugenii
ENSMUSG00000029701	Rbm28	90	72.553	ENSOPRG00000015140	RBM28	90	74.181	Ochotona_princeps
ENSMUSG00000029701	Rbm28	81	82.160	ENSODEG00000013217	-	87	82.160	Octodon_degus
ENSMUSG00000029701	Rbm28	100	77.586	ENSODEG00000003213	-	100	77.719	Octodon_degus
ENSMUSG00000029701	Rbm28	58	55.631	ENSONIG00000014924	rbm28	100	50.581	Oreochromis_niloticus
ENSMUSG00000029701	Rbm28	100	64.258	ENSOANG00000000815	-	100	65.007	Ornithorhynchus_anatinus
ENSMUSG00000029701	Rbm28	100	77.865	ENSOCUG00000003009	RBM28	100	78.125	Oryctolagus_cuniculus
ENSMUSG00000029701	Rbm28	99	50.699	ENSORLG00000009636	rbm28	99	51.900	Oryzias_latipes
ENSMUSG00000029701	Rbm28	58	55.079	ENSORLG00020002123	rbm28	99	51.515	Oryzias_latipes_hni
ENSMUSG00000029701	Rbm28	89	60.766	ENSORLG00015015030	rbm28	99	59.420	Oryzias_latipes_hsok
ENSMUSG00000029701	Rbm28	58	57.556	ENSOMEG00000007801	rbm28	100	51.975	Oryzias_melastigma
ENSMUSG00000029701	Rbm28	94	90.000	ENSOGAG00000006011	RBM28	100	90.000	Otolemur_garnettii
ENSMUSG00000029701	Rbm28	100	78.780	ENSOARG00000002547	RBM28	100	78.647	Ovis_aries
ENSMUSG00000029701	Rbm28	100	80.105	ENSPPAG00000041730	RBM28	100	97.500	Pan_paniscus
ENSMUSG00000029701	Rbm28	100	79.654	ENSPPRG00000004420	RBM28	100	97.500	Panthera_pardus
ENSMUSG00000029701	Rbm28	100	80.319	ENSPTIG00000008550	RBM28	100	97.500	Panthera_tigris_altaica
ENSMUSG00000029701	Rbm28	100	80.366	ENSPTRG00000019659	RBM28	100	97.500	Pan_troglodytes
ENSMUSG00000029701	Rbm28	100	80.105	ENSPANG00000022295	RBM28	100	95.000	Papio_anubis
ENSMUSG00000029701	Rbm28	99	51.750	ENSPKIG00000023453	rbm28	99	51.677	Paramormyrops_kingsleyae
ENSMUSG00000029701	Rbm28	88	54.009	ENSPMGG00000012840	rbm28	100	49.867	Periophthalmus_magnuspinnatus
ENSMUSG00000029701	Rbm28	100	84.861	ENSPEMG00000020673	Rbm28	100	84.933	Peromyscus_maniculatus_bairdii
ENSMUSG00000029701	Rbm28	100	69.577	ENSPCIG00000012810	RBM28	100	71.146	Phascolarctos_cinereus
ENSMUSG00000029701	Rbm28	59	56.920	ENSPFOG00000018209	rbm28	100	49.362	Poecilia_formosa
ENSMUSG00000029701	Rbm28	58	56.081	ENSPLAG00000016078	rbm28	96	50.260	Poecilia_latipinna
ENSMUSG00000029701	Rbm28	59	56.793	ENSPMEG00000004292	rbm28	100	49.299	Poecilia_mexicana
ENSMUSG00000029701	Rbm28	57	55.581	ENSPREG00000014287	rbm28	98	50.398	Poecilia_reticulata
ENSMUSG00000029701	Rbm28	100	80.789	ENSPPYG00000017975	RBM28	100	80.921	Pongo_abelii
ENSMUSG00000029701	Rbm28	74	74.366	ENSPCAG00000008223	RBM28	83	74.444	Procavia_capensis
ENSMUSG00000029701	Rbm28	100	78.831	ENSPCOG00000016797	RBM28	100	97.500	Propithecus_coquereli
ENSMUSG00000029701	Rbm28	78	89.302	ENSPVAG00000005443	RBM28	77	89.302	Pteropus_vampyrus
ENSMUSG00000029701	Rbm28	100	50.190	ENSPNYG00000014003	rbm28	100	50.965	Pundamilia_nyererei
ENSMUSG00000029701	Rbm28	100	89.272	ENSRNOG00000005468	Rbm28	100	89.404	Rattus_norvegicus
ENSMUSG00000029701	Rbm28	100	80.261	ENSRBIG00000033990	RBM28	100	97.500	Rhinopithecus_bieti
ENSMUSG00000029701	Rbm28	100	79.974	ENSRROG00000040747	RBM28	100	97.500	Rhinopithecus_roxellana
ENSMUSG00000029701	Rbm28	91	74.151	ENSSBOG00000012308	RBM28	100	74.151	Saimiri_boliviensis_boliviensis
ENSMUSG00000029701	Rbm28	96	66.897	ENSSHAG00000017017	RBM28	99	66.025	Sarcophilus_harrisii
ENSMUSG00000029701	Rbm28	100	51.905	ENSSFOG00015001231	rbm28	100	53.080	Scleropages_formosus
ENSMUSG00000029701	Rbm28	58	53.288	ENSSMAG00000003885	rbm28	99	51.340	Scophthalmus_maximus
ENSMUSG00000029701	Rbm28	58	56.889	ENSSLDG00000020099	rbm28	100	51.028	Seriola_lalandi_dorsalis
ENSMUSG00000029701	Rbm28	77	84.051	ENSSARG00000008303	RBM28	80	84.051	Sorex_araneus
ENSMUSG00000029701	Rbm28	67	70.588	ENSSPUG00000000838	RBM28	79	70.588	Sphenodon_punctatus
ENSMUSG00000029701	Rbm28	58	53.863	ENSSPAG00000023305	rbm28	100	49.726	Stegastes_partitus
ENSMUSG00000029701	Rbm28	100	79.260	ENSSSCG00000031847	RBM28	100	79.288	Sus_scrofa
ENSMUSG00000029701	Rbm28	58	53.744	ENSTRUG00000013311	rbm28	99	49.559	Takifugu_rubripes
ENSMUSG00000029701	Rbm28	99	50.845	ENSTNIG00000017962	rbm28	99	50.456	Tetraodon_nigroviridis
ENSMUSG00000029701	Rbm28	85	85.714	ENSTBEG00000012749	RBM28	86	85.714	Tupaia_belangeri
ENSMUSG00000029701	Rbm28	100	76.540	ENSTTRG00000013647	RBM28	100	76.802	Tursiops_truncatus
ENSMUSG00000029701	Rbm28	100	74.079	ENSUAMG00000006949	RBM28	100	74.474	Ursus_americanus
ENSMUSG00000029701	Rbm28	100	80.317	ENSUMAG00000005997	RBM28	100	80.317	Ursus_maritimus
ENSMUSG00000029701	Rbm28	87	72.340	ENSVPAG00000008304	RBM28	87	72.340	Vicugna_pacos
ENSMUSG00000029701	Rbm28	100	80.080	ENSVVUG00000007270	RBM28	100	80.345	Vulpes_vulpes
ENSMUSG00000029701	Rbm28	99	54.835	ENSXETG00000009271	rbm28	99	54.892	Xenopus_tropicalis
ENSMUSG00000029701	Rbm28	59	54.195	ENSXCOG00000020357	rbm28	99	51.745	Xiphophorus_couchianus
ENSMUSG00000029701	Rbm28	59	55.457	ENSXMAG00000004415	rbm28	100	50.324	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008150	biological_process	-	ND	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component