EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000000505	-	2962	XM_006504555	ENSMUSP00000000505	719 (aa)	XP_017176189	Q61881
ENSMUST00000155902	-	736	-	ENSMUSP00000120243	110 (aa)	-	D3Z0J6
ENSMUST00000147920	-	660	-	ENSMUSP00000116169	6 (aa)	-	UPI00015AA312
ENSMUST00000139223	-	629	-	-	- (aa)	-	-
ENSMUST00000125316	-	986	-	-	- (aa)	-	-
ENSMUST00000148094	-	705	-	ENSMUSP00000121344	50 (aa)	-	D3Z335
ENSMUST00000148879	-	1351	-	ENSMUSP00000116131	389 (aa)	-	D3Z6N3
ENSMUST00000153867	-	795	-	ENSMUSP00000121566	142 (aa)	-	D3Z2K9
ENSMUST00000139983	-	829	-	ENSMUSP00000121446	110 (aa)	-	D3Z0J6
ENSMUST00000142254	-	1023	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu03030	DNA replication	KEGG
mmu04110	Cell cycle	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029730	Mcm7	69	34.312	WBGene00003157	mcm-5	71	34.312	Caenorhabditis_elegans
ENSMUSG00000029730	Mcm7	100	66.943	FBgn0020633	Mcm7	100	66.943	Drosophila_melanogaster
ENSMUSG00000029730	Mcm7	89	32.101	FBgn0017577	Mcm5	86	32.101	Drosophila_melanogaster
ENSMUSG00000029730	Mcm7	100	93.636	ENSG00000166508	MCM7	100	94.291	Homo_sapiens
ENSMUSG00000029730	Mcm7	85	30.579	ENSG00000076003	MCM6	65	34.944	Homo_sapiens
ENSMUSG00000029730	Mcm7	88	31.611	ENSG00000100297	MCM5	84	31.611	Homo_sapiens
ENSMUSG00000029730	Mcm7	70	37.367	ENSG00000112118	MCM3	71	37.005	Homo_sapiens
ENSMUSG00000029730	Mcm7	70	37.743	ENSMUSG00000041859	Mcm3	71	37.056	Mus_musculus
ENSMUSG00000029730	Mcm7	87	34.677	YGL201C		57	37.649	Saccharomyces_cerevisiae
ENSMUSG00000029730	Mcm7	71	34.220	YLR274W	MCM5	71	35.135	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003678	DNA helicase activity	15917436.	IDA	Function
GO:0003697	single-stranded DNA binding	15917436.	IPI	Function
GO:0004003	ATP-dependent DNA helicase activity	-	ISO	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005515	protein binding	15917436.16289477.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	12972605.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006260	DNA replication	-	IEA	Process
GO:0006268	DNA unwinding involved in DNA replication	15917436.	IPI	Process
GO:0006270	DNA replication initiation	-	IEA	Process
GO:0006974	cellular response to DNA damage stimulus	-	ISO	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0008283	cell proliferation	12972605.	IDA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0042325	regulation of phosphorylation	-	ISO	Process
GO:0042555	MCM complex	-	ISO	Component
GO:0071466	cellular response to xenobiotic stimulus	24726645.	IDA	Process