EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000029761 (Gene tree)
Gene ID: 109624
Gene Symbol: Cald1
Alias: 4833423D12Rik|C920027I18Rik
Full Name: caldesmon 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 176974
Position: chr6: 34598500-34775473
Accession: 88250
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000115026	-	4080	XM_006505352	ENSMUSP00000110678	536 (aa)	XP_006505415	E9QA16
ENSMUST00000115027	-	4777	XM_006505348	ENSMUSP00000110679	768 (aa)	XP_006505411	E9QA15
ENSMUST00000127055	-	667	-	-	- (aa)	-	-
ENSMUST00000132331	-	674	-	-	- (aa)	-	-
ENSMUST00000201024	-	1264	-	-	- (aa)	-	-
ENSMUST00000126181	-	413	-	ENSMUSP00000121911	137 (aa)	-	F6RGN9
ENSMUST00000031775	-	2142	XM_006505345	ENSMUSP00000031775	554 (aa)	XP_006505408	D3Z6I7
ENSMUST00000155714	-	1422	-	-	- (aa)	-	-
ENSMUST00000149009	-	4096	XM_017321315	ENSMUSP00000138368	534 (aa)	XP_017176804	S4R1T7
ENSMUST00000201956	-	3972	-	-	- (aa)	-	-
ENSMUST00000142716	-	821	-	ENSMUSP00000116247	274 (aa)	-	F6QLP8
ENSMUST00000142512	-	956	-	ENSMUSP00000122926	253 (aa)	-	E9Q9F3
ENSMUST00000079391	-	4127	-	ENSMUSP00000078362	534 (aa)	-	E9Q0M9
ENSMUST00000136907	-	1063	-	ENSMUSP00000121213	354 (aa)	-	F6T2Z7
ENSMUST00000123823	-	633	-	ENSMUSP00000117064	211 (aa)	-	F6ZAW1
ENSMUST00000146685	-	262	-	-	- (aa)	-	-
ENSMUST00000154182	-	743	-	-	- (aa)	-	-
ENSMUST00000115021	-	4041	XM_006505351	ENSMUSP00000110673	530 (aa)	XP_006505414	Q8VCQ8

Gene Model

Click here to download ENSMUSG00000029761's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04270	Vascular smooth muscle contraction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029761's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029761	Cald1	98	92.812	ENSG00000122786	CALD1	100	95.833	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003779	actin binding	-	ISO	Function
GO:0003779	actin binding	2909534.	TAS	Function
GO:0005884	actin filament	-	ISO	Component
GO:0006940	regulation of smooth muscle contraction	2909534.	TAS	Process
GO:0014069	postsynaptic density	-	ISO	Component
GO:0016020	membrane	2909534.	IDA	Component
GO:0030425	dendrite	-	ISO	Component
GO:0030478	actin cap	2909534.	IDA	Component
GO:0032092	positive regulation of protein binding	-	ISO	Process
GO:0043025	neuronal cell body	-	ISO	Component
GO:0043197	dendritic spine	-	ISO	Component
GO:0051017	actin filament bundle assembly	-	ISO	Process
GO:0071559	response to transforming growth factor beta	24036928.	IMP	Process