EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000154079	-	722	-	ENSMUSP00000115093	181 (aa)	-	D3YX97
ENSMUST00000149816	-	4903	-	-	- (aa)	-	-
ENSMUST00000115242	-	5152	XM_006505179	ENSMUSP00000110897	613 (aa)	XP_006505242	Q68FL4
ENSMUST00000176693	-	562	-	-	- (aa)	-	-
ENSMUST00000141304	-	576	-	-	- (aa)	-	-
ENSMUST00000128927	-	709	-	ENSMUSP00000135633	223 (aa)	-	H3BL31
ENSMUST00000176265	-	541	-	ENSMUSP00000135714	75 (aa)	-	H3BLA5
ENSMUST00000125911	-	2039	-	ENSMUSP00000135518	404 (aa)	-	H3BKT5
ENSMUST00000202115	-	2390	-	-	- (aa)	-	-
ENSMUST00000143707	-	4741	-	-	- (aa)	-	-
ENSMUST00000152581	-	339	-	ENSMUSP00000135386	51 (aa)	-	H3BKG8
ENSMUST00000201282	-	2146	-	-	- (aa)	-	-
ENSMUST00000136031	-	485	-	ENSMUSP00000135362	23 (aa)	-	H3BKE9
ENSMUST00000201020	-	2406	-	-	- (aa)	-	-
ENSMUST00000128837	-	504	-	-	- (aa)	-	-
ENSMUST00000150365	-	986	-	ENSMUSP00000134827	160 (aa)	-	E9PX77
ENSMUST00000134438	-	728	-	ENSMUSP00000118790	238 (aa)	-	D3YYM7
ENSMUST00000115238	-	5129	XM_006505181	ENSMUSP00000110893	508 (aa)	XP_006505244	Q68FL4
ENSMUST00000064872	-	2019	XM_006505182	ENSMUSP00000067638	508 (aa)	XP_006505245	F8WI65
ENSMUST00000135396	-	3615	-	-	- (aa)	-	-
ENSMUST00000102995	-	5155	XM_006505180	ENSMUSP00000100060	612 (aa)	XP_006505243	F8WGT1
ENSMUST00000138205	-	248	-	-	- (aa)	-	-
ENSMUST00000143091	-	636	-	ENSMUSP00000144873	115 (aa)	-	A0A0N4SUY4

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu00270	Cysteine and methionine metabolism	KEGG
mmu01100	Metabolic pathways	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029772	Ahcyl2	100	54.310	WBGene00019322	ahcy-1	98	51.972	Caenorhabditis_elegans
ENSMUSG00000029772	Ahcyl2	100	53.043	ENSG00000101444	AHCY	100	50.864	Homo_sapiens
ENSMUSG00000029772	Ahcyl2	100	54.701	YER043C		99	48.214	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004013	adenosylhomocysteinase activity	21873635.	IBA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005783	endoplasmic reticulum	-	IEA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	19220705.	IDA	Component
GO:0006730	one-carbon metabolic process	-	IEA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0033353	S-adenosylmethionine cycle	21873635.	IBA	Process
GO:0043005	neuron projection	19220705.	IDA	Component
GO:0043231	intracellular membrane-bounded organelle	19220705.	IDA	Component