EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000029826 (Gene tree)
Gene ID: 78781
Gene Symbol: Zc3hav1
Alias: 1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ZAP
Full Name: zinc finger CCCH type%2C antiviral 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 49318 bases
Position: chr6:38305286-38354603
Accession: 1926031
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000110550	PARP	PF00644.20	1.6e-19	1	1
ENSMUSP00000144312	PARP	PF00644.20	8.2e-07	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000114900	-	4944	XM_006506779	ENSMUSP00000110550	996 (aa)	XP_006506842	D3Z5I1
ENSMUST00000143702	-	3364	-	ENSMUSP00000144312	946 (aa)	-	Q3UPF5
ENSMUST00000114898	-	3052	-	ENSMUSP00000110548	673 (aa)	-	G3X9X5
ENSMUST00000031850	-	3400	-	ENSMUSP00000031850	789 (aa)	-	Q3UPF5

Gene Model

Click here to download ENSMUSG00000029826's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029826's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000029826	Zc3hav1	62	34.339	ENSMUSG00000038507	Parp12	92	34.339

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029826	Zc3hav1	99	57.025	ENSG00000105939	ZC3HAV1	100	56.846	Homo_sapiens
ENSMUSG00000029826	Zc3hav1	97	53.355	ENSAMEG00000017936	ZC3HAV1	100	53.132	Ailuropoda_melanoleuca
ENSMUSG00000029826	Zc3hav1	99	52.893	ENSANAG00000025650	ZC3HAV1	99	52.273	Aotus_nancymaae
ENSMUSG00000029826	Zc3hav1	76	63.953	ENSBTAG00000021617	ZC3HAV1	84	64.035	Bos_taurus
ENSMUSG00000029826	Zc3hav1	100	53.720	ENSCJAG00000013080	ZC3HAV1	99	58.554	Callithrix_jacchus
ENSMUSG00000029826	Zc3hav1	100	52.794	ENSCAFG00000004102	ZC3HAV1	100	54.018	Canis_familiaris
ENSMUSG00000029826	Zc3hav1	90	54.601	ENSCAFG00020022308	ZC3HAV1	100	54.018	Canis_lupus_dingo
ENSMUSG00000029826	Zc3hav1	87	54.634	ENSCHIG00000025661	ZC3HAV1	99	54.634	Capra_hircus
ENSMUSG00000029826	Zc3hav1	87	56.148	ENSCPOG00000007709	ZC3HAV1	99	56.148	Cavia_porcellus
ENSMUSG00000029826	Zc3hav1	100	54.589	ENSCCAG00000028272	ZC3HAV1	99	58.473	Cebus_capucinus
ENSMUSG00000029826	Zc3hav1	99	53.359	ENSCATG00000040380	ZC3HAV1	99	53.067	Cercocebus_atys
ENSMUSG00000029826	Zc3hav1	99	59.414	ENSCLAG00000001337	ZC3HAV1	99	59.081	Chinchilla_lanigera
ENSMUSG00000029826	Zc3hav1	100	50.626	ENSCSAG00000008605	ZC3HAV1	100	50.529	Chlorocebus_sabaeus
ENSMUSG00000029826	Zc3hav1	78	58.313	ENSCHOG00000004588	ZC3HAV1	90	58.313	Choloepus_hoffmanni
ENSMUSG00000029826	Zc3hav1	100	50.813	ENSCANG00000030425	ZC3HAV1	100	50.431	Colobus_angolensis_palliatus
ENSMUSG00000029826	Zc3hav1	100	71.713	ENSCGRG00001014912	Zc3hav1	100	71.116	Cricetulus_griseus_chok1gshd
ENSMUSG00000029826	Zc3hav1	100	71.713	ENSCGRG00000014483	Zc3hav1	100	71.116	Cricetulus_griseus_crigri
ENSMUSG00000029826	Zc3hav1	90	55.107	ENSDNOG00000043117	ZC3HAV1	100	55.107	Dasypus_novemcinctus
ENSMUSG00000029826	Zc3hav1	100	53.831	ENSDORG00000026955	Zc3hav1	100	53.333	Dipodomys_ordii
ENSMUSG00000029826	Zc3hav1	74	52.059	ENSETEG00000001167	-	85	52.059	Echinops_telfairi
ENSMUSG00000029826	Zc3hav1	100	56.943	ENSEASG00005010064	ZC3HAV1	99	61.316	Equus_asinus_asinus
ENSMUSG00000029826	Zc3hav1	100	56.171	ENSECAG00000017394	ZC3HAV1	100	56.074	Equus_caballus
ENSMUSG00000029826	Zc3hav1	100	53.520	ENSFCAG00000026631	ZC3HAV1	100	53.140	Felis_catus
ENSMUSG00000029826	Zc3hav1	100	54.449	ENSGGOG00000000653	ZC3HAV1	100	54.062	Gorilla_gorilla
ENSMUSG00000029826	Zc3hav1	87	57.367	ENSHGLG00000006700	ZC3HAV1	97	57.367	Heterocephalus_glaber_female
ENSMUSG00000029826	Zc3hav1	87	57.171	ENSHGLG00100012010	ZC3HAV1	97	57.171	Heterocephalus_glaber_male
ENSMUSG00000029826	Zc3hav1	75	56.618	ENSSTOG00000005662	ZC3HAV1	97	56.618	Ictidomys_tridecemlineatus
ENSMUSG00000029826	Zc3hav1	100	54.154	ENSJJAG00000016894	Zc3hav1	100	53.754	Jaculus_jaculus
ENSMUSG00000029826	Zc3hav1	93	48.264	ENSLAFG00000013954	ZC3HAV1	100	48.715	Loxodonta_africana
ENSMUSG00000029826	Zc3hav1	100	54.932	ENSMFAG00000001484	ZC3HAV1	100	54.642	Macaca_fascicularis
ENSMUSG00000029826	Zc3hav1	100	51.062	ENSMNEG00000036256	ZC3HAV1	100	50.772	Macaca_nemestrina
ENSMUSG00000029826	Zc3hav1	100	50.775	ENSMLEG00000042609	ZC3HAV1	100	50.775	Mandrillus_leucophaeus
ENSMUSG00000029826	Zc3hav1	100	63.864	ENSMAUG00000008329	Zc3hav1	100	63.463	Mesocricetus_auratus
ENSMUSG00000029826	Zc3hav1	100	54.159	ENSMICG00000003101	ZC3HAV1	100	53.578	Microcebus_murinus
ENSMUSG00000029826	Zc3hav1	100	72.072	ENSMOCG00000004943	Zc3hav1	100	71.271	Microtus_ochrogaster
ENSMUSG00000029826	Zc3hav1	100	36.075	ENSMODG00000013769	-	100	35.793	Monodelphis_domestica
ENSMUSG00000029826	Zc3hav1	100	95.386	MGP_CAROLIEiJ_G0028233	Zc3hav1	100	95.386	Mus_caroli
ENSMUSG00000029826	Zc3hav1	100	91.174	MGP_PahariEiJ_G0021990	Zc3hav1	100	91.073	Mus_pahari
ENSMUSG00000029826	Zc3hav1	100	98.394	MGP_SPRETEiJ_G0029232	Zc3hav1	100	98.394	Mus_spretus
ENSMUSG00000029826	Zc3hav1	100	51.294	ENSMPUG00000003805	ZC3HAV1	100	50.719	Mustela_putorius_furo
ENSMUSG00000029826	Zc3hav1	100	49.662	ENSMLUG00000012040	ZC3HAV1	100	49.373	Myotis_lucifugus
ENSMUSG00000029826	Zc3hav1	100	64.770	ENSNGAG00000016695	Zc3hav1	100	64.506	Nannospalax_galili
ENSMUSG00000029826	Zc3hav1	99	57.438	ENSNLEG00000014005	ZC3HAV1	99	57.480	Nomascus_leucogenys
ENSMUSG00000029826	Zc3hav1	70	57.983	ENSOPRG00000008833	-	75	57.983	Ochotona_princeps
ENSMUSG00000029826	Zc3hav1	100	52.976	ENSODEG00000013337	ZC3HAV1	100	52.772	Octodon_degus
ENSMUSG00000029826	Zc3hav1	77	61.667	ENSOCUG00000017892	ZC3HAV1	88	64.012	Oryctolagus_cuniculus
ENSMUSG00000029826	Zc3hav1	76	71.182	ENSOGAG00000010481	ZC3HAV1	83	72.012	Otolemur_garnettii
ENSMUSG00000029826	Zc3hav1	87	55.610	ENSOARG00000011043	ZC3HAV1	99	55.610	Ovis_aries
ENSMUSG00000029826	Zc3hav1	100	54.062	ENSPPAG00000039112	ZC3HAV1	100	53.965	Pan_paniscus
ENSMUSG00000029826	Zc3hav1	100	53.520	ENSPPRG00000024556	ZC3HAV1	100	52.998	Panthera_pardus
ENSMUSG00000029826	Zc3hav1	94	49.590	ENSPTIG00000006337	ZC3HAV1	99	49.179	Panthera_tigris_altaica
ENSMUSG00000029826	Zc3hav1	100	54.062	ENSPTRG00000019750	ZC3HAV1	100	53.965	Pan_troglodytes
ENSMUSG00000029826	Zc3hav1	100	54.730	ENSPANG00000023963	ZC3HAV1	100	54.440	Papio_anubis
ENSMUSG00000029826	Zc3hav1	100	72.445	ENSPEMG00000015140	Zc3hav1	100	72.044	Peromyscus_maniculatus_bairdii
ENSMUSG00000029826	Zc3hav1	75	53.462	ENSPCIG00000021649	-	72	48.024	Phascolarctos_cinereus
ENSMUSG00000029826	Zc3hav1	100	52.606	ENSPPYG00000018044	ZC3HAV1	100	52.606	Pongo_abelii
ENSMUSG00000029826	Zc3hav1	76	50.289	ENSPCAG00000013260	-	85	51.734	Procavia_capensis
ENSMUSG00000029826	Zc3hav1	100	43.822	ENSPCOG00000020892	ZC3HAV1	100	43.629	Propithecus_coquereli
ENSMUSG00000029826	Zc3hav1	71	70.903	ENSPVAG00000017364	ZC3HAV1	78	70.903	Pteropus_vampyrus
ENSMUSG00000029826	Zc3hav1	100	80.981	ENSRNOG00000013948	Zc3hav1	100	80.881	Rattus_norvegicus
ENSMUSG00000029826	Zc3hav1	100	51.981	ENSRBIG00000030676	ZC3HAV1	100	51.594	Rhinopithecus_bieti
ENSMUSG00000029826	Zc3hav1	87	56.731	ENSRROG00000042287	ZC3HAV1	99	56.731	Rhinopithecus_roxellana
ENSMUSG00000029826	Zc3hav1	100	55.785	ENSSBOG00000027573	ZC3HAV1	99	57.590	Saimiri_boliviensis_boliviensis
ENSMUSG00000029826	Zc3hav1	65	40.618	ENSSHAG00000006732	-	71	41.129	Sarcophilus_harrisii
ENSMUSG00000029826	Zc3hav1	86	54.433	ENSSSCG00000016512	ZC3HAV1	83	66.764	Sus_scrofa
ENSMUSG00000029826	Zc3hav1	76	59.701	ENSTTRG00000006055	ZC3HAV1	80	63.025	Tursiops_truncatus
ENSMUSG00000029826	Zc3hav1	100	52.541	ENSUAMG00000015112	ZC3HAV1	100	52.257	Ursus_americanus
ENSMUSG00000029826	Zc3hav1	100	52.349	ENSUMAG00000015455	ZC3HAV1	100	51.969	Ursus_maritimus
ENSMUSG00000029826	Zc3hav1	68	62.976	ENSVPAG00000007462	-	72	64.748	Vicugna_pacos
ENSMUSG00000029826	Zc3hav1	93	53.586	ENSVVUG00000002633	ZC3HAV1	99	56.802	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002376	immune system process	-	IEA	Process
GO:0003723	RNA binding	-	ISO	Function
GO:0003950	NAD+ ADP-ribosyltransferase activity	-	IEA	Function
GO:0005634	nucleus	23776219.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	23776219.	IDA	Component
GO:0005737	cytoplasm	21102435.	ISO	Component
GO:0005764	lysosome	23776219.	IMP	Component
GO:0005770	late endosome	23776219.	IMP	Component
GO:0005829	cytosol	-	ISO	Component
GO:0009615	response to virus	-	ISO	Process
GO:0017151	DEAD/H-box RNA helicase binding	21102435.	ISO	Function
GO:0032481	positive regulation of type I interferon production	21102435.	IDA	Process
GO:0032727	positive regulation of interferon-alpha production	-	ISO	Process
GO:0032728	positive regulation of interferon-beta production	-	ISO	Process
GO:0032781	positive regulation of ATPase activity	21102435.	ISO	Process
GO:0042802	identical protein binding	-	ISO	Function
GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling	21102435.	ISO	Process
GO:0045071	negative regulation of viral genome replication	-	ISO	Process
GO:0045087	innate immune response	-	IEA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0050691	regulation of defense response to virus by host	-	ISO	Process
GO:0051607	defense response to virus	-	IEA	Process
GO:0061014	positive regulation of mRNA catabolic process	-	ISO	Process
GO:0071360	cellular response to exogenous dsRNA	21102435.	IDA	Process
GO:0098586	cellular response to virus	-	ISO	Process
GO:1900246	positive regulation of RIG-I signaling pathway	-	ISO	Process
GO:1900246	positive regulation of RIG-I signaling pathway	21102435.	TAS	Process