EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000094623	-	1080	-	ENSMUSP00000110091	183 (aa)	-	Q9DCC5
ENSMUST00000156463	-	1217	-	-	- (aa)	-	-
ENSMUST00000114445	-	1585	-	ENSMUSP00000110088	71 (aa)	-	D3Z1A9
ENSMUST00000141711	-	498	-	ENSMUSP00000121370	110 (aa)	-	D3Z313
ENSMUST00000114446	-	1719	-	ENSMUSP00000110089	183 (aa)	-	Q9DCC5
ENSMUST00000153699	-	308	-	-	- (aa)	-	-
ENSMUST00000031862	-	1889	XM_017321373	ENSMUSP00000031862	183 (aa)	XP_017176862	Q9DCC5
ENSMUST00000203404	-	2926	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029836	Cbx3	100	100.000	ENSG00000122565	CBX3	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000775	chromosome, centromeric region	-	ISO	Component
GO:0000779	condensed chromosome, centromeric region	11124534.	IDA	Component
GO:0000785	chromatin	16880268.	IDA	Component
GO:0000785	chromatin	-	ISO	Component
GO:0000976	transcription regulatory region sequence-specific DNA binding	24413057.	IDA	Function
GO:0005515	protein binding	10330177.18418073.24413057.	IPI	Function
GO:0005634	nucleus	15469996.20219459.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005635	nuclear envelope	11101528.	IDA	Component
GO:0005719	nuclear euchromatin	-	ISO	Component
GO:0005720	nuclear heterochromatin	10562550.	IDA	Component
GO:0005720	nuclear heterochromatin	-	ISO	Component
GO:0005819	spindle	-	ISO	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0006974	cellular response to DNA damage stimulus	-	ISO	Process
GO:0010369	chromocenter	15322135.	IDA	Component
GO:0019899	enzyme binding	-	ISO	Function
GO:0019904	protein domain specific binding	-	ISO	Function
GO:0031618	nuclear pericentric heterochromatin	16287503.	IDA	Component
GO:0035985	senescence-associated heterochromatin focus	-	ISO	Component
GO:0042802	identical protein binding	-	ISO	Function
GO:0045892	negative regulation of transcription, DNA-templated	10562550.	IDA	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0048511	rhythmic process	-	IEA	Process
GO:0090734	site of DNA damage	-	ISO	Component
GO:1990226	histone methyltransferase binding	-	ISO	Function