EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000029911 (Gene tree)
Gene ID: 381760
Gene Symbol: Ssbp1
Alias: 2810480P10Rik|G630031O20Rik|mtDBP
Full Name: single-stranded DNA binding protein 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 13349
Position: chr6: 40471352-40484700
Accession: 1920040
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000201570	-	2837	-	-	- (aa)	-	-
ENSMUST00000141801	-	732	-	-	- (aa)	-	-
ENSMUST00000114779	-	4398	-	ENSMUSP00000110427	148 (aa)	-	Q8R2K3
ENSMUST00000121360	-	1188	-	ENSMUSP00000113563	148 (aa)	-	Q8R2K3
ENSMUST00000031971	-	1063	XM_006506329	ENSMUSP00000031971	152 (aa)	XP_006506392	Q9CYR0
ENSMUST00000117411	-	933	XM_006506330	ENSMUSP00000114082	148 (aa)	XP_006506393	Q8R2K3
ENSMUST00000117830	-	579	-	ENSMUSP00000113815	76 (aa)	-	D3Z3Y3

Gene Model

Click here to download ENSMUSG00000029911's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03030	DNA replication	KEGG
mmu03430	Mismatch repair	KEGG
mmu03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029911's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029911	Ssbp1	70	30.556	WBGene00019800	mtss-1	59	30.556	Caenorhabditis_elegans
ENSMUSG00000029911	Ssbp1	99	74.150	ENSDARG00000039350	ssbp1	100	74.150	Danio_rerio
ENSMUSG00000029911	Ssbp1	79	42.735	FBgn0010438	mtSSB	81	40.800	Drosophila_melanogaster
ENSMUSG00000029911	Ssbp1	99	92.517	ENSG00000106028	SSBP1	100	91.852	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0003682	chromatin binding	-	ISO	Function
GO:0003697	single-stranded DNA binding	21873635.	IBA	Function
GO:0005739	mitochondrion	18614015.	HDA	Component
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0005739	mitochondrion	16860483.	IDA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0006260	DNA replication	-	IEA	Process
GO:0006264	mitochondrial DNA replication	21873635.	IBA	Process
GO:0009295	nucleoid	21873635.	IBA	Component
GO:0042645	mitochondrial nucleoid	21873635.	IBA	Component
GO:0042645	mitochondrial nucleoid	-	ISO	Component
GO:0051096	positive regulation of helicase activity	21873635.	IBA	Process
GO:0051096	positive regulation of helicase activity	-	ISO	Process
GO:0070584	mitochondrion morphogenesis	16860483.	IMP	Process