EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000029920 (Gene tree)
Gene ID
13990
Gene Symbol
Smarcad1
Alias
D6Pas1|Etl1
Full Name
SWI/SNF-related%2C matrix-associated actin-dependent regulator of chromatin%2C subfamily a%2C containing DEAD/H box 1
Gene Type
protein_coding
Species
Mus_musculus
Status
putative
Strand
Plus strand
Length
73479 bases
Position
chr6:65042583-65116061
Accession
95453
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000031984ResIIIPF04851.151.6e-0911
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000203104-2526--- (aa)--
ENSMUST00000204696-734-ENSMUSP0000014477673 (aa)-A0A0N4SUQ5
ENSMUST00000031984-5168XM_006505509ENSMUSP000000319841021 (aa)XP_006505572Q04692
ENSMUST00000204165-3062--- (aa)--
ENSMUST00000204170-643--- (aa)--
ENSMUST00000204114-472-ENSMUSP0000014522868 (aa)-A0A0N4SVS7
ENSMUST00000205118-600-ENSMUSP0000014534073 (aa)-A0A0N4SUQ5
ENSMUST00000204620-4179-ENSMUSP00000144767123 (aa)-A0A0N4SUP7
ENSMUST00000204420-635--- (aa)--
ENSMUST00000204801-602-ENSMUSP00000145195134 (aa)-A0A0N4SVP9
ENSMUST00000203411-726-ENSMUSP0000014526246 (aa)-A0A0N4SVV9
ENSMUST00000204955-739-ENSMUSP0000014515273 (aa)-A0A0N4SUQ5
ENSMUST00000204111-466--- (aa)--
ENSMUST00000203756-2821--- (aa)--
ENSMUST00000205092-643--- (aa)--
Gene Model
Click here to download ENSMUSG00000029920's gene model file
Pathways
Pathway IDPathway NameSource
mmu04550Signaling pathways regulating pluripotency of stem cellsKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029920's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000029920Smarcad15137.705ENSMUSG00000025001Hells6637.887
ENSMUSG00000029920Smarcad15135.472ENSMUSG00000024921Smarca25940.288
ENSMUSG00000029920Smarcad15035.135ENSMUSG00000028089Chd1l5135.135
ENSMUSG00000029920Smarcad15030.112ENSMUSG00000028702Rad54l6630.112
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000029920Smarcad110092.308ENSG00000163104SMARCAD110096.477Homo_sapiens
ENSMUSG00000029920Smarcad16862.375ENSAPOG00000011446smarcad1a6562.375Acanthochromis_polyacanthus
ENSMUSG00000029920Smarcad110091.545ENSAMEG00000005844SMARCAD110091.545Ailuropoda_melanoleuca
ENSMUSG00000029920Smarcad16868.401ENSACIG00000018326smarcad1a10068.401Amphilophus_citrinellus
ENSMUSG00000029920Smarcad110062.232ENSAOCG00000019762smarcad1a9762.232Amphiprion_ocellaris
ENSMUSG00000029920Smarcad110062.375ENSAPEG00000003889smarcad1a9562.375Amphiprion_percula
ENSMUSG00000029920Smarcad16167.788ENSATEG00000015608smarcad1a6167.788Anabas_testudineus
ENSMUSG00000029920Smarcad19471.503ENSAPLG00000004630SMARCAD110071.606Anas_platyrhynchos
ENSMUSG00000029920Smarcad110069.133ENSACAG00000013554SMARCAD110069.328Anolis_carolinensis
ENSMUSG00000029920Smarcad110091.837ENSANAG00000020488SMARCAD19992.913Aotus_nancymaae
ENSMUSG00000029920Smarcad16366.147ENSACLG00000017063smarcad1a6266.147Astatotilapia_calliptera
ENSMUSG00000029920Smarcad17758.477ENSAMXG00000019130smarcad1b8758.722Astyanax_mexicanus
ENSMUSG00000029920Smarcad17061.376ENSAMXG00000015470smarcad1a9861.376Astyanax_mexicanus
ENSMUSG00000029920Smarcad110091.165ENSBTAG00000017061SMARCAD110091.165Bos_taurus
ENSMUSG00000029920Smarcad110092.300ENSCJAG00000006778SMARCAD110092.300Callithrix_jacchus
ENSMUSG00000029920Smarcad110091.156ENSCAFG00000010026SMARCAD110091.059Canis_familiaris
ENSMUSG00000029920Smarcad18692.760ENSCAFG00020003994SMARCAD19992.760Canis_lupus_dingo
ENSMUSG00000029920Smarcad110091.448ENSCHIG00000012905SMARCAD110091.448Capra_hircus
ENSMUSG00000029920Smarcad110092.121ENSTSYG00000002706SMARCAD110092.121Carlito_syrichta
ENSMUSG00000029920Smarcad19075.000ENSCAPG00000016744SMARCAD19675.970Cavia_aperea
ENSMUSG00000029920Smarcad110090.610ENSCPOG00000011398SMARCAD110090.610Cavia_porcellus
ENSMUSG00000029920Smarcad110092.113ENSCCAG00000022264SMARCAD110096.141Cebus_capucinus
ENSMUSG00000029920Smarcad110092.502ENSCATG00000035663SMARCAD110093.476Cercocebus_atys
ENSMUSG00000029920Smarcad18293.571ENSCSAG00000004186SMARCAD110093.571Chlorocebus_sabaeus
ENSMUSG00000029920Smarcad110071.962ENSCPBG00000013203SMARCAD110072.334Chrysemys_picta_bellii
ENSMUSG00000029920Smarcad16449.399ENSCING00000001688-9949.399Ciona_intestinalis
ENSMUSG00000029920Smarcad110092.405ENSCANG00000003556SMARCAD110096.477Colobus_angolensis_palliatus
ENSMUSG00000029920Smarcad110094.336ENSCGRG00001015056Smarcad110094.336Cricetulus_griseus_chok1gshd
ENSMUSG00000029920Smarcad110094.336ENSCGRG00000014087Smarcad110094.336Cricetulus_griseus_crigri
ENSMUSG00000029920Smarcad110062.054ENSCSEG00000014419-8562.054Cynoglossus_semilaevis
ENSMUSG00000029920Smarcad16662.649ENSCSEG00000017903smarcad1a10045.941Cynoglossus_semilaevis
ENSMUSG00000029920Smarcad18056.469ENSDARG00000073721smarcad1b8556.747Danio_rerio
ENSMUSG00000029920Smarcad17664.476ENSDARG00000014041smarcad1a9254.686Danio_rerio
ENSMUSG00000029920Smarcad110091.139ENSDNOG00000000806-10091.139Dasypus_novemcinctus
ENSMUSG00000029920Smarcad110089.116ENSDORG00000012331Smarcad110089.116Dipodomys_ordii
ENSMUSG00000029920Smarcad16345.692FBgn0032157Etl18044.575Drosophila_melanogaster
ENSMUSG00000029920Smarcad16145.866ENSEBUG00000003969smarcad1a9646.029Eptatretus_burgeri
ENSMUSG00000029920Smarcad110091.448ENSEASG00005012382SMARCAD110091.448Equus_asinus_asinus
ENSMUSG00000029920Smarcad110091.448ENSECAG00000011562SMARCAD110091.448Equus_caballus
ENSMUSG00000029920Smarcad110050.512ENSELUG00000018535smarcad1a10050.140Esox_lucius
ENSMUSG00000029920Smarcad17956.485ENSELUG00000019154smarcad1b8356.485Esox_lucius
ENSMUSG00000029920Smarcad110091.342ENSFCAG00000003958SMARCAD110096.477Felis_catus
ENSMUSG00000029920Smarcad110066.473ENSFALG00000006089SMARCAD110066.473Ficedula_albicollis
ENSMUSG00000029920Smarcad110091.520ENSFDAG00000017027SMARCAD110091.520Fukomys_damarensis
ENSMUSG00000029920Smarcad16565.022ENSFHEG00000012778smarcad1a6364.118Fundulus_heteroclitus
ENSMUSG00000029920Smarcad18457.292ENSGMOG00000018995smarcad1a9758.035Gadus_morhua
ENSMUSG00000029920Smarcad18667.531ENSGALG00000037339SMARCAD19967.531Gallus_gallus
ENSMUSG00000029920Smarcad19066.193ENSGAFG00000013498smarcad1a10046.305Gambusia_affinis
ENSMUSG00000029920Smarcad18658.211ENSGACG00000007327smarcad1a9958.211Gasterosteus_aculeatus
ENSMUSG00000029920Smarcad110072.367ENSGAGG00000008582SMARCAD110072.560Gopherus_agassizii
ENSMUSG00000029920Smarcad110092.405ENSGGOG00000023001SMARCAD110092.405Gorilla_gorilla
ENSMUSG00000029920Smarcad16365.991ENSHBUG00000011042smarcad1a6065.991Haplochromis_burtoni
ENSMUSG00000029920Smarcad110091.650ENSHGLG00000005070SMARCAD110091.650Heterocephalus_glaber_female
ENSMUSG00000029920Smarcad110091.650ENSHGLG00100006812SMARCAD110091.650Heterocephalus_glaber_male
ENSMUSG00000029920Smarcad18563.919ENSHCOG00000007848smarcad1a6162.332Hippocampus_comes
ENSMUSG00000029920Smarcad17864.945ENSIPUG00000000242smarcad1a9560.194Ictalurus_punctatus
ENSMUSG00000029920Smarcad18156.595ENSIPUG00000022817smarcad1b8957.074Ictalurus_punctatus
ENSMUSG00000029920Smarcad110092.023ENSSTOG00000001227SMARCAD110092.023Ictidomys_tridecemlineatus
ENSMUSG00000029920Smarcad110092.600ENSJJAG00000022342Smarcad110092.600Jaculus_jaculus
ENSMUSG00000029920Smarcad16463.897ENSKMAG00000021351smarcad1a6363.447Kryptolebias_marmoratus
ENSMUSG00000029920Smarcad19764.040ENSLBEG00000008088smarcad1a9464.040Labrus_bergylta
ENSMUSG00000029920Smarcad110053.568ENSLOCG00000012909smarcad1a10055.319Lepisosteus_oculatus
ENSMUSG00000029920Smarcad110089.484ENSLAFG00000000040SMARCAD110089.484Loxodonta_africana
ENSMUSG00000029920Smarcad110092.405ENSMFAG00000042606SMARCAD19993.454Macaca_fascicularis
ENSMUSG00000029920Smarcad18693.454ENSMMUG00000022242SMARCAD19993.454Macaca_mulatta
ENSMUSG00000029920Smarcad110092.308ENSMNEG00000038117SMARCAD110096.309Macaca_nemestrina
ENSMUSG00000029920Smarcad110092.502ENSMLEG00000038333SMARCAD110096.477Mandrillus_leucophaeus
ENSMUSG00000029920Smarcad16962.953ENSMAMG00000000933smarcad1a6862.953Mastacembelus_armatus
ENSMUSG00000029920Smarcad16366.147ENSMZEG00005005203smarcad1a6266.147Maylandia_zebra
ENSMUSG00000029920Smarcad19463.983ENSMGAG00000005577SMARCAD110063.983Meleagris_gallopavo
ENSMUSG00000029920Smarcad110094.434ENSMAUG00000008417Smarcad110094.434Mesocricetus_auratus
ENSMUSG00000029920Smarcad110091.456ENSMICG00000009746SMARCAD110091.456Microcebus_murinus
ENSMUSG00000029920Smarcad110094.238ENSMOCG00000017142Smarcad110094.238Microtus_ochrogaster
ENSMUSG00000029920Smarcad17758.052ENSMMOG00000000275smarcad1a9858.052Mola_mola
ENSMUSG00000029920Smarcad110079.440ENSMODG00000019268SMARCAD110079.440Monodelphis_domestica
ENSMUSG00000029920Smarcad19599.526MGP_CAROLIEiJ_G0028458-7799.526Mus_caroli
ENSMUSG00000029920Smarcad110098.629MGP_PahariEiJ_G0022198Smarcad110098.629Mus_pahari
ENSMUSG00000029920Smarcad110099.706MGP_SPRETEiJ_G0029462Smarcad110099.706Mus_spretus
ENSMUSG00000029920Smarcad110091.351ENSMPUG00000002111SMARCAD110091.351Mustela_putorius_furo
ENSMUSG00000029920Smarcad110088.630ENSMLUG00000000425SMARCAD110088.630Myotis_lucifugus
ENSMUSG00000029920Smarcad110091.910ENSNGAG00000000810Smarcad110091.910Nannospalax_galili
ENSMUSG00000029920Smarcad16166.346ENSNBRG00000012749smarcad1a7466.346Neolamprologus_brichardi
ENSMUSG00000029920Smarcad110092.405ENSNLEG00000014225SMARCAD110096.477Nomascus_leucogenys
ENSMUSG00000029920Smarcad110091.165ENSODEG00000004334SMARCAD110091.068Octodon_degus
ENSMUSG00000029920Smarcad110052.284ENSONIG00000015059smarcad1a8958.142Oreochromis_niloticus
ENSMUSG00000029920Smarcad18082.367ENSOANG00000013764SMARCAD110082.609Ornithorhynchus_anatinus
ENSMUSG00000029920Smarcad110092.300ENSOCUG00000017283SMARCAD110092.300Oryctolagus_cuniculus
ENSMUSG00000029920Smarcad16366.615ENSORLG00000004869smarcad1a6464.095Oryzias_latipes
ENSMUSG00000029920Smarcad16366.459ENSORLG00020020569smarcad1a6463.947Oryzias_latipes_hni
ENSMUSG00000029920Smarcad16366.303ENSORLG00015009045smarcad1a6463.798Oryzias_latipes_hsok
ENSMUSG00000029920Smarcad16564.812ENSOMEG00000023032smarcad1a6960.685Oryzias_melastigma
ENSMUSG00000029920Smarcad110091.156ENSOGAG00000011444SMARCAD110091.156Otolemur_garnettii
ENSMUSG00000029920Smarcad110091.448ENSOARG00000017851SMARCAD110091.448Ovis_aries
ENSMUSG00000029920Smarcad110092.502ENSPPAG00000035715SMARCAD110092.502Pan_paniscus
ENSMUSG00000029920Smarcad110091.342ENSPPRG00000024756SMARCAD110096.477Panthera_pardus
ENSMUSG00000029920Smarcad110091.165ENSPTIG00000017868SMARCAD110091.165Panthera_tigris_altaica
ENSMUSG00000029920Smarcad110092.405ENSPTRG00000023126SMARCAD110096.477Pan_troglodytes
ENSMUSG00000029920Smarcad110091.359ENSPANG00000019757SMARCAD110091.359Papio_anubis
ENSMUSG00000029920Smarcad110071.374ENSPSIG00000010255SMARCAD110071.374Pelodiscus_sinensis
ENSMUSG00000029920Smarcad16364.230ENSPMGG00000010735smarcad1a9562.556Periophthalmus_magnuspinnatus
ENSMUSG00000029920Smarcad110079.843ENSPEMG00000001854Smarcad110079.746Peromyscus_maniculatus_bairdii
ENSMUSG00000029920Smarcad19947.443ENSPMAG00000003516smarcad1a9947.947Petromyzon_marinus
ENSMUSG00000029920Smarcad17785.461ENSPCIG00000008137SMARCAD19886.813Phascolarctos_cinereus
ENSMUSG00000029920Smarcad19166.147ENSPFOG00000019116smarcad1a7166.147Poecilia_formosa
ENSMUSG00000029920Smarcad16365.991ENSPLAG00000000108smarcad1a5865.991Poecilia_latipinna
ENSMUSG00000029920Smarcad16366.147ENSPMEG00000009155smarcad1a5866.147Poecilia_mexicana
ENSMUSG00000029920Smarcad17666.615ENSPREG00000018185smarcad1a8366.615Poecilia_reticulata
ENSMUSG00000029920Smarcad110091.829ENSPPYG00000014935SMARCAD110091.829Pongo_abelii
ENSMUSG00000029920Smarcad17393.115ENSPCOG00000020478SMARCAD18993.115Propithecus_coquereli
ENSMUSG00000029920Smarcad110089.806ENSPVAG00000001760SMARCAD110089.806Pteropus_vampyrus
ENSMUSG00000029920Smarcad16165.865ENSPNYG00000010087smarcad1a8560.000Pundamilia_nyererei
ENSMUSG00000029920Smarcad17659.142ENSPNAG00000010099smarcad1b8458.772Pygocentrus_nattereri
ENSMUSG00000029920Smarcad110050.563ENSPNAG00000001663smarcad1a10050.563Pygocentrus_nattereri
ENSMUSG00000029920Smarcad110097.070ENSRNOG00000006391Smarcad110097.070Rattus_norvegicus
ENSMUSG00000029920Smarcad110092.308ENSRBIG00000041989SMARCAD110092.308Rhinopithecus_bieti
ENSMUSG00000029920Smarcad110092.308ENSRROG00000035309SMARCAD110092.308Rhinopithecus_roxellana
ENSMUSG00000029920Smarcad110092.113ENSSBOG00000032114SMARCAD110096.141Saimiri_boliviensis_boliviensis
ENSMUSG00000029920Smarcad110080.386ENSSHAG00000001279SMARCAD110080.290Sarcophilus_harrisii
ENSMUSG00000029920Smarcad110050.470ENSSFOG00015016814smarcad1b10050.140Scleropages_formosus
ENSMUSG00000029920Smarcad17557.662ENSSFOG00015020909smarcad1a10057.662Scleropages_formosus
ENSMUSG00000029920Smarcad19763.897ENSSMAG00000001326smarcad1a9563.897Scophthalmus_maximus
ENSMUSG00000029920Smarcad16862.841ENSSDUG00000022338smarcad1a8262.841Seriola_dumerili
ENSMUSG00000029920Smarcad16862.069ENSSLDG00000024986smarcad1a6562.069Seriola_lalandi_dorsalis
ENSMUSG00000029920Smarcad15883.920ENSSPUG00000004633SMARCAD110083.920Sphenodon_punctatus
ENSMUSG00000029920Smarcad16863.037ENSSPAG00000001970smarcad1a6959.973Stegastes_partitus
ENSMUSG00000029920Smarcad110091.448ENSSSCG00000009193SMARCAD110092.747Sus_scrofa
ENSMUSG00000029920Smarcad17676.366ENSTGUG00000003127SMARCAD110076.620Taeniopygia_guttata
ENSMUSG00000029920Smarcad18457.356ENSTNIG00000017585smarcad1a9957.356Tetraodon_nigroviridis
ENSMUSG00000029920Smarcad19096.627ENSTBEG00000002789SMARCAD19196.627Tupaia_belangeri
ENSMUSG00000029920Smarcad19890.476ENSTTRG00000000226SMARCAD110089.782Tursiops_truncatus
ENSMUSG00000029920Smarcad110091.642ENSUAMG00000022262SMARCAD19992.992Ursus_americanus
ENSMUSG00000029920Smarcad110091.732ENSUMAG00000004549SMARCAD110091.732Ursus_maritimus
ENSMUSG00000029920Smarcad110091.351ENSVVUG00000007271SMARCAD110092.866Vulpes_vulpes
ENSMUSG00000029920Smarcad18862.324ENSXETG00000019214smarcad110065.262Xenopus_tropicalis
ENSMUSG00000029920Smarcad17657.935ENSXCOG00000005232smarcad1a9056.061Xiphophorus_couchianus
ENSMUSG00000029920Smarcad16365.835ENSXMAG00000015350smarcad1a5865.835Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000018regulation of DNA recombination11031099.ISSProcess
GO:0000166nucleotide binding-IEAFunction
GO:0000729DNA double-strand break processing-ISOProcess
GO:0000792heterochromatin21549307.IDAComponent
GO:0003677DNA binding-ISOFunction
GO:0004386helicase activity-IEAFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus8219362.21549307.IDAComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005694chromosome-IEAComponent
GO:0006281DNA repair-IEAProcess
GO:0006325chromatin organization-IEAProcess
GO:0006974cellular response to DNA damage stimulus-IEAProcess
GO:0016787hydrolase activity-IEAFunction
GO:0035861site of double-strand break-ISOComponent
GO:0043044ATP-dependent chromatin remodeling-ISOProcess
GO:0043596nuclear replication fork-ISOComponent
GO:0051304chromosome separation-ISOProcess
GO:0070932histone H3 deacetylation-ISOProcess
GO:0070933histone H4 deacetylation-ISOProcess

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