EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000030062 (Gene tree)
Gene ID: 103963
Gene Symbol: Rpn1
Alias: D6Wsu137e|Rpn-1
Full Name: ribophorin I
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 20823
Position: chr6: 88084482-88105304
Accession: 98084
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000032143	-	3633	-	ENSMUSP00000032143	608 (aa)	-	Q91YQ5
ENSMUST00000204838	-	789	-	ENSMUSP00000144711	90 (aa)	-	A0A0N4SUJ8
ENSMUST00000204164	-	673	-	-	- (aa)	-	-
ENSMUST00000203813	-	855	-	-	- (aa)	-	-
ENSMUST00000204024	-	821	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000030062's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00510	N-Glycan biosynthesis	KEGG
mmu01100	Metabolic pathways	KEGG
mmu04141	Protein processing in endoplasmic reticulum	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000030062's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000030062	Rpn1	100	94.901	ENSG00000163902	RPN1	100	97.241	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004579	dolichyl-diphosphooligosaccharide-protein glycotransferase activity	21873635.	IBA	Function
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0005789	endoplasmic reticulum membrane	9930704.	IDA	Component
GO:0005791	rough endoplasmic reticulum	25009997.	IDA	Component
GO:0005791	rough endoplasmic reticulum	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006486	protein glycosylation	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0018279	protein N-linked glycosylation via asparagine	21873635.	IBA	Process
GO:0018279	protein N-linked glycosylation via asparagine	-	ISO	Process