EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000030079 (Gene tree)
Gene ID: 56505
Gene Symbol: Ruvbl1
Alias: 2510009G06Rik|Pontin52|Tip49a
Full Name: RuvB-like protein 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 32164
Position: chr6: 88465409-88497572
Accession: 1928760
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000032165	-	1675	-	ENSMUSP00000032165	456 (aa)	-	P60122
ENSMUST00000129035	-	666	-	ENSMUSP00000117925	134 (aa)	-	D3YW60

Gene Model

Click here to download ENSMUSG00000030079's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04310	Wnt signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000030079's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000030079	Ruvbl1	100	47.015	FBgn0040075	rept	91	45.254	Drosophila_melanogaster
ENSMUSG00000030079	Ruvbl1	100	100.000	ENSG00000175792	RUVBL1	100	99.781	Homo_sapiens
ENSMUSG00000030079	Ruvbl1	100	47.761	ENSG00000183207	RUVBL2	92	57.000	Homo_sapiens
ENSMUSG00000030079	Ruvbl1	100	47.761	ENSMUSG00000003868	Ruvbl2	95	51.969	Mus_musculus
ENSMUSG00000030079	Ruvbl1	100	80.597	YDR190C	RVB1	94	70.968	Saccharomyces_cerevisiae
ENSMUSG00000030079	Ruvbl1	100	45.588	YPL235W	RVB2	91	42.697	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000492	box C/D snoRNP assembly	21873635.	IBA	Process
GO:0000812	Swr1 complex	21873635.	IBA	Component
GO:0000812	Swr1 complex	-	ISO	Component
GO:0001094	TFIID-class transcription factor complex binding	17636026.	IPI	Function
GO:0003678	DNA helicase activity	-	ISO	Function
GO:0003713	transcription coactivator activity	-	ISO	Function
GO:0004003	ATP-dependent DNA helicase activity	21873635.	IBA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005515	protein binding	17636026.26496610.	IPI	Function
GO:0005524	ATP binding	17636026.	IDA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006310	DNA recombination	-	IEA	Process
GO:0006325	chromatin organization	-	IEA	Process
GO:0006338	chromatin remodeling	21873635.	IBA	Process
GO:0006357	regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0010756	positive regulation of plasminogen activation	-	ISO	Process
GO:0016363	nuclear matrix	-	ISO	Component
GO:0016573	histone acetylation	21873635.	IBA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0016887	ATPase activity	-	ISO	Function
GO:0017025	TBP-class protein binding	-	ISO	Function
GO:0031011	Ino80 complex	21873635.	IBA	Component
GO:0031011	Ino80 complex	-	ISO	Component
GO:0032991	protein-containing complex	-	ISO	Component
GO:0035267	NuA4 histone acetyltransferase complex	21873635.	IBA	Component
GO:0035267	NuA4 histone acetyltransferase complex	-	ISO	Component
GO:0040008	regulation of growth	-	IEA	Process
GO:0043140	ATP-dependent 3'-5' DNA helicase activity	-	ISO	Function
GO:0043141	ATP-dependent 5'-3' DNA helicase activity	-	IEA	Function
GO:0043531	ADP binding	17636026.	IDA	Function
GO:0043967	histone H4 acetylation	-	ISO	Process
GO:0043968	histone H2A acetylation	-	ISO	Process
GO:0051117	ATPase binding	17636026.	IPI	Function
GO:0051301	cell division	-	IEA	Process
GO:0071339	MLL1 complex	-	ISO	Component
GO:0090263	positive regulation of canonical Wnt signaling pathway	-	ISO	Process
GO:0097255	R2TP complex	21873635.	IBA	Component
GO:0097255	R2TP complex	-	ISO	Component
GO:1990904	ribonucleoprotein complex	19299493.	IDA	Component
GO:2000269	regulation of fibroblast apoptotic process	-	ISO	Process