EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000204502	-	517	-	-	- (aa)	-	-
ENSMUST00000125016	-	472	-	-	- (aa)	-	-
ENSMUST00000139676	-	621	-	-	- (aa)	-	-
ENSMUST00000203200	-	803	-	-	- (aa)	-	-
ENSMUST00000032168	-	3172	-	ENSMUSP00000032168	476 (aa)	-	P61620
ENSMUST00000203943	-	666	-	-	- (aa)	-	-
ENSMUST00000139551	-	380	-	-	- (aa)	-	-
ENSMUST00000130807	-	794	-	-	- (aa)	-	-
ENSMUST00000155079	-	369	-	-	- (aa)	-	-
ENSMUST00000136103	-	720	-	-	- (aa)	-	-
ENSMUST00000145421	-	2523	-	-	- (aa)	-	-
ENSMUST00000130918	-	935	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu03060	Protein export	KEGG
mmu04141	Protein processing in endoplasmic reticulum	KEGG
mmu04145	Phagosome	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000030082	Sec61a1	100	89.286	FBgn0086357	Sec61alpha	100	89.286	Drosophila_melanogaster
ENSMUSG00000030082	Sec61a1	100	100.000	ENSG00000058262	SEC61A1	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005048	signal sequence binding	21873635.	IBA	Function
GO:0005262	calcium channel activity	-	ISO	Function
GO:0005783	endoplasmic reticulum	21873635.	IBA	Component
GO:0005784	Sec61 translocon complex	21873635.	IBA	Component
GO:0005789	endoplasmic reticulum membrane	21873635.	IBA	Component
GO:0005789	endoplasmic reticulum membrane	-	ISO	Component
GO:0005791	rough endoplasmic reticulum	-	ISO	Component
GO:0006613	cotranslational protein targeting to membrane	-	ISO	Process
GO:0006614	SRP-dependent cotranslational protein targeting to membrane	22375059.	ISO	Process
GO:0006616	SRP-dependent cotranslational protein targeting to membrane, translocation	21873635.	IBA	Process
GO:0006620	posttranslational protein targeting to endoplasmic reticulum membrane	21873635.	IBA	Process
GO:0006620	posttranslational protein targeting to endoplasmic reticulum membrane	22375059.	ISO	Process
GO:0007029	endoplasmic reticulum organization	22375059.	ISO	Process
GO:0007275	multicellular organism development	-	IEA	Process
GO:0008320	protein transmembrane transporter activity	21873635.	IBA	Function
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	22375059.	ISO	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0022857	transmembrane transporter activity	14508489.14508490.	EXP	Function
GO:0031204	posttranslational protein targeting to membrane, translocation	-	ISO	Process
GO:0039019	pronephric nephron development	27392076.	IMP	Process
GO:0043022	ribosome binding	16705175.	IDA	Function