EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000030138 (Gene tree)
Gene ID: 213895
Gene Symbol: Bms1
Alias: Bms1l
Full Name: BMS1%2C ribosome biogenesis factor
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 36094 bases
Position: chr6:118383381-118419474
Accession: 2446132
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000032237	AARP2CN	PF08142.12	1.4e-29	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000203444	-	420	-	-	- (aa)	-	-
ENSMUST00000205207	-	3071	-	-	- (aa)	-	-
ENSMUST00000032237	-	4345	XM_017321497	ENSMUSP00000032237	1284 (aa)	XP_017176986	Q6PGF5

Gene Model

Click here to download ENSMUSG00000030138's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000030138's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000030138	Bms1	99	85.070	ENSG00000165733	BMS1	99	84.914	Homo_sapiens
ENSMUSG00000030138	Bms1	72	71.280	ENSAPOG00000002296	bms1	99	58.813	Acanthochromis_polyacanthus
ENSMUSG00000030138	Bms1	99	84.109	ENSAMEG00000016834	BMS1	99	84.419	Ailuropoda_melanoleuca
ENSMUSG00000030138	Bms1	78	79.292	ENSACIG00000002588	bms1	90	77.778	Amphilophus_citrinellus
ENSMUSG00000030138	Bms1	85	70.316	ENSAOCG00000018088	bms1	99	60.893	Amphiprion_ocellaris
ENSMUSG00000030138	Bms1	82	71.525	ENSAPEG00000014673	bms1	98	60.856	Amphiprion_percula
ENSMUSG00000030138	Bms1	89	67.737	ENSATEG00000023465	bms1	55	63.047	Anabas_testudineus
ENSMUSG00000030138	Bms1	96	71.832	ENSAPLG00000003759	BMS1	99	72.431	Anas_platyrhynchos
ENSMUSG00000030138	Bms1	99	69.609	ENSACAG00000004537	-	99	70.115	Anolis_carolinensis
ENSMUSG00000030138	Bms1	99	84.705	ENSANAG00000023432	BMS1	99	84.705	Aotus_nancymaae
ENSMUSG00000030138	Bms1	87	66.190	ENSACLG00000001294	bms1	98	60.951	Astatotilapia_calliptera
ENSMUSG00000030138	Bms1	99	84.926	ENSBTAG00000012878	BMS1	99	84.538	Bos_taurus
ENSMUSG00000030138	Bms1	79	52.174	WBGene00022021	Y61A9LA.10	96	52.542	Caenorhabditis_elegans
ENSMUSG00000030138	Bms1	99	85.226	ENSCJAG00000021705	BMS1	99	84.837	Callithrix_jacchus
ENSMUSG00000030138	Bms1	99	84.615	ENSCAFG00000007114	BMS1	99	84.771	Canis_familiaris
ENSMUSG00000030138	Bms1	99	84.615	ENSCAFG00020025282	BMS1	99	84.771	Canis_lupus_dingo
ENSMUSG00000030138	Bms1	99	84.448	ENSCHIG00000023251	BMS1	99	84.059	Capra_hircus
ENSMUSG00000030138	Bms1	99	81.138	ENSCAPG00000008652	BMS1	99	80.514	Cavia_aperea
ENSMUSG00000030138	Bms1	99	84.879	ENSCPOG00000000502	BMS1	99	84.256	Cavia_porcellus
ENSMUSG00000030138	Bms1	99	70.396	ENSCCAG00000024969	-	99	69.930	Cebus_capucinus
ENSMUSG00000030138	Bms1	90	64.792	ENSCATG00000008695	-	96	63.715	Cercocebus_atys
ENSMUSG00000030138	Bms1	99	85.303	ENSCATG00000030625	-	99	84.759	Cercocebus_atys
ENSMUSG00000030138	Bms1	99	85.125	ENSCLAG00000002446	BMS1	99	84.502	Chinchilla_lanigera
ENSMUSG00000030138	Bms1	99	85.925	ENSCSAG00000011118	BMS1	99	85.381	Chlorocebus_sabaeus
ENSMUSG00000030138	Bms1	99	82.700	ENSCHOG00000011055	BMS1	99	82.545	Choloepus_hoffmanni
ENSMUSG00000030138	Bms1	99	72.193	ENSCPBG00000025581	BMS1	98	72.931	Chrysemys_picta_bellii
ENSMUSG00000030138	Bms1	79	58.596	ENSCING00000003181	-	96	58.867	Ciona_intestinalis
ENSMUSG00000030138	Bms1	68	53.976	ENSCSAVG00000004113	-	88	53.738	Ciona_savignyi
ENSMUSG00000030138	Bms1	99	86.625	ENSCANG00000011609	BMS1	99	85.614	Colobus_angolensis_palliatus
ENSMUSG00000030138	Bms1	100	91.071	ENSCGRG00001019461	Bms1	100	90.839	Cricetulus_griseus_chok1gshd
ENSMUSG00000030138	Bms1	100	91.071	ENSCGRG00000009016	Bms1	99	90.839	Cricetulus_griseus_crigri
ENSMUSG00000030138	Bms1	80	74.638	ENSCVAG00000008371	bms1	98	63.139	Cyprinodon_variegatus
ENSMUSG00000030138	Bms1	88	65.873	ENSDARG00000054154	bms1	98	61.376	Danio_rerio
ENSMUSG00000030138	Bms1	99	83.991	ENSDNOG00000015761	BMS1	99	83.437	Dasypus_novemcinctus
ENSMUSG00000030138	Bms1	99	85.070	ENSDORG00000002982	Bms1	99	84.837	Dipodomys_ordii
ENSMUSG00000030138	Bms1	77	60.053	FBgn0036686	CG7728	98	58.853	Drosophila_melanogaster
ENSMUSG00000030138	Bms1	86	83.036	ENSETEG00000009554	BMS1	91	83.036	Echinops_telfairi
ENSMUSG00000030138	Bms1	99	84.848	ENSEASG00005006894	BMS1	99	85.082	Equus_asinus_asinus
ENSMUSG00000030138	Bms1	99	85.004	ENSECAG00000001358	BMS1	99	85.237	Equus_caballus
ENSMUSG00000030138	Bms1	84	73.363	ENSELUG00000001756	bms1	98	61.304	Esox_lucius
ENSMUSG00000030138	Bms1	99	85.603	ENSFCAG00000011220	BMS1	99	85.370	Felis_catus
ENSMUSG00000030138	Bms1	99	70.770	ENSFALG00000006882	BMS1	99	71.071	Ficedula_albicollis
ENSMUSG00000030138	Bms1	99	83.268	ENSFDAG00000001422	BMS1	99	82.307	Fukomys_damarensis
ENSMUSG00000030138	Bms1	85	68.388	ENSFHEG00000003367	bms1	98	61.351	Fundulus_heteroclitus
ENSMUSG00000030138	Bms1	93	64.706	ENSGMOG00000000718	bms1	86	75.000	Gadus_morhua
ENSMUSG00000030138	Bms1	99	71.330	ENSGALG00000002624	BMS1	99	71.914	Gallus_gallus
ENSMUSG00000030138	Bms1	99	59.059	ENSGACG00000015334	bms1	99	59.225	Gasterosteus_aculeatus
ENSMUSG00000030138	Bms1	99	72.517	ENSGAGG00000003467	BMS1	99	72.292	Gopherus_agassizii
ENSMUSG00000030138	Bms1	87	66.409	ENSHBUG00000022628	bms1	59	57.179	Haplochromis_burtoni
ENSMUSG00000030138	Bms1	99	83.164	ENSHGLG00000000477	BMS1	99	82.229	Heterocephalus_glaber_female
ENSMUSG00000030138	Bms1	99	83.242	ENSHGLG00100002176	BMS1	99	82.307	Heterocephalus_glaber_male
ENSMUSG00000030138	Bms1	90	66.071	ENSHCOG00000017604	bms1	99	60.000	Hippocampus_comes
ENSMUSG00000030138	Bms1	99	59.849	ENSIPUG00000017855	bms1	99	61.128	Ictalurus_punctatus
ENSMUSG00000030138	Bms1	99	85.459	ENSSTOG00000015063	BMS1	99	85.070	Ictidomys_tridecemlineatus
ENSMUSG00000030138	Bms1	100	85.260	ENSJJAG00000017328	Bms1	99	85.202	Jaculus_jaculus
ENSMUSG00000030138	Bms1	57	64.750	ENSKMAG00000021982	bms1	89	66.139	Kryptolebias_marmoratus
ENSMUSG00000030138	Bms1	82	71.071	ENSLBEG00000028208	bms1	98	60.124	Labrus_bergylta
ENSMUSG00000030138	Bms1	99	60.385	ENSLACG00000001600	BMS1	100	61.137	Latimeria_chalumnae
ENSMUSG00000030138	Bms1	99	82.284	ENSLAFG00000006250	BMS1	99	81.974	Loxodonta_africana
ENSMUSG00000030138	Bms1	82	88.008	ENSMFAG00000037771	BMS1	97	87.234	Macaca_fascicularis
ENSMUSG00000030138	Bms1	90	72.735	ENSMMUG00000007426	-	98	71.404	Macaca_mulatta
ENSMUSG00000030138	Bms1	85	67.155	ENSMLEG00000029084	-	97	66.667	Mandrillus_leucophaeus
ENSMUSG00000030138	Bms1	99	62.360	ENSMAMG00000020855	bms1	90	70.046	Mastacembelus_armatus
ENSMUSG00000030138	Bms1	88	65.385	ENSMZEG00005005663	bms1	98	60.873	Maylandia_zebra
ENSMUSG00000030138	Bms1	95	69.832	ENSMGAG00000001170	BMS1	99	70.579	Meleagris_gallopavo
ENSMUSG00000030138	Bms1	100	90.839	ENSMAUG00000002195	Bms1	100	90.450	Mesocricetus_auratus
ENSMUSG00000030138	Bms1	99	84.071	ENSMICG00000009977	BMS1	99	84.071	Microcebus_murinus
ENSMUSG00000030138	Bms1	100	89.969	ENSMOCG00000002038	Bms1	99	89.658	Microtus_ochrogaster
ENSMUSG00000030138	Bms1	85	67.423	ENSMMOG00000000977	bms1	95	66.272	Mola_mola
ENSMUSG00000030138	Bms1	99	76.592	ENSMODG00000001177	BMS1	99	76.710	Monodelphis_domestica
ENSMUSG00000030138	Bms1	88	73.016	ENSMALG00000009680	bms1	98	60.000	Monopterus_albus
ENSMUSG00000030138	Bms1	81	83.835	MGP_CAROLIEiJ_G0028785	-	86	98.786	Mus_caroli
ENSMUSG00000030138	Bms1	100	95.483	MGP_PahariEiJ_G0022539	Bms1	100	95.483	Mus_pahari
ENSMUSG00000030138	Bms1	99	98.987	MGP_SPRETEiJ_G0029816	Bms1	99	98.987	Mus_spretus
ENSMUSG00000030138	Bms1	99	84.609	ENSMPUG00000017276	BMS1	99	83.576	Mustela_putorius_furo
ENSMUSG00000030138	Bms1	99	83.904	ENSMLUG00000003260	BMS1	99	83.748	Myotis_lucifugus
ENSMUSG00000030138	Bms1	95	85.406	ENSNGAG00000015258	Bms1	96	87.149	Nannospalax_galili
ENSMUSG00000030138	Bms1	99	83.593	ENSNLEG00000015791	BMS1	99	83.281	Nomascus_leucogenys
ENSMUSG00000030138	Bms1	81	94.524	ENSOPRG00000005195	BMS1	81	94.524	Ochotona_princeps
ENSMUSG00000030138	Bms1	100	83.593	ENSODEG00000005554	BMS1	100	83.437	Octodon_degus
ENSMUSG00000030138	Bms1	90	66.879	ENSONIG00000007227	bms1	98	61.581	Oreochromis_niloticus
ENSMUSG00000030138	Bms1	99	74.071	ENSOANG00000000662	-	99	73.986	Ornithorhynchus_anatinus
ENSMUSG00000030138	Bms1	99	85.070	ENSOCUG00000005354	BMS1	99	84.992	Oryctolagus_cuniculus
ENSMUSG00000030138	Bms1	88	66.795	ENSORLG00000014655	bms1	98	61.538	Oryzias_latipes
ENSMUSG00000030138	Bms1	88	66.774	ENSORLG00020016246	bms1	98	61.111	Oryzias_latipes_hni
ENSMUSG00000030138	Bms1	88	66.828	ENSORLG00015014183	bms1	98	61.430	Oryzias_latipes_hsok
ENSMUSG00000030138	Bms1	88	68.182	ENSOMEG00000015042	bms1	98	62.205	Oryzias_melastigma
ENSMUSG00000030138	Bms1	99	85.116	ENSOGAG00000006511	BMS1	99	85.271	Otolemur_garnettii
ENSMUSG00000030138	Bms1	99	84.264	ENSOARG00000003900	BMS1	99	83.876	Ovis_aries
ENSMUSG00000030138	Bms1	99	81.430	ENSPPAG00000027837	BMS1	99	80.963	Pan_paniscus
ENSMUSG00000030138	Bms1	99	85.681	ENSPPRG00000001311	BMS1	99	85.214	Panthera_pardus
ENSMUSG00000030138	Bms1	99	83.891	ENSPTIG00000009652	BMS1	99	83.813	Panthera_tigris_altaica
ENSMUSG00000030138	Bms1	99	85.082	ENSPTRG00000002441	BMS1	99	84.837	Pan_troglodytes
ENSMUSG00000030138	Bms1	99	71.309	ENSPSIG00000006481	BMS1	98	72.755	Pelodiscus_sinensis
ENSMUSG00000030138	Bms1	100	82.919	ENSPEMG00000022467	Bms1	100	83.385	Peromyscus_maniculatus_bairdii
ENSMUSG00000030138	Bms1	95	91.275	ENSPCIG00000001339	BMS1	98	85.634	Phascolarctos_cinereus
ENSMUSG00000030138	Bms1	86	65.560	ENSPFOG00000015180	bms1	96	69.903	Poecilia_formosa
ENSMUSG00000030138	Bms1	85	66.396	ENSPMEG00000023176	bms1	93	61.974	Poecilia_mexicana
ENSMUSG00000030138	Bms1	79	72.616	ENSPREG00000002695	bms1	94	71.562	Poecilia_reticulata
ENSMUSG00000030138	Bms1	61	80.204	ENSPPYG00000002836	-	99	80.332	Pongo_abelii
ENSMUSG00000030138	Bms1	73	93.878	ENSPCAG00000014528	BMS1	73	93.878	Procavia_capensis
ENSMUSG00000030138	Bms1	95	79.839	ENSPCOG00000023834	-	99	80.387	Propithecus_coquereli
ENSMUSG00000030138	Bms1	99	82.412	ENSPVAG00000000725	BMS1	99	82.335	Pteropus_vampyrus
ENSMUSG00000030138	Bms1	97	60.757	ENSPNYG00000018866	bms1	94	59.135	Pundamilia_nyererei
ENSMUSG00000030138	Bms1	82	91.238	ENSRNOG00000006576	Bms1	100	91.238	Rattus_norvegicus
ENSMUSG00000030138	Bms1	99	83.904	ENSRROG00000040101	BMS1	99	83.670	Rhinopithecus_roxellana
ENSMUSG00000030138	Bms1	75	44.886	YPL217C	-	80	47.945	Saccharomyces_cerevisiae
ENSMUSG00000030138	Bms1	99	85.381	ENSSBOG00000035778	BMS1	99	85.770	Saimiri_boliviensis_boliviensis
ENSMUSG00000030138	Bms1	99	75.498	ENSSHAG00000005062	BMS1	99	75.576	Sarcophilus_harrisii
ENSMUSG00000030138	Bms1	99	59.819	ENSSFOG00015022313	bms1	99	60.398	Scleropages_formosus
ENSMUSG00000030138	Bms1	90	66.399	ENSSMAG00000019966	bms1	98	60.538	Scophthalmus_maximus
ENSMUSG00000030138	Bms1	88	67.476	ENSSDUG00000016875	bms1	98	60.728	Seriola_dumerili
ENSMUSG00000030138	Bms1	70	72.556	ENSSARG00000014407	BMS1	100	71.868	Sorex_araneus
ENSMUSG00000030138	Bms1	99	71.233	ENSSPUG00000014454	BMS1	99	71.926	Sphenodon_punctatus
ENSMUSG00000030138	Bms1	99	85.202	ENSSSCG00000010198	BMS1	99	85.202	Sus_scrofa
ENSMUSG00000030138	Bms1	99	71.330	ENSTGUG00000006302	-	99	71.177	Taeniopygia_guttata
ENSMUSG00000030138	Bms1	87	64.170	ENSTRUG00000008028	bms1	88	70.118	Takifugu_rubripes
ENSMUSG00000030138	Bms1	99	59.116	ENSTNIG00000006216	bms1	99	58.255	Tetraodon_nigroviridis
ENSMUSG00000030138	Bms1	60	90.169	ENSTBEG00000001673	-	64	88.562	Tupaia_belangeri
ENSMUSG00000030138	Bms1	99	84.926	ENSUAMG00000023996	BMS1	99	84.771	Ursus_americanus
ENSMUSG00000030138	Bms1	99	84.771	ENSUMAG00000016523	BMS1	99	84.615	Ursus_maritimus
ENSMUSG00000030138	Bms1	88	77.368	ENSVPAG00000007477	BMS1	94	91.577	Vicugna_pacos
ENSMUSG00000030138	Bms1	99	84.693	ENSVVUG00000021305	BMS1	99	84.848	Vulpes_vulpes
ENSMUSG00000030138	Bms1	98	63.887	ENSXETG00000008158	bms1	99	64.606	Xenopus_tropicalis
ENSMUSG00000030138	Bms1	86	66.253	ENSXCOG00000000506	bms1	93	75.696	Xiphophorus_couchianus
ENSMUSG00000030138	Bms1	85	65.747	ENSXMAG00000014236	bms1	98	62.162	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0005525	GTP binding	21873635.	IBA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0030686	90S preribosome	21873635.	IBA	Component
GO:0034511	U3 snoRNA binding	21873635.	IBA	Function