EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000030254 (Gene tree)
Gene ID: 58186
Gene Symbol: Rad18
Alias: 2810024C04Rik
Full Name: RAD18 E3 ubiquitin protein ligase
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 76837 bases
Position: chr6:112619850-112696686
Accession: 1890476
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000108805	SAP	PF02037.27	8.3e-12	1	1
ENSMUSP00000108807	SAP	PF02037.27	8.7e-12	1	1
ENSMUSP00000076341	SAP	PF02037.27	1e-11	1	1
ENSMUSP00000070619	SAP	PF02037.27	1e-11	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000156063	-	1496	-	ENSMUSP00000138558	309 (aa)	-	W4VSP9
ENSMUST00000135092	-	2004	-	-	- (aa)	-	-
ENSMUST00000077088	-	2577	-	ENSMUSP00000076341	509 (aa)	-	Q9QXK2
ENSMUST00000068487	-	2577	XM_006506434	ENSMUSP00000070619	556 (aa)	XP_006506497	E9Q392
ENSMUST00000113180	-	2136	XM_006506437	ENSMUSP00000108805	428 (aa)	XP_006506500	D3Z734
ENSMUST00000142079	-	724	-	ENSMUSP00000117582	241 (aa)	-	F6ZKR0
ENSMUST00000113182	-	2220	-	ENSMUSP00000108807	449 (aa)	-	D3Z733
ENSMUST00000132590	-	3535	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000030254's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000030254's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000030254	Rad18	100	77.346	ENSG00000070950	RAD18	100	90.110	Homo_sapiens
ENSMUSG00000030254	Rad18	98	42.059	ENSAPOG00000005260	rad18	83	41.568	Acanthochromis_polyacanthus
ENSMUSG00000030254	Rad18	100	77.401	ENSAMEG00000012375	RAD18	100	67.487	Ailuropoda_melanoleuca
ENSMUSG00000030254	Rad18	98	40.719	ENSACIG00000020655	rad18	95	40.000	Amphilophus_citrinellus
ENSMUSG00000030254	Rad18	69	63.462	ENSAOCG00000004507	rad18	61	58.716	Amphiprion_ocellaris
ENSMUSG00000030254	Rad18	98	43.582	ENSAPEG00000016837	rad18	92	42.926	Amphiprion_percula
ENSMUSG00000030254	Rad18	90	57.639	ENSAPLG00000003138	RAD18	77	54.472	Anas_platyrhynchos
ENSMUSG00000030254	Rad18	98	76.568	ENSANAG00000033360	RAD18	100	69.293	Aotus_nancymaae
ENSMUSG00000030254	Rad18	98	43.413	ENSACLG00000023506	rad18	84	44.332	Astatotilapia_calliptera
ENSMUSG00000030254	Rad18	96	45.806	ENSAMXG00000002534	rad18	89	41.602	Astyanax_mexicanus
ENSMUSG00000030254	Rad18	100	75.219	ENSBTAG00000012142	RAD18	100	77.616	Bos_taurus
ENSMUSG00000030254	Rad18	98	75.908	ENSCJAG00000040303	RAD18	100	68.600	Callithrix_jacchus
ENSMUSG00000030254	Rad18	98	74.917	ENSCAFG00000005548	RAD18	100	68.191	Canis_familiaris
ENSMUSG00000030254	Rad18	98	74.917	ENSCAFG00020009228	RAD18	100	68.191	Canis_lupus_dingo
ENSMUSG00000030254	Rad18	100	74.781	ENSCHIG00000007965	RAD18	99	76.901	Capra_hircus
ENSMUSG00000030254	Rad18	98	74.257	ENSTSYG00000012189	RAD18	100	66.998	Carlito_syrichta
ENSMUSG00000030254	Rad18	95	70.303	ENSCAPG00000000356	RAD18	100	70.909	Cavia_aperea
ENSMUSG00000030254	Rad18	98	75.578	ENSCPOG00000013890	RAD18	100	67.611	Cavia_porcellus
ENSMUSG00000030254	Rad18	98	76.238	ENSCCAG00000022920	RAD18	100	69.293	Cebus_capucinus
ENSMUSG00000030254	Rad18	98	75.248	ENSCATG00000039277	RAD18	100	68.600	Cercocebus_atys
ENSMUSG00000030254	Rad18	98	74.257	ENSCLAG00000003652	RAD18	100	68.209	Chinchilla_lanigera
ENSMUSG00000030254	Rad18	98	76.238	ENSCSAG00000010783	RAD18	100	68.713	Chlorocebus_sabaeus
ENSMUSG00000030254	Rad18	97	58.387	ENSCPBG00000014787	RAD18	99	49.520	Chrysemys_picta_bellii
ENSMUSG00000030254	Rad18	98	75.248	ENSCANG00000007308	RAD18	100	68.463	Colobus_angolensis_palliatus
ENSMUSG00000030254	Rad18	100	89.755	ENSCGRG00001018154	-	99	91.813	Cricetulus_griseus_chok1gshd
ENSMUSG00000030254	Rad18	98	86.928	ENSCGRG00001010209	-	100	78.068	Cricetulus_griseus_chok1gshd
ENSMUSG00000030254	Rad18	100	89.755	ENSCGRG00000007283	-	99	91.813	Cricetulus_griseus_crigri
ENSMUSG00000030254	Rad18	98	87.255	ENSCGRG00000019636	-	100	78.270	Cricetulus_griseus_crigri
ENSMUSG00000030254	Rad18	98	45.277	ENSCSEG00000002516	rad18	78	45.856	Cynoglossus_semilaevis
ENSMUSG00000030254	Rad18	98	46.541	ENSDARG00000027938	rad18	87	45.547	Danio_rerio
ENSMUSG00000030254	Rad18	98	78.878	ENSDNOG00000040055	RAD18	100	69.400	Dasypus_novemcinctus
ENSMUSG00000030254	Rad18	100	74.891	ENSDORG00000001099	Rad18	100	77.299	Dipodomys_ordii
ENSMUSG00000030254	Rad18	98	55.446	ENSETEG00000002268	RAD18	100	53.958	Echinops_telfairi
ENSMUSG00000030254	Rad18	98	80.528	ENSEASG00005013316	RAD18	94	71.457	Equus_asinus_asinus
ENSMUSG00000030254	Rad18	98	80.528	ENSECAG00000010746	RAD18	94	71.650	Equus_caballus
ENSMUSG00000030254	Rad18	98	66.337	ENSEEUG00000000236	-	73	68.634	Erinaceus_europaeus
ENSMUSG00000030254	Rad18	95	42.462	ENSELUG00000000733	rad18	95	36.273	Esox_lucius
ENSMUSG00000030254	Rad18	98	75.578	ENSFCAG00000025747	RAD18	100	68.862	Felis_catus
ENSMUSG00000030254	Rad18	95	57.860	ENSFALG00000013625	RAD18	87	54.476	Ficedula_albicollis
ENSMUSG00000030254	Rad18	98	75.987	ENSFDAG00000009907	RAD18	100	67.066	Fukomys_damarensis
ENSMUSG00000030254	Rad18	97	58.147	ENSGALG00000008368	RAD18	82	54.839	Gallus_gallus
ENSMUSG00000030254	Rad18	98	43.438	ENSGACG00000000920	rad18	80	44.000	Gasterosteus_aculeatus
ENSMUSG00000030254	Rad18	87	58.123	ENSGAGG00000005184	RAD18	82	54.381	Gopherus_agassizii
ENSMUSG00000030254	Rad18	98	75.908	ENSGGOG00000008391	RAD18	100	69.495	Gorilla_gorilla
ENSMUSG00000030254	Rad18	83	46.124	ENSHBUG00000013322	rad18	83	46.729	Haplochromis_burtoni
ENSMUSG00000030254	Rad18	100	79.288	ENSHGLG00000009196	-	99	79.288	Heterocephalus_glaber_female
ENSMUSG00000030254	Rad18	100	79.288	ENSHGLG00100017675	-	99	79.288	Heterocephalus_glaber_male
ENSMUSG00000030254	Rad18	96	43.279	ENSIPUG00000018681	rad18	84	40.470	Ictalurus_punctatus
ENSMUSG00000030254	Rad18	100	78.641	ENSSTOG00000004870	-	99	78.641	Ictidomys_tridecemlineatus
ENSMUSG00000030254	Rad18	100	79.823	ENSJJAG00000001484	Rad18	100	81.159	Jaculus_jaculus
ENSMUSG00000030254	Rad18	96	45.312	ENSKMAG00000020725	rad18	85	43.294	Kryptolebias_marmoratus
ENSMUSG00000030254	Rad18	92	53.156	ENSLACG00000018437	RAD18	96	52.475	Latimeria_chalumnae
ENSMUSG00000030254	Rad18	98	48.693	ENSLOCG00000010629	rad18	95	42.339	Lepisosteus_oculatus
ENSMUSG00000030254	Rad18	98	71.895	ENSLAFG00000004667	RAD18	100	65.432	Loxodonta_africana
ENSMUSG00000030254	Rad18	98	75.248	ENSMFAG00000028864	RAD18	100	68.600	Macaca_fascicularis
ENSMUSG00000030254	Rad18	100	76.699	ENSMMUG00000020013	RAD18	99	76.699	Macaca_mulatta
ENSMUSG00000030254	Rad18	98	75.248	ENSMNEG00000013464	RAD18	100	68.600	Macaca_nemestrina
ENSMUSG00000030254	Rad18	98	75.578	ENSMLEG00000014306	RAD18	100	68.800	Mandrillus_leucophaeus
ENSMUSG00000030254	Rad18	86	38.158	ENSMAMG00000023936	rad18	61	57.746	Mastacembelus_armatus
ENSMUSG00000030254	Rad18	98	43.114	ENSMZEG00005010577	rad18	73	44.081	Maylandia_zebra
ENSMUSG00000030254	Rad18	90	58.099	ENSMGAG00000010131	RAD18	79	53.826	Meleagris_gallopavo
ENSMUSG00000030254	Rad18	100	88.641	ENSMAUG00000020642	Rad18	100	91.014	Mesocricetus_auratus
ENSMUSG00000030254	Rad18	94	75.258	ENSMICG00000013536	RAD18	99	68.712	Microcebus_murinus
ENSMUSG00000030254	Rad18	100	87.143	ENSMOCG00000009114	Rad18	99	88.889	Microtus_ochrogaster
ENSMUSG00000030254	Rad18	100	41.860	ENSMMOG00000021793	rad18	98	42.632	Mola_mola
ENSMUSG00000030254	Rad18	98	64.169	ENSMODG00000004679	RAD18	99	50.532	Monodelphis_domestica
ENSMUSG00000030254	Rad18	100	94.603	MGP_CAROLIEiJ_G0028712	Rad18	100	94.603	Mus_caroli
ENSMUSG00000030254	Rad18	100	96.117	MGP_PahariEiJ_G0022463	Rad18	100	96.117	Mus_pahari
ENSMUSG00000030254	Rad18	100	99.109	MGP_SPRETEiJ_G0029740	Rad18	100	99.109	Mus_spretus
ENSMUSG00000030254	Rad18	98	77.558	ENSMPUG00000017063	RAD18	100	70.060	Mustela_putorius_furo
ENSMUSG00000030254	Rad18	98	73.290	ENSMLUG00000016494	RAD18	100	66.275	Myotis_lucifugus
ENSMUSG00000030254	Rad18	100	83.814	ENSNGAG00000012464	Rad18	100	85.260	Nannospalax_galili
ENSMUSG00000030254	Rad18	98	39.521	ENSNBRG00000004794	rad18	97	41.067	Neolamprologus_brichardi
ENSMUSG00000030254	Rad18	98	76.898	ENSNLEG00000003789	RAD18	100	69.838	Nomascus_leucogenys
ENSMUSG00000030254	Rad18	81	61.628	ENSMEUG00000003444	-	82	51.594	Notamacropus_eugenii
ENSMUSG00000030254	Rad18	98	71.947	ENSOPRG00000013856	RAD18	100	63.030	Ochotona_princeps
ENSMUSG00000030254	Rad18	96	78.114	ENSODEG00000018158	RAD18	97	78.114	Octodon_degus
ENSMUSG00000030254	Rad18	98	44.272	ENSONIG00000018979	rad18	90	42.718	Oreochromis_niloticus
ENSMUSG00000030254	Rad18	98	74.587	ENSOCUG00000000013	RAD18	100	65.669	Oryctolagus_cuniculus
ENSMUSG00000030254	Rad18	96	40.683	ENSORLG00000029026	rad18	95	41.598	Oryzias_latipes
ENSMUSG00000030254	Rad18	98	77.124	ENSOGAG00000001410	RAD18	100	69.539	Otolemur_garnettii
ENSMUSG00000030254	Rad18	98	73.856	ENSOARG00000007445	RAD18	100	67.391	Ovis_aries
ENSMUSG00000030254	Rad18	98	76.568	ENSPPAG00000035797	RAD18	100	69.697	Pan_paniscus
ENSMUSG00000030254	Rad18	98	75.248	ENSPPRG00000004021	RAD18	100	68.663	Panthera_pardus
ENSMUSG00000030254	Rad18	98	75.248	ENSPTIG00000008602	RAD18	100	68.663	Panthera_tigris_altaica
ENSMUSG00000030254	Rad18	98	76.568	ENSPTRG00000014583	RAD18	100	69.697	Pan_troglodytes
ENSMUSG00000030254	Rad18	98	74.917	ENSPANG00000008855	RAD18	100	68.400	Papio_anubis
ENSMUSG00000030254	Rad18	97	58.632	ENSPSIG00000006928	RAD18	99	46.250	Pelodiscus_sinensis
ENSMUSG00000030254	Rad18	98	44.872	ENSPMGG00000013294	rad18	95	41.549	Periophthalmus_magnuspinnatus
ENSMUSG00000030254	Rad18	98	89.769	ENSPEMG00000022129	Rad18	99	90.936	Peromyscus_maniculatus_bairdii
ENSMUSG00000030254	Rad18	96	64.379	ENSPCIG00000024872	RAD18	78	66.848	Phascolarctos_cinereus
ENSMUSG00000030254	Rad18	96	41.590	ENSPFOG00000002722	rad18	96	43.478	Poecilia_formosa
ENSMUSG00000030254	Rad18	98	76.898	ENSPPYG00000013688	RAD18	100	69.495	Pongo_abelii
ENSMUSG00000030254	Rad18	96	62.081	ENSPCAG00000008229	RAD18	100	54.803	Procavia_capensis
ENSMUSG00000030254	Rad18	98	73.927	ENSPVAG00000012220	RAD18	100	68.474	Pteropus_vampyrus
ENSMUSG00000030254	Rad18	98	44.681	ENSPNYG00000006815	rad18	78	45.408	Pundamilia_nyererei
ENSMUSG00000030254	Rad18	98	41.298	ENSPNAG00000016082	rad18	85	40.494	Pygocentrus_nattereri
ENSMUSG00000030254	Rad18	98	92.739	ENSRNOG00000005907	Rad18	100	84.413	Rattus_norvegicus
ENSMUSG00000030254	Rad18	98	73.927	ENSRBIG00000044173	RAD18	100	67.465	Rhinopithecus_bieti
ENSMUSG00000030254	Rad18	98	75.908	ENSRROG00000043948	RAD18	100	70.082	Rhinopithecus_roxellana
ENSMUSG00000030254	Rad18	98	76.568	ENSSBOG00000008434	-	100	69.293	Saimiri_boliviensis_boliviensis
ENSMUSG00000030254	Rad18	95	57.047	ENSSHAG00000012472	-	97	56.599	Sarcophilus_harrisii
ENSMUSG00000030254	Rad18	98	45.570	ENSSFOG00015019264	rad18	76	46.092	Scleropages_formosus
ENSMUSG00000030254	Rad18	95	59.459	ENSSPUG00000017486	RAD18	97	59.459	Sphenodon_punctatus
ENSMUSG00000030254	Rad18	98	42.687	ENSSPAG00000007165	rad18	79	43.532	Stegastes_partitus
ENSMUSG00000030254	Rad18	98	75.329	ENSSSCG00000026158	RAD18	100	68.127	Sus_scrofa
ENSMUSG00000030254	Rad18	92	53.952	ENSTGUG00000010405	RAD18	85	52.618	Taeniopygia_guttata
ENSMUSG00000030254	Rad18	95	42.812	ENSTRUG00000003517	rad18	97	43.503	Takifugu_rubripes
ENSMUSG00000030254	Rad18	98	45.928	ENSTNIG00000014625	rad18	100	45.730	Tetraodon_nigroviridis
ENSMUSG00000030254	Rad18	98	77.888	ENSTTRG00000005034	RAD18	100	70.080	Tursiops_truncatus
ENSMUSG00000030254	Rad18	91	60.000	ENSUAMG00000009763	-	84	59.364	Ursus_americanus
ENSMUSG00000030254	Rad18	98	76.898	ENSUMAG00000019279	RAD18	100	69.461	Ursus_maritimus
ENSMUSG00000030254	Rad18	96	77.365	ENSVPAG00000002063	RAD18	100	63.696	Vicugna_pacos
ENSMUSG00000030254	Rad18	98	74.917	ENSVVUG00000025318	RAD18	100	75.758	Vulpes_vulpes
ENSMUSG00000030254	Rad18	95	52.733	ENSXETG00000033878	RAD18	99	54.026	Xenopus_tropicalis
ENSMUSG00000030254	Rad18	96	37.048	ENSXCOG00000020018	rad18	94	39.142	Xiphophorus_couchianus
ENSMUSG00000030254	Rad18	96	37.349	ENSXMAG00000001516	rad18	94	39.410	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000403	Y-form DNA binding	-	ISO	Function
GO:0000785	chromatin	15657431.	IDA	Component
GO:0001741	XY body	15383616.	IDA	Component
GO:0003677	DNA binding	-	IEA	Function
GO:0003697	single-stranded DNA binding	-	IEA	Function
GO:0005515	protein binding	12509447.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	11013078.19068231.	IDA	Component
GO:0005634	nucleus	25023518.	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005657	replication fork	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005813	centrosome	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006301	postreplication repair	21873635.	IBA	Process
GO:0006513	protein monoubiquitination	21873635.	IBA	Process
GO:0006974	cellular response to DNA damage stimulus	12509447.	IMP	Process
GO:0006974	cellular response to DNA damage stimulus	25023518.	ISO	Process
GO:0007283	spermatogenesis	19068231.	IMP	Process
GO:0009411	response to UV	21873635.	IBA	Process
GO:0009411	response to UV	12509447.	IMP	Process
GO:0016604	nuclear body	-	ISO	Component
GO:0016740	transferase activity	-	IEA	Function
GO:0031593	polyubiquitin modification-dependent protein binding	-	ISO	Function
GO:0031625	ubiquitin protein ligase binding	-	ISO	Function
GO:0035861	site of double-strand break	-	ISO	Component
GO:0042405	nuclear inclusion body	-	ISO	Component
GO:0042802	identical protein binding	25023518.	ISO	Function
GO:0043142	single-stranded DNA-dependent ATPase activity	21873635.	IBA	Function
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0045910	negative regulation of DNA recombination	12509447.	IMP	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0051865	protein autoubiquitination	25023518.	ISO	Process
GO:0051984	positive regulation of chromosome segregation	-	ISO	Process
GO:0060548	negative regulation of cell death	-	ISO	Process
GO:0061630	ubiquitin protein ligase activity	21873635.	IBA	Function
GO:0097505	Rad6-Rad18 complex	21873635.	IBA	Component