EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000030322 (Gene tree)
Gene ID: 17193
Gene Symbol: Mbd4
Alias: Med1
Full Name: methyl-CpG binding domain protein 4
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 12675 bases
Position: chr6:115840697-115853371
Accession: 1333850
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000145433	MBD	PF01429.19	1.3e-19	1	1
ENSMUSP00000032469	MBD	PF01429.19	2e-19	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000032469	-	3614	XM_006505679	ENSMUSP00000032469	554 (aa)	XP_006505742	A0A0R4J0A8
ENSMUST00000122816	-	2415	-	ENSMUSP00000145433	386 (aa)	-	A0A0N4SWA0
ENSMUST00000147282	-	2924	-	ENSMUSP00000125619	365 (aa)	-	Q3TU27
ENSMUST00000203643	-	669	-	ENSMUSP00000144930	175 (aa)	-	A0A0N4SV30
ENSMUST00000133830	-	2064	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000030322's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000030322's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000030322	Mbd4	100	66.261	ENSG00000129071	MBD4	98	92.473	Homo_sapiens
ENSMUSG00000030322	Mbd4	87	41.782	ENSAPOG00000021668	mbd4	95	42.449	Acanthochromis_polyacanthus
ENSMUSG00000030322	Mbd4	100	65.565	ENSAMEG00000004562	MBD4	99	65.565	Ailuropoda_melanoleuca
ENSMUSG00000030322	Mbd4	87	43.117	ENSAOCG00000001157	mbd4	95	43.320	Amphiprion_ocellaris
ENSMUSG00000030322	Mbd4	87	43.800	ENSAPEG00000016131	mbd4	95	43.373	Amphiprion_percula
ENSMUSG00000030322	Mbd4	87	45.090	ENSATEG00000014594	MBD4	86	45.090	Anabas_testudineus
ENSMUSG00000030322	Mbd4	100	61.538	ENSBTAG00000021645	MBD4	100	61.538	Bos_taurus
ENSMUSG00000030322	Mbd4	100	65.913	ENSCJAG00000017293	MBD4	99	65.913	Callithrix_jacchus
ENSMUSG00000030322	Mbd4	100	66.031	ENSCAFG00000004867	MBD4	99	66.031	Canis_familiaris
ENSMUSG00000030322	Mbd4	100	66.031	ENSCAFG00020007082	MBD4	99	66.031	Canis_lupus_dingo
ENSMUSG00000030322	Mbd4	100	62.587	ENSCHIG00000009760	MBD4	100	62.587	Capra_hircus
ENSMUSG00000030322	Mbd4	100	65.739	ENSCCAG00000029796	MBD4	99	65.739	Cebus_capucinus
ENSMUSG00000030322	Mbd4	100	66.084	ENSCATG00000035211	MBD4	99	66.084	Cercocebus_atys
ENSMUSG00000030322	Mbd4	99	65.062	ENSCLAG00000008974	MBD4	99	65.062	Chinchilla_lanigera
ENSMUSG00000030322	Mbd4	100	66.492	ENSCSAG00000009037	MBD4	99	66.492	Chlorocebus_sabaeus
ENSMUSG00000030322	Mbd4	96	47.469	ENSCPBG00000014704	MBD4	99	47.469	Chrysemys_picta_bellii
ENSMUSG00000030322	Mbd4	100	66.434	ENSCANG00000007120	MBD4	99	66.434	Colobus_angolensis_palliatus
ENSMUSG00000030322	Mbd4	100	75.265	ENSCGRG00001003507	Mbd4	100	76.148	Cricetulus_griseus_chok1gshd
ENSMUSG00000030322	Mbd4	100	75.265	ENSCGRG00000010974	Mbd4	100	76.148	Cricetulus_griseus_crigri
ENSMUSG00000030322	Mbd4	100	64.460	ENSDNOG00000049619	MBD4	100	64.460	Dasypus_novemcinctus
ENSMUSG00000030322	Mbd4	91	49.107	ENSDORG00000000902	-	98	58.386	Dipodomys_ordii
ENSMUSG00000030322	Mbd4	100	66.608	ENSEASG00005014800	MBD4	100	66.608	Equus_asinus_asinus
ENSMUSG00000030322	Mbd4	100	66.608	ENSECAG00000022106	MBD4	100	66.608	Equus_caballus
ENSMUSG00000030322	Mbd4	90	61.868	ENSEEUG00000011459	MBD4	95	61.868	Erinaceus_europaeus
ENSMUSG00000030322	Mbd4	100	66.435	ENSFCAG00000000083	MBD4	99	66.435	Felis_catus
ENSMUSG00000030322	Mbd4	83	45.567	ENSFALG00000013663	MBD4	99	45.600	Ficedula_albicollis
ENSMUSG00000030322	Mbd4	87	41.393	ENSGMOG00000013830	mbd4	100	41.393	Gadus_morhua
ENSMUSG00000030322	Mbd4	93	47.568	ENSGAGG00000018644	MBD4	96	47.568	Gopherus_agassizii
ENSMUSG00000030322	Mbd4	100	65.625	ENSGGOG00000010698	MBD4	99	65.625	Gorilla_gorilla
ENSMUSG00000030322	Mbd4	100	65.079	ENSHGLG00000009034	MBD4	100	65.079	Heterocephalus_glaber_female
ENSMUSG00000030322	Mbd4	100	65.079	ENSHGLG00100000135	MBD4	100	65.079	Heterocephalus_glaber_male
ENSMUSG00000030322	Mbd4	100	63.176	ENSSTOG00000020663	MBD4	100	63.176	Ictidomys_tridecemlineatus
ENSMUSG00000030322	Mbd4	87	45.898	ENSLOCG00000013054	MBD4	98	46.575	Lepisosteus_oculatus
ENSMUSG00000030322	Mbd4	99	64.187	ENSLAFG00000010609	MBD4	99	64.187	Loxodonta_africana
ENSMUSG00000030322	Mbd4	99	66.550	ENSMFAG00000002266	MBD4	99	66.550	Macaca_fascicularis
ENSMUSG00000030322	Mbd4	99	66.376	ENSMMUG00000012723	MBD4	99	66.376	Macaca_mulatta
ENSMUSG00000030322	Mbd4	95	64.899	ENSMNEG00000029752	MBD4	99	64.899	Macaca_nemestrina
ENSMUSG00000030322	Mbd4	100	65.734	ENSMLEG00000024859	MBD4	99	65.734	Mandrillus_leucophaeus
ENSMUSG00000030322	Mbd4	58	30.415	ENSMAMG00000024084	-	53	30.415	Mastacembelus_armatus
ENSMUSG00000030322	Mbd4	100	66.259	ENSMICG00000008022	MBD4	99	66.259	Microcebus_murinus
ENSMUSG00000030322	Mbd4	100	63.038	ENSMOCG00000002466	-	100	63.038	Microtus_ochrogaster
ENSMUSG00000030322	Mbd4	88	56.832	ENSMODG00000006399	-	99	56.832	Monodelphis_domestica
ENSMUSG00000030322	Mbd4	100	95.035	MGP_CAROLIEiJ_G0028760	Mbd4	100	95.035	Mus_caroli
ENSMUSG00000030322	Mbd4	100	89.065	MGP_PahariEiJ_G0022511	-	100	89.065	Mus_pahari
ENSMUSG00000030322	Mbd4	100	96.931	MGP_SPRETEiJ_G0029788	Mbd4	100	96.931	Mus_spretus
ENSMUSG00000030322	Mbd4	100	64.921	ENSMPUG00000017195	MBD4	99	64.921	Mustela_putorius_furo
ENSMUSG00000030322	Mbd4	94	69.030	ENSMLUG00000014766	MBD4	98	69.030	Myotis_lucifugus
ENSMUSG00000030322	Mbd4	100	66.376	ENSNLEG00000005337	MBD4	99	66.376	Nomascus_leucogenys
ENSMUSG00000030322	Mbd4	100	59.720	ENSOPRG00000000473	MBD4	99	59.720	Ochotona_princeps
ENSMUSG00000030322	Mbd4	87	44.841	ENSONIG00000017212	mbd4	100	44.841	Oreochromis_niloticus
ENSMUSG00000030322	Mbd4	82	38.889	ENSOANG00000004589	-	96	43.349	Ornithorhynchus_anatinus
ENSMUSG00000030322	Mbd4	100	58.681	ENSOCUG00000013006	MBD4	99	58.681	Oryctolagus_cuniculus
ENSMUSG00000030322	Mbd4	87	44.033	ENSOMEG00000008819	mbd4	90	44.033	Oryzias_melastigma
ENSMUSG00000030322	Mbd4	100	63.492	ENSOGAG00000010236	MBD4	100	63.492	Otolemur_garnettii
ENSMUSG00000030322	Mbd4	100	62.937	ENSOARG00000014699	MBD4	100	62.937	Ovis_aries
ENSMUSG00000030322	Mbd4	100	65.505	ENSPPAG00000036528	MBD4	99	65.505	Pan_paniscus
ENSMUSG00000030322	Mbd4	100	65.854	ENSPPRG00000016480	MBD4	99	65.854	Panthera_pardus
ENSMUSG00000030322	Mbd4	100	65.739	ENSPTRG00000015377	MBD4	99	65.739	Pan_troglodytes
ENSMUSG00000030322	Mbd4	100	66.492	ENSPANG00000015047	MBD4	99	66.492	Papio_anubis
ENSMUSG00000030322	Mbd4	95	48.696	ENSPSIG00000007892	MBD4	96	48.696	Pelodiscus_sinensis
ENSMUSG00000030322	Mbd4	94	72.381	ENSPEMG00000006226	Mbd4	99	72.814	Peromyscus_maniculatus_bairdii
ENSMUSG00000030322	Mbd4	91	53.232	ENSPCIG00000002276	-	98	53.232	Phascolarctos_cinereus
ENSMUSG00000030322	Mbd4	87	44.040	ENSPFOG00000014471	mbd4	98	44.355	Poecilia_formosa
ENSMUSG00000030322	Mbd4	100	65.620	ENSPPYG00000013417	MBD4	99	65.620	Pongo_abelii
ENSMUSG00000030322	Mbd4	95	60.000	ENSPCAG00000012915	MBD4	99	60.182	Procavia_capensis
ENSMUSG00000030322	Mbd4	100	67.944	ENSPVAG00000005238	MBD4	99	67.944	Pteropus_vampyrus
ENSMUSG00000030322	Mbd4	100	81.898	ENSRNOG00000010919	Mbd4	100	81.898	Rattus_norvegicus
ENSMUSG00000030322	Mbd4	100	66.084	ENSRBIG00000027722	MBD4	99	66.084	Rhinopithecus_bieti
ENSMUSG00000030322	Mbd4	100	65.909	ENSRROG00000029136	MBD4	99	65.909	Rhinopithecus_roxellana
ENSMUSG00000030322	Mbd4	100	66.087	ENSSBOG00000016810	MBD4	99	66.087	Saimiri_boliviensis_boliviensis
ENSMUSG00000030322	Mbd4	94	54.512	ENSSHAG00000012953	MBD4	94	54.779	Sarcophilus_harrisii
ENSMUSG00000030322	Mbd4	54	74.444	ENSSFOG00015016292	mbd4	61	74.444	Scleropages_formosus
ENSMUSG00000030322	Mbd4	87	44.625	ENSSDUG00000001365	mbd4	93	44.625	Seriola_dumerili
ENSMUSG00000030322	Mbd4	77	40.367	ENSSLDG00000010295	MBD4	80	40.367	Seriola_lalandi_dorsalis
ENSMUSG00000030322	Mbd4	82	57.849	ENSSARG00000004496	-	80	57.849	Sorex_araneus
ENSMUSG00000030322	Mbd4	87	47.953	ENSSPUG00000017344	MBD4	91	47.953	Sphenodon_punctatus
ENSMUSG00000030322	Mbd4	100	65.972	ENSSSCG00000033303	MBD4	100	65.972	Sus_scrofa
ENSMUSG00000030322	Mbd4	87	43.852	ENSTRUG00000010124	mbd4	95	43.852	Takifugu_rubripes
ENSMUSG00000030322	Mbd4	87	41.903	ENSTNIG00000017927	mbd4	100	41.903	Tetraodon_nigroviridis
ENSMUSG00000030322	Mbd4	86	63.303	ENSTBEG00000003041	-	85	63.303	Tupaia_belangeri
ENSMUSG00000030322	Mbd4	96	67.399	ENSTTRG00000011265	MBD4	98	67.399	Tursiops_truncatus
ENSMUSG00000030322	Mbd4	88	69.461	ENSUAMG00000000814	MBD4	99	69.461	Ursus_americanus
ENSMUSG00000030322	Mbd4	100	66.087	ENSUMAG00000017542	MBD4	100	66.087	Ursus_maritimus
ENSMUSG00000030322	Mbd4	65	66.026	ENSVPAG00000004040	-	66	66.026	Vicugna_pacos
ENSMUSG00000030322	Mbd4	100	65.858	ENSVVUG00000014222	MBD4	99	65.858	Vulpes_vulpes
ENSMUSG00000030322	Mbd4	87	45.885	ENSXETG00000026622	mbd4	89	45.885	Xenopus_tropicalis
ENSMUSG00000030322	Mbd4	87	43.426	ENSXMAG00000021129	mbd4	98	43.366	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000785	chromatin	21873635.	IBA	Component
GO:0000785	chromatin	9774669.	IDA	Component
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0003677	DNA binding	9774669.	IDA	Function
GO:0003824	catalytic activity	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	9774669.17546630.	IDA	Component
GO:0005737	cytoplasm	17546630.	IDA	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006306	DNA methylation	11336497.	TAS	Process
GO:0006974	cellular response to DNA damage stimulus	14562041.	IMP	Process
GO:0007095	mitotic G2 DNA damage checkpoint	14614141.	IMP	Process
GO:0008263	pyrimidine-specific mismatch base pair DNA N-glycosylase activity	-	ISO	Function
GO:0008630	intrinsic apoptotic signaling pathway in response to DNA damage	14562041.	IMP	Process
GO:0009314	response to radiation	21873635.	IBA	Process
GO:0009314	response to radiation	14562041.	IMP	Process
GO:0016607	nuclear speck	-	ISO	Component
GO:0016787	hydrolase activity	-	IEA	Function