EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000030512 (Gene tree)
Gene ID: 68981
Gene Symbol: Snrpa1
Alias: 1500015N06Rik|U2 snRNP-A'
Full Name: small nuclear ribonucleoprotein polypeptide A'
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 15585
Position: chr7: 66059003-66074587
Accession: 1916231
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000032723	-	955	-	ENSMUSP00000032723	154 (aa)	-	G5E883
ENSMUST00000153609	-	1248	-	ENSMUSP00000117947	255 (aa)	-	P57784
ENSMUST00000139082	-	2026	-	-	- (aa)	-	-
ENSMUST00000206150	-	654	-	-	- (aa)	-	-
ENSMUST00000206166	-	489	-	-	- (aa)	-	-
ENSMUST00000147702	-	462	-	-	- (aa)	-	-
ENSMUST00000138271	-	262	-	-	- (aa)	-	-
ENSMUST00000123157	-	664	-	-	- (aa)	-	-
ENSMUST00000206409	-	459	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000030512's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000030512's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000030512	Snrpa1	99	54.605	WBGene00003390	mog-2	92	49.356	Caenorhabditis_elegans
ENSMUSG00000030512	Snrpa1	100	100.000	ENSG00000131876	SNRPA1	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005681	spliceosomal complex	-	ISO	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0007283	spermatogenesis	-	ISO	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016604	nuclear body	-	ISO	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0030620	U2 snRNA binding	21873635.	IBA	Function
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component
GO:0071007	U2-type catalytic step 2 spliceosome	-	ISO	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component