EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000030516 (Gene tree)
Gene ID: 21872
Gene Symbol: Tjp1
Alias: ZO-1|ZO1
Full Name: tight junction protein 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 231617
Position: chr7: 65296165-65527781
Accession: 98759
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000206438	-	451	-	-	- (aa)	-	-
ENSMUST00000032729	-	6102	XM_006540783	ENSMUSP00000032729	1685 (aa)	XP_006540846	B9EHJ3
ENSMUST00000144961	-	385	-	-	- (aa)	-	-
ENSMUST00000206612	-	5938	-	ENSMUSP00000146149	1128 (aa)	-	A0A0U1RPW2
ENSMUST00000102592	-	7049	XM_006540778	ENSMUSP00000099652	1745 (aa)	XP_006540841	P39447
ENSMUST00000132036	-	699	-	-	- (aa)	-	-
ENSMUST00000206228	-	551	-	ENSMUSP00000145910	171 (aa)	-	A0A0U1RPB2

Gene Model

Click here to download ENSMUSG00000030516's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04520	Adherens junction	KEGG
mmu04530	Tight junction	KEGG
mmu04540	Gap junction	KEGG
mmu05132	Salmonella infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000030516's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000030516	Tjp1	100	98.246	ENSG00000104067	TJP1	100	92.064	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001825	blastocyst formation	18423437.	IMP	Process
GO:0005515	protein binding	10601346.16045494.16188940.16944923.21282606.24413171.24715457.26609154.	IPI	Function
GO:0005516	calmodulin binding	-	IEA	Function
GO:0005634	nucleus	14685273.16427635.	IDA	Component
GO:0005737	cytoplasm	16427635.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	12060405.12507281.14699011.15084279.15775979.17122142.	IDA	Component
GO:0005886	plasma membrane	18337546.	ISO	Component
GO:0005911	cell-cell junction	18423437.20089884.20473291.22512338.23824537.24339795.26609154.	IDA	Component
GO:0005912	adherens junction	12203721.	IDA	Component
GO:0005913	cell-cell adherens junction	11731229.15728677.17666436.	IDA	Component
GO:0005921	gap junction	-	ISO	Component
GO:0005923	bicellular tight junction	10395790.11025210.11689568.11706048.12673830.12832289.14622136.14685273.15775979.15950600.16105026.16199027.16275913.16364283.16520537.17000770.17130295.17138661.17397395.17666436.18308723.19129494.19590046.20080746.20551175.21285373.22946046.23979167.25512490.	IDA	Component
GO:0005923	bicellular tight junction	16427635.	ISO	Component
GO:0007605	sensory perception of sound	23979167.	IMP	Process
GO:0008022	protein C-terminus binding	-	ISO	Function
GO:0009986	cell surface	12507281.	ISO	Component
GO:0014704	intercalated disc	18603586.	IDA	Component
GO:0016020	membrane	15788452.	IDA	Component
GO:0016323	basolateral plasma membrane	16427635.	ISO	Component
GO:0016324	apical plasma membrane	21947081.	IDA	Component
GO:0016327	apicolateral plasma membrane	16520537.	IDA	Component
GO:0019904	protein domain specific binding	17666436.	IPI	Function
GO:0030054	cell junction	16427635.21411630.21884682.	IDA	Component
GO:0030054	cell junction	-	ISO	Component
GO:0032991	protein-containing complex	15492000.	IMP	Component
GO:0043296	apical junction complex	16427635.	ISO	Component
GO:0045177	apical part of cell	23434913.23610556.23863479.24191021.	IDA	Component
GO:0045177	apical part of cell	-	ISO	Component
GO:0046581	intercellular canaliculus	12068294.	IDA	Component
GO:0070160	tight junction	24889144.	IDA	Component
GO:0071253	connexin binding	14699011.15492000.	IPI	Function
GO:0090557	establishment of endothelial intestinal barrier	-	ISO	Process