EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000139178	-	1085	-	-	- (aa)	-	-
ENSMUST00000107384	-	1745	-	ENSMUSP00000103007	452 (aa)	-	P54071
ENSMUST00000125542	-	743	-	ENSMUSP00000145852	150 (aa)	-	A0A0U1RP68
ENSMUST00000206714	-	392	-	ENSMUSP00000146084	90 (aa)	-	A0A0U1RPR1
ENSMUST00000134328	-	1790	-	ENSMUSP00000118184	294 (aa)	-	D6RIL6
ENSMUST00000156761	-	485	-	-	- (aa)	-	-
ENSMUST00000134070	-	891	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu00020	Citrate cycle (TCA cycle)	KEGG
mmu00480	Glutathione metabolism	KEGG
mmu01100	Metabolic pathways	KEGG
mmu01200	Carbon metabolism	KEGG
mmu01210	2-Oxocarboxylic acid metabolism	KEGG
mmu01230	Biosynthesis of amino acids	KEGG
mmu04146	Peroxisome	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000030541	Idh2	100	64.000	FBgn0001248	Idh	97	65.594	Drosophila_melanogaster
ENSMUSG00000030541	Idh2	100	68.874	ENSMUSG00000025950	Idh1	94	79.104	Mus_musculus
ENSMUSG00000030541	Idh2	100	62.500	YDL066W		96	62.590	Saccharomyces_cerevisiae
ENSMUSG00000030541	Idh2	100	64.901	YNL009W		96	62.347	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000287	magnesium ion binding	-	IEA	Function
GO:0004448	isocitrate dehydrogenase activity	18275837.	IDA	Function
GO:0004450	isocitrate dehydrogenase (NADP+) activity	21873635.	IBA	Function
GO:0004450	isocitrate dehydrogenase (NADP+) activity	7323947.8867815.	IDA	Function
GO:0004450	isocitrate dehydrogenase (NADP+) activity	-	ISO	Function
GO:0005739	mitochondrion	14651853.18614015.	HDA	Component
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005743	mitochondrial inner membrane	12865426.	HDA	Component
GO:0005777	peroxisome	18275837.	IDA	Component
GO:0005829	cytosol	18275837.	IDA	Component
GO:0006097	glyoxylate cycle	-	IEA	Process
GO:0006099	tricarboxylic acid cycle	-	IEA	Process
GO:0006102	isocitrate metabolic process	21873635.	IBA	Process
GO:0006739	NADP metabolic process	21873635.	IBA	Process
GO:0006741	NADP biosynthetic process	-	ISO	Process
GO:0016491	oxidoreductase activity	-	IEA	Function
GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	-	IEA	Function
GO:0042803	protein homodimerization activity	21873635.	IBA	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0051287	NAD binding	-	IEA	Function
GO:0055114	oxidation-reduction process	-	IEA	Process
GO:0060253	negative regulation of glial cell proliferation	-	ISO	Process
GO:1903976	negative regulation of glial cell migration	-	ISO	Process
GO:1904465	negative regulation of matrix metallopeptidase secretion	-	ISO	Process