EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000030738 (Gene tree)
Gene ID: 56347
Gene Symbol: Eif3c
Alias: 110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|Xs|Xsl
Full Name: eukaryotic translation initiation factor 3%2C subunit C
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 19957 bases
Position: chr7:126546455-126566411
Accession: 1926966
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000032992	eIF-3c_N	PF05470.12	2e-268	1	1
ENSMUSP00000138023	eIF-3c_N	PF05470.12	8.9e-70	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000032992	-	3383	-	ENSMUSP00000032992	911 (aa)	-	Q8R1B4
ENSMUST00000205949	-	480	-	ENSMUSP00000146083	66 (aa)	-	A0A0U1RPR0
ENSMUST00000180459	-	926	-	ENSMUSP00000138023	249 (aa)	-	M0QWV3

Gene Model

Click here to download ENSMUSG00000030738's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000030738's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000030738	Eif3c	100	96.714	ENSG00000184110	EIF3C	100	100.000	Homo_sapiens
ENSMUSG00000030738	Eif3c	100	96.608	ENSG00000205609	EIF3CL	100	96.608	Homo_sapiens
ENSMUSG00000030738	Eif3c	99	75.599	ENSAPOG00000024092	eif3c	92	83.524	Acanthochromis_polyacanthus
ENSMUSG00000030738	Eif3c	100	97.262	ENSAMEG00000015454	-	100	97.262	Ailuropoda_melanoleuca
ENSMUSG00000030738	Eif3c	99	72.878	ENSACIG00000015082	eif3c	93	83.223	Amphilophus_citrinellus
ENSMUSG00000030738	Eif3c	67	60.355	ENSAOCG00000024752	-	55	66.234	Amphiprion_ocellaris
ENSMUSG00000030738	Eif3c	94	83.333	ENSAOCG00000021466	eif3c	94	83.333	Amphiprion_ocellaris
ENSMUSG00000030738	Eif3c	61	64.286	ENSAPEG00000023503	-	62	66.883	Amphiprion_percula
ENSMUSG00000030738	Eif3c	94	83.333	ENSAPEG00000010521	eif3c	94	83.333	Amphiprion_percula
ENSMUSG00000030738	Eif3c	99	75.190	ENSATEG00000019001	eif3c	98	75.626	Anabas_testudineus
ENSMUSG00000030738	Eif3c	100	85.371	ENSACAG00000005937	-	100	85.590	Anolis_carolinensis
ENSMUSG00000030738	Eif3c	100	96.605	ENSANAG00000020640	-	100	96.605	Aotus_nancymaae
ENSMUSG00000030738	Eif3c	84	80.130	ENSACLG00000009322	eif3c	92	80.130	Astatotilapia_calliptera
ENSMUSG00000030738	Eif3c	84	82.975	ENSACLG00000009347	eif3c	98	82.975	Astatotilapia_calliptera
ENSMUSG00000030738	Eif3c	99	75.604	ENSAMXG00000020949	eif3c	98	75.519	Astyanax_mexicanus
ENSMUSG00000030738	Eif3c	100	95.833	ENSBTAG00000006543	EIF3CL	100	95.833	Bos_taurus
ENSMUSG00000030738	Eif3c	99	42.134	WBGene00001226	eif-3.C	97	42.626	Caenorhabditis_elegans
ENSMUSG00000030738	Eif3c	100	96.495	ENSCJAG00000006341	-	100	96.495	Callithrix_jacchus
ENSMUSG00000030738	Eif3c	100	97.043	ENSCAFG00000017143	-	100	97.043	Canis_familiaris
ENSMUSG00000030738	Eif3c	100	97.152	ENSCAFG00020017587	-	100	97.152	Canis_lupus_dingo
ENSMUSG00000030738	Eif3c	100	95.833	ENSCHIG00000024795	-	100	95.833	Capra_hircus
ENSMUSG00000030738	Eif3c	100	96.276	ENSTSYG00000003486	-	100	96.276	Carlito_syrichta
ENSMUSG00000030738	Eif3c	96	86.750	ENSCAPG00000015887	-	100	88.109	Cavia_aperea
ENSMUSG00000030738	Eif3c	100	97.481	ENSCPOG00000007533	-	100	97.481	Cavia_porcellus
ENSMUSG00000030738	Eif3c	100	91.238	ENSCCAG00000027724	-	100	90.471	Cebus_capucinus
ENSMUSG00000030738	Eif3c	99	82.029	ENSCCAG00000029099	-	99	80.947	Cebus_capucinus
ENSMUSG00000030738	Eif3c	100	95.455	ENSCCAG00000034928	-	100	95.455	Cebus_capucinus
ENSMUSG00000030738	Eif3c	100	96.605	ENSCATG00000032673	-	100	96.605	Cercocebus_atys
ENSMUSG00000030738	Eif3c	100	96.276	ENSCLAG00000011094	-	100	96.386	Chinchilla_lanigera
ENSMUSG00000030738	Eif3c	100	96.605	ENSCSAG00000006297	-	100	96.605	Chlorocebus_sabaeus
ENSMUSG00000030738	Eif3c	55	79.923	ENSCHOG00000003120	-	88	79.923	Choloepus_hoffmanni
ENSMUSG00000030738	Eif3c	71	92.038	ENSCPBG00000012407	-	92	81.595	Chrysemys_picta_bellii
ENSMUSG00000030738	Eif3c	79	55.822	ENSCSAVG00000006744	-	96	56.491	Ciona_savignyi
ENSMUSG00000030738	Eif3c	100	96.605	ENSCANG00000033626	-	100	96.605	Colobus_angolensis_palliatus
ENSMUSG00000030738	Eif3c	100	98.136	ENSCGRG00001015265	EIF3C	100	98.136	Cricetulus_griseus_chok1gshd
ENSMUSG00000030738	Eif3c	100	91.600	ENSCGRG00000006124	-	100	91.600	Cricetulus_griseus_crigri
ENSMUSG00000030738	Eif3c	100	73.880	ENSCSEG00000017770	eif3c	100	73.989	Cynoglossus_semilaevis
ENSMUSG00000030738	Eif3c	99	74.700	ENSCVAG00000005402	eif3c	98	81.169	Cyprinodon_variegatus
ENSMUSG00000030738	Eif3c	99	74.563	ENSDARG00000016443	eif3c	98	74.646	Danio_rerio
ENSMUSG00000030738	Eif3c	100	96.605	ENSDNOG00000031497	-	100	96.605	Dasypus_novemcinctus
ENSMUSG00000030738	Eif3c	100	97.371	ENSDORG00000016471	Eif3c	100	97.371	Dipodomys_ordii
ENSMUSG00000030738	Eif3c	66	56.860	FBgn0034258	eIF3c	95	50.443	Drosophila_melanogaster
ENSMUSG00000030738	Eif3c	92	98.624	ENSETEG00000013527	-	92	98.624	Echinops_telfairi
ENSMUSG00000030738	Eif3c	99	62.836	ENSEBUG00000001629	eif3c	99	63.430	Eptatretus_burgeri
ENSMUSG00000030738	Eif3c	100	97.043	ENSECAG00000008746	-	100	97.043	Equus_caballus
ENSMUSG00000030738	Eif3c	87	95.739	ENSEEUG00000006148	-	100	95.739	Erinaceus_europaeus
ENSMUSG00000030738	Eif3c	65	63.435	ENSEEUG00000000726	-	64	63.435	Erinaceus_europaeus
ENSMUSG00000030738	Eif3c	99	74.074	ENSELUG00000022257	eif3c	92	82.421	Esox_lucius
ENSMUSG00000030738	Eif3c	100	96.933	ENSFCAG00000015782	-	100	96.933	Felis_catus
ENSMUSG00000030738	Eif3c	100	97.043	ENSFDAG00000003588	-	100	97.043	Fukomys_damarensis
ENSMUSG00000030738	Eif3c	99	75.109	ENSFHEG00000014154	EIF3C	98	75.461	Fundulus_heteroclitus
ENSMUSG00000030738	Eif3c	97	73.513	ENSGMOG00000016885	eif3c	99	75.253	Gadus_morhua
ENSMUSG00000030738	Eif3c	59	82.051	ENSGALG00000047139	-	65	84.694	Gallus_gallus
ENSMUSG00000030738	Eif3c	96	75.823	ENSGACG00000007652	eif3c	100	75.109	Gasterosteus_aculeatus
ENSMUSG00000030738	Eif3c	92	82.388	ENSGAGG00000006666	-	100	82.506	Gopherus_agassizii
ENSMUSG00000030738	Eif3c	99	94.286	ENSGGOG00000026919	EIF3C	100	96.587	Gorilla_gorilla
ENSMUSG00000030738	Eif3c	72	95.580	ENSGGOG00000022677	-	100	94.981	Gorilla_gorilla
ENSMUSG00000030738	Eif3c	100	97.043	ENSHGLG00000011445	EIF3C	100	97.043	Heterocephalus_glaber_female
ENSMUSG00000030738	Eif3c	100	97.043	ENSHGLG00100000217	EIF3C	100	97.043	Heterocephalus_glaber_male
ENSMUSG00000030738	Eif3c	99	75.109	ENSHCOG00000019694	eif3c	98	75.109	Hippocampus_comes
ENSMUSG00000030738	Eif3c	99	74.891	ENSIPUG00000016878	eif3c	98	75.599	Ictalurus_punctatus
ENSMUSG00000030738	Eif3c	100	97.043	ENSSTOG00000021278	-	100	97.043	Ictidomys_tridecemlineatus
ENSMUSG00000030738	Eif3c	100	96.933	ENSJJAG00000012722	Eif3c	100	96.933	Jaculus_jaculus
ENSMUSG00000030738	Eif3c	99	75.658	ENSKMAG00000021662	eif3c	97	74.701	Kryptolebias_marmoratus
ENSMUSG00000030738	Eif3c	99	74.447	ENSLBEG00000023370	eif3c	99	73.758	Labrus_bergylta
ENSMUSG00000030738	Eif3c	100	77.511	ENSLACG00000000770	eif3c	100	79.171	Latimeria_chalumnae
ENSMUSG00000030738	Eif3c	100	96.057	ENSLAFG00000027426	-	100	96.057	Loxodonta_africana
ENSMUSG00000030738	Eif3c	100	96.605	ENSMFAG00000041930	-	100	96.605	Macaca_fascicularis
ENSMUSG00000030738	Eif3c	100	96.605	ENSMMUG00000011798	-	100	96.605	Macaca_mulatta
ENSMUSG00000030738	Eif3c	100	96.605	ENSMNEG00000023915	-	100	96.605	Macaca_nemestrina
ENSMUSG00000030738	Eif3c	100	96.605	ENSMLEG00000027529	-	100	96.605	Mandrillus_leucophaeus
ENSMUSG00000030738	Eif3c	99	77.794	ENSMAMG00000012512	eif3c	95	83.833	Mastacembelus_armatus
ENSMUSG00000030738	Eif3c	99	71.775	ENSMZEG00005013699	eif3c	96	82.975	Maylandia_zebra
ENSMUSG00000030738	Eif3c	84	80.293	ENSMZEG00005013685	eif3c	92	80.293	Maylandia_zebra
ENSMUSG00000030738	Eif3c	100	98.246	ENSMAUG00000010621	Eif3c	100	98.246	Mesocricetus_auratus
ENSMUSG00000030738	Eif3c	100	96.495	ENSMICG00000036748	-	100	96.495	Microcebus_murinus
ENSMUSG00000030738	Eif3c	100	95.833	ENSMOCG00000004204	Eif3c	100	95.943	Microtus_ochrogaster
ENSMUSG00000030738	Eif3c	100	71.162	ENSMMOG00000001572	eif3c	72	82.178	Mola_mola
ENSMUSG00000030738	Eif3c	100	93.654	ENSMODG00000015579	-	100	93.654	Monodelphis_domestica
ENSMUSG00000030738	Eif3c	84	83.748	ENSMALG00000008907	eif3c	92	83.609	Monopterus_albus
ENSMUSG00000030738	Eif3c	100	100.000	MGP_CAROLIEiJ_G0030451	Eif3c	100	100.000	Mus_caroli
ENSMUSG00000030738	Eif3c	100	100.000	MGP_PahariEiJ_G0013661	Eif3c	100	100.000	Mus_pahari
ENSMUSG00000030738	Eif3c	100	100.000	MGP_SPRETEiJ_G0031565	Eif3c	100	100.000	Mus_spretus
ENSMUSG00000030738	Eif3c	96	96.591	ENSMPUG00000012732	-	100	96.591	Mustela_putorius_furo
ENSMUSG00000030738	Eif3c	100	95.838	ENSMLUG00000015558	-	100	95.947	Myotis_lucifugus
ENSMUSG00000030738	Eif3c	93	89.091	ENSNGAG00000010901	-	98	89.091	Nannospalax_galili
ENSMUSG00000030738	Eif3c	100	97.919	ENSNGAG00000007177	-	100	97.919	Nannospalax_galili
ENSMUSG00000030738	Eif3c	100	95.455	ENSNLEG00000001425	-	100	95.455	Nomascus_leucogenys
ENSMUSG00000030738	Eif3c	100	76.175	ENSMEUG00000009939	-	99	76.747	Notamacropus_eugenii
ENSMUSG00000030738	Eif3c	89	60.897	ENSMEUG00000005317	-	100	58.333	Notamacropus_eugenii
ENSMUSG00000030738	Eif3c	100	96.605	ENSOPRG00000000931	-	100	96.605	Ochotona_princeps
ENSMUSG00000030738	Eif3c	100	96.824	ENSODEG00000013508	-	100	96.824	Octodon_degus
ENSMUSG00000030738	Eif3c	66	62.706	ENSONIG00000011434	eif3c	99	62.706	Oreochromis_niloticus
ENSMUSG00000030738	Eif3c	100	89.440	ENSOANG00000011410	-	100	90.194	Ornithorhynchus_anatinus
ENSMUSG00000030738	Eif3c	100	97.043	ENSOCUG00000022489	-	100	97.043	Oryctolagus_cuniculus
ENSMUSG00000030738	Eif3c	99	74.169	ENSORLG00000006318	eif3c	98	71.669	Oryzias_latipes
ENSMUSG00000030738	Eif3c	99	74.169	ENSORLG00020015713	eif3c	95	82.034	Oryzias_latipes_hni
ENSMUSG00000030738	Eif3c	99	74.058	ENSORLG00015013772	eif3c	97	73.620	Oryzias_latipes_hsok
ENSMUSG00000030738	Eif3c	100	74.246	ENSOMEG00000020450	eif3c	100	74.030	Oryzias_melastigma
ENSMUSG00000030738	Eif3c	100	96.386	ENSOGAG00000012737	-	100	96.386	Otolemur_garnettii
ENSMUSG00000030738	Eif3c	100	95.833	ENSOARG00000002892	-	100	95.833	Ovis_aries
ENSMUSG00000030738	Eif3c	100	96.933	ENSPPRG00000012336	-	100	96.933	Panthera_pardus
ENSMUSG00000030738	Eif3c	100	96.933	ENSPTIG00000011712	-	100	96.933	Panthera_tigris_altaica
ENSMUSG00000030738	Eif3c	100	96.605	ENSPANG00000021151	-	100	96.605	Papio_anubis
ENSMUSG00000030738	Eif3c	99	75.708	ENSPKIG00000002049	eif3c	98	75.381	Paramormyrops_kingsleyae
ENSMUSG00000030738	Eif3c	89	83.914	ENSPMGG00000005409	eif3c	94	83.914	Periophthalmus_magnuspinnatus
ENSMUSG00000030738	Eif3c	100	96.616	ENSPEMG00000010899	Eif3c	100	96.616	Peromyscus_maniculatus_bairdii
ENSMUSG00000030738	Eif3c	100	92.998	ENSPCIG00000025206	-	100	93.764	Phascolarctos_cinereus
ENSMUSG00000030738	Eif3c	99	74.565	ENSPFOG00000004476	eif3c	98	74.646	Poecilia_formosa
ENSMUSG00000030738	Eif3c	100	71.225	ENSPLAG00000017480	eif3c	94	83.085	Poecilia_latipinna
ENSMUSG00000030738	Eif3c	99	75.190	ENSPMEG00000019512	eif3c	98	74.728	Poecilia_mexicana
ENSMUSG00000030738	Eif3c	100	71.116	ENSPREG00000023139	eif3c	100	71.600	Poecilia_reticulata
ENSMUSG00000030738	Eif3c	100	93.538	ENSPPYG00000007227	-	100	93.538	Pongo_abelii
ENSMUSG00000030738	Eif3c	66	97.338	ENSPCAG00000012710	-	100	97.338	Procavia_capensis
ENSMUSG00000030738	Eif3c	100	96.824	ENSPCOG00000019289	-	100	96.824	Propithecus_coquereli
ENSMUSG00000030738	Eif3c	100	96.714	ENSPVAG00000005804	-	100	96.714	Pteropus_vampyrus
ENSMUSG00000030738	Eif3c	86	52.632	ENSPNYG00000016530	eif3c	81	79.394	Pundamilia_nyererei
ENSMUSG00000030738	Eif3c	99	75.711	ENSPNAG00000024040	eif3c	99	75.956	Pygocentrus_nattereri
ENSMUSG00000030738	Eif3c	100	99.012	ENSRNOG00000018761	Eif3c	100	99.012	Rattus_norvegicus
ENSMUSG00000030738	Eif3c	100	95.455	ENSRBIG00000044009	-	100	95.455	Rhinopithecus_bieti
ENSMUSG00000030738	Eif3c	100	96.605	ENSRROG00000043626	-	100	96.605	Rhinopithecus_roxellana
ENSMUSG00000030738	Eif3c	70	30.970	YMR309C	-	81	30.297	Saccharomyces_cerevisiae
ENSMUSG00000030738	Eif3c	100	96.605	ENSSBOG00000032155	-	100	96.605	Saimiri_boliviensis_boliviensis
ENSMUSG00000030738	Eif3c	96	92.525	ENSSHAG00000011808	-	100	93.318	Sarcophilus_harrisii
ENSMUSG00000030738	Eif3c	99	74.836	ENSSFOG00015021823	eif3c	98	75.437	Scleropages_formosus
ENSMUSG00000030738	Eif3c	97	75.816	ENSSMAG00000016638	eif3c	97	75.928	Scophthalmus_maximus
ENSMUSG00000030738	Eif3c	98	78.686	ENSSDUG00000023117	eif3c	98	75.682	Seriola_dumerili
ENSMUSG00000030738	Eif3c	99	75.682	ENSSLDG00000009706	eif3c	93	83.170	Seriola_lalandi_dorsalis
ENSMUSG00000030738	Eif3c	100	83.807	ENSSPUG00000016470	-	100	83.917	Sphenodon_punctatus
ENSMUSG00000030738	Eif3c	100	75.517	ENSSPAG00000000426	eif3c	100	75.299	Stegastes_partitus
ENSMUSG00000030738	Eif3c	100	97.043	ENSSSCG00000034927	-	100	97.043	Sus_scrofa
ENSMUSG00000030738	Eif3c	99	73.498	ENSTRUG00000008951	eif3c	99	73.820	Takifugu_rubripes
ENSMUSG00000030738	Eif3c	100	73.232	ENSTNIG00000015210	eif3c	100	73.993	Tetraodon_nigroviridis
ENSMUSG00000030738	Eif3c	100	96.605	ENSTTRG00000005880	-	100	96.605	Tursiops_truncatus
ENSMUSG00000030738	Eif3c	72	98.015	ENSUAMG00000001127	-	91	100.000	Ursus_americanus
ENSMUSG00000030738	Eif3c	100	97.152	ENSUMAG00000010927	-	100	97.152	Ursus_maritimus
ENSMUSG00000030738	Eif3c	100	95.619	ENSVVUG00000025970	-	100	95.619	Vulpes_vulpes
ENSMUSG00000030738	Eif3c	100	77.056	ENSXETG00000002941	eif3c	100	77.405	Xenopus_tropicalis
ENSMUSG00000030738	Eif3c	100	74.486	ENSXMAG00000013796	eif3c	100	74.162	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0003743	translation initiation factor activity	21873635.	IBA	Function
GO:0003743	translation initiation factor activity	17581632.	IDA	Function
GO:0003743	translation initiation factor activity	-	ISO	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005852	eukaryotic translation initiation factor 3 complex	21873635.	IBA	Component
GO:0005852	eukaryotic translation initiation factor 3 complex	17581632.	IDA	Component
GO:0005852	eukaryotic translation initiation factor 3 complex	-	ISO	Component
GO:0006412	translation	-	IEA	Process
GO:0006413	translational initiation	21873635.	IBA	Process
GO:0006413	translational initiation	17581632.	IDA	Process
GO:0006413	translational initiation	-	ISO	Process
GO:0031369	translation initiation factor binding	21873635.	IBA	Function
GO:0043022	ribosome binding	-	ISO	Function
GO:0045727	positive regulation of translation	-	ISO	Process
GO:0071541	eukaryotic translation initiation factor 3 complex, eIF3m	24003236.	IDA	Component
GO:1902416	positive regulation of mRNA binding	-	ISO	Process