EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000030779 (Gene tree)
Gene ID: 19647
Gene Symbol: Rbbp6
Alias: 4933422O15Rik|C030034J04Rik
Full Name: retinoblastoma binding protein 6%2C ubiquitin ligase
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 36872 bases
Position: chr7:122965686-123002557
Accession: 894835
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000071519	zf-CCHC_2	PF13696.6	8.7e-09	1	1
ENSMUSP00000155989	zf-CCHC_2	PF13696.6	8.7e-09	1	1
ENSMUSP00000049528	zf-CCHC_2	PF13696.6	8.9e-09	1	1
ENSMUSP00000155989	zf-CCHC	PF00098.23	0.00012	1	1
ENSMUSP00000071519	zf-CCHC	PF00098.23	0.00013	1	1
ENSMUSP00000049528	zf-CCHC	PF00098.23	0.00014	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000205495	-	2276	-	ENSMUSP00000145759	19 (aa)	-	A0A0U1RNZ1
ENSMUST00000126053	-	542	-	-	- (aa)	-	-
ENSMUST00000156738	-	698	-	-	- (aa)	-	-
ENSMUST00000137860	-	582	-	-	- (aa)	-	-
ENSMUST00000206179	-	809	-	-	- (aa)	-	-
ENSMUST00000231323	-	5331	-	ENSMUSP00000155989	1759 (aa)	-	UPI000DE7E2A5
ENSMUST00000148880	-	478	-	ENSMUSP00000115530	79 (aa)	-	D3YZU8
ENSMUST00000052135	-	6184	-	ENSMUSP00000049528	1790 (aa)	-	P97868
ENSMUST00000098062	-	6345	-	ENSMUSP00000095670	123 (aa)	-	A0A0R4J165
ENSMUST00000071590	-	5728	XM_006507470	ENSMUSP00000071519	1756 (aa)	XP_006507533	P97868

Gene Model

Click here to download ENSMUSG00000030779's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000030779's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000030779	Rbbp6	98	88.619	ENSG00000122257	RBBP6	100	98.007	Homo_sapiens
ENSMUSG00000030779	Rbbp6	98	85.369	ENSAMEG00000009312	RBBP6	94	87.279	Ailuropoda_melanoleuca
ENSMUSG00000030779	Rbbp6	95	69.994	ENSAPLG00000009569	RBBP6	96	72.262	Anas_platyrhynchos
ENSMUSG00000030779	Rbbp6	57	71.429	ENSACAG00000011794	RBBP6	99	68.713	Anolis_carolinensis
ENSMUSG00000030779	Rbbp6	98	86.308	ENSANAG00000037384	RBBP6	93	91.412	Aotus_nancymaae
ENSMUSG00000030779	Rbbp6	98	86.101	ENSBTAG00000009441	RBBP6	92	90.832	Bos_taurus
ENSMUSG00000030779	Rbbp6	98	85.557	ENSCJAG00000020661	RBBP6	93	89.374	Callithrix_jacchus
ENSMUSG00000030779	Rbbp6	93	93.683	ENSCAFG00000017566	RBBP6	98	87.301	Canis_familiaris
ENSMUSG00000030779	Rbbp6	98	85.755	ENSCHIG00000013732	RBBP6	92	90.832	Capra_hircus
ENSMUSG00000030779	Rbbp6	98	86.964	ENSTSYG00000000822	RBBP6	89	96.074	Carlito_syrichta
ENSMUSG00000030779	Rbbp6	91	83.948	ENSCAPG00000012399	RBBP6	97	83.935	Cavia_aperea
ENSMUSG00000030779	Rbbp6	98	85.093	ENSCPOG00000040025	RBBP6	94	86.872	Cavia_porcellus
ENSMUSG00000030779	Rbbp6	98	86.366	ENSCCAG00000023229	RBBP6	89	96.305	Cebus_capucinus
ENSMUSG00000030779	Rbbp6	98	86.077	ENSCATG00000033601	RBBP6	89	96.305	Cercocebus_atys
ENSMUSG00000030779	Rbbp6	98	85.325	ENSCLAG00000009872	RBBP6	93	91.412	Chinchilla_lanigera
ENSMUSG00000030779	Rbbp6	98	86.135	ENSCSAG00000006609	RBBP6	94	88.114	Chlorocebus_sabaeus
ENSMUSG00000030779	Rbbp6	63	96.166	ENSCHOG00000000278	RBBP6	63	96.148	Choloepus_hoffmanni
ENSMUSG00000030779	Rbbp6	98	72.225	ENSCPBG00000001818	RBBP6	94	79.350	Chrysemys_picta_bellii
ENSMUSG00000030779	Rbbp6	98	86.135	ENSCANG00000039613	RBBP6	89	96.998	Colobus_angolensis_palliatus
ENSMUSG00000030779	Rbbp6	98	91.956	ENSCGRG00001017193	Rbbp6	94	94.024	Cricetulus_griseus_chok1gshd
ENSMUSG00000030779	Rbbp6	98	91.956	ENSCGRG00000011887	Rbbp6	94	94.024	Cricetulus_griseus_crigri
ENSMUSG00000030779	Rbbp6	98	87.977	ENSDNOG00000048802	RBBP6	94	87.977	Dasypus_novemcinctus
ENSMUSG00000030779	Rbbp6	99	84.764	ENSDORG00000010285	Rbbp6	96	86.777	Dipodomys_ordii
ENSMUSG00000030779	Rbbp6	98	86.906	ENSFCAG00000043694	RBBP6	89	95.612	Felis_catus
ENSMUSG00000030779	Rbbp6	96	69.540	ENSFALG00000003750	RBBP6	94	71.437	Ficedula_albicollis
ENSMUSG00000030779	Rbbp6	98	84.994	ENSFDAG00000013132	RBBP6	94	86.946	Fukomys_damarensis
ENSMUSG00000030779	Rbbp6	99	71.683	ENSGALG00000006043	RBBP6	83	79.848	Gallus_gallus
ENSMUSG00000030779	Rbbp6	98	71.995	ENSGAGG00000004371	RBBP6	94	79.924	Gopherus_agassizii
ENSMUSG00000030779	Rbbp6	98	86.251	ENSGGOG00000007137	RBBP6	89	96.536	Gorilla_gorilla
ENSMUSG00000030779	Rbbp6	98	84.571	ENSHGLG00000008327	RBBP6	94	86.339	Heterocephalus_glaber_female
ENSMUSG00000030779	Rbbp6	95	82.526	ENSHGLG00100007773	RBBP6	86	86.689	Heterocephalus_glaber_male
ENSMUSG00000030779	Rbbp6	98	88.805	ENSSTOG00000016006	RBBP6	94	88.664	Ictidomys_tridecemlineatus
ENSMUSG00000030779	Rbbp6	98	85.301	ENSJJAG00000014549	Rbbp6	94	87.234	Jaculus_jaculus
ENSMUSG00000030779	Rbbp6	97	59.703	ENSLACG00000012333	RBBP6	94	59.522	Latimeria_chalumnae
ENSMUSG00000030779	Rbbp6	95	49.917	ENSLOCG00000005487	RBBP6	94	54.060	Lepisosteus_oculatus
ENSMUSG00000030779	Rbbp6	98	85.549	ENSLAFG00000009528	RBBP6	94	87.470	Loxodonta_africana
ENSMUSG00000030779	Rbbp6	98	86.077	ENSMFAG00000038627	RBBP6	89	96.536	Macaca_fascicularis
ENSMUSG00000030779	Rbbp6	98	86.020	ENSMMUG00000015908	RBBP6	89	96.536	Macaca_mulatta
ENSMUSG00000030779	Rbbp6	98	86.193	ENSMNEG00000033630	RBBP6	89	96.536	Macaca_nemestrina
ENSMUSG00000030779	Rbbp6	98	86.135	ENSMLEG00000030073	RBBP6	89	96.536	Mandrillus_leucophaeus
ENSMUSG00000030779	Rbbp6	96	70.116	ENSMGAG00000006423	RBBP6	96	70.814	Meleagris_gallopavo
ENSMUSG00000030779	Rbbp6	98	88.992	ENSMICG00000008059	RBBP6	89	96.305	Microcebus_murinus
ENSMUSG00000030779	Rbbp6	98	78.354	ENSMODG00000016318	-	94	78.354	Monodelphis_domestica
ENSMUSG00000030779	Rbbp6	73	98.626	MGP_CAROLIEiJ_G0030424	-	100	99.221	Mus_caroli
ENSMUSG00000030779	Rbbp6	100	96.371	MGP_PahariEiJ_G0013634	Rbbp6	100	96.371	Mus_pahari
ENSMUSG00000030779	Rbbp6	100	99.218	MGP_SPRETEiJ_G0031538	Rbbp6	100	99.218	Mus_spretus
ENSMUSG00000030779	Rbbp6	98	84.046	ENSMLUG00000010601	-	94	85.934	Myotis_lucifugus
ENSMUSG00000030779	Rbbp6	95	88.964	ENSNGAG00000002381	Rbbp6	92	88.964	Nannospalax_galili
ENSMUSG00000030779	Rbbp6	92	96.000	ENSNLEG00000011896	RBBP6	95	92.212	Nomascus_leucogenys
ENSMUSG00000030779	Rbbp6	88	78.240	ENSMEUG00000014491	RBBP6	88	78.240	Notamacropus_eugenii
ENSMUSG00000030779	Rbbp6	61	98.870	ENSOPRG00000016272	RBBP6	59	98.830	Ochotona_princeps
ENSMUSG00000030779	Rbbp6	97	82.664	ENSODEG00000012319	RBBP6	94	84.301	Octodon_degus
ENSMUSG00000030779	Rbbp6	98	77.182	ENSOANG00000007673	RBBP6	94	77.695	Ornithorhynchus_anatinus
ENSMUSG00000030779	Rbbp6	96	88.923	ENSOCUG00000004346	RBBP6	99	83.437	Oryctolagus_cuniculus
ENSMUSG00000030779	Rbbp6	98	86.585	ENSOGAG00000026986	RBBP6	94	88.298	Otolemur_garnettii
ENSMUSG00000030779	Rbbp6	98	83.986	ENSOARG00000017741	RBBP6	92	87.986	Ovis_aries
ENSMUSG00000030779	Rbbp6	98	84.749	ENSPPAG00000023595	RBBP6	94	86.694	Pan_paniscus
ENSMUSG00000030779	Rbbp6	98	86.848	ENSPPRG00000004074	RBBP6	89	95.381	Panthera_pardus
ENSMUSG00000030779	Rbbp6	98	86.848	ENSPTIG00000010342	RBBP6	89	95.381	Panthera_tigris_altaica
ENSMUSG00000030779	Rbbp6	98	86.482	ENSPTRG00000007897	RBBP6	89	96.767	Pan_troglodytes
ENSMUSG00000030779	Rbbp6	99	88.413	ENSPANG00000019625	RBBP6	89	96.767	Papio_anubis
ENSMUSG00000030779	Rbbp6	93	68.784	ENSPSIG00000004108	RBBP6	91	68.784	Pelodiscus_sinensis
ENSMUSG00000030779	Rbbp6	98	80.392	ENSPCIG00000014000	RBBP6	93	87.874	Phascolarctos_cinereus
ENSMUSG00000030779	Rbbp6	94	87.884	ENSPPYG00000007201	RBBP6	93	91.703	Pongo_abelii
ENSMUSG00000030779	Rbbp6	98	86.964	ENSPCOG00000021939	RBBP6	89	96.074	Propithecus_coquereli
ENSMUSG00000030779	Rbbp6	63	91.289	ENSPVAG00000001110	RBBP6	82	89.409	Pteropus_vampyrus
ENSMUSG00000030779	Rbbp6	100	95.424	ENSRNOG00000012806	Rbbp6	100	95.815	Rattus_norvegicus
ENSMUSG00000030779	Rbbp6	98	82.982	ENSRBIG00000004517	RBBP6	99	90.649	Rhinopithecus_bieti
ENSMUSG00000030779	Rbbp6	98	86.135	ENSRROG00000032092	RBBP6	89	96.536	Rhinopithecus_roxellana
ENSMUSG00000030779	Rbbp6	98	85.846	ENSSBOG00000021666	RBBP6	93	89.665	Saimiri_boliviensis_boliviensis
ENSMUSG00000030779	Rbbp6	98	78.592	ENSSHAG00000004727	-	94	80.307	Sarcophilus_harrisii
ENSMUSG00000030779	Rbbp6	86	95.357	ENSSARG00000004977	RBBP6	94	83.955	Sorex_araneus
ENSMUSG00000030779	Rbbp6	98	86.135	ENSSSCG00000007830	RBBP6	93	90.975	Sus_scrofa
ENSMUSG00000030779	Rbbp6	93	71.429	ENSTGUG00000006185	RBBP6	94	71.877	Taeniopygia_guttata
ENSMUSG00000030779	Rbbp6	98	83.931	ENSTTRG00000002696	RBBP6	94	85.773	Tursiops_truncatus
ENSMUSG00000030779	Rbbp6	98	85.557	ENSUMAG00000008537	RBBP6	93	89.083	Ursus_maritimus
ENSMUSG00000030779	Rbbp6	70	87.991	ENSVPAG00000006458	RBBP6	79	91.694	Vicugna_pacos
ENSMUSG00000030779	Rbbp6	98	86.944	ENSVVUG00000005484	RBBP6	94	88.895	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001701	in utero embryonic development	17470788.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004842	ubiquitin-protein transferase activity	-	ISO	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005813	centrosome	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0006260	DNA replication	-	IEA	Process
GO:0006275	regulation of DNA replication	-	ISO	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0006511	ubiquitin-dependent protein catabolic process	24726359.	IMP	Process
GO:0006511	ubiquitin-dependent protein catabolic process	-	ISO	Process
GO:0006974	cellular response to DNA damage stimulus	-	ISO	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0016567	protein ubiquitination	-	ISO	Process
GO:0016607	nuclear speck	-	ISO	Component
GO:0016740	transferase activity	-	IEA	Function
GO:0019901	protein kinase binding	-	ISO	Function
GO:0032991	protein-containing complex	-	ISO	Component
GO:0035264	multicellular organism growth	17470788.	IMP	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0048568	embryonic organ development	17470788.	IGI	Process
GO:0061053	somite development	17470788.	IMP	Process
GO:0061630	ubiquitin protein ligase activity	-	ISO	Function