EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000030846 (Gene tree)
Gene ID: 21843
Gene Symbol: Tial1
Alias: 5330433G13Rik|TIAR|mTIAR
Full Name: Tia1 cytotoxic granule-associated RNA binding protein-like 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 21941 bases
Position: chr7:128439777-128461717
Accession: 107913
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000033135	RRM_1	PF00076.22	2.8e-63	1	3
ENSMUSP00000033135	RRM_1	PF00076.22	2.8e-63	2	3
ENSMUSP00000033135	RRM_1	PF00076.22	2.8e-63	3	3
ENSMUSP00000126458	RRM_1	PF00076.22	2.8e-63	1	3
ENSMUSP00000126458	RRM_1	PF00076.22	2.8e-63	2	3
ENSMUSP00000126458	RRM_1	PF00076.22	2.8e-63	3	3
ENSMUSP00000101833	RRM_1	PF00076.22	4e-60	1	3
ENSMUSP00000101833	RRM_1	PF00076.22	4e-60	2	3
ENSMUSP00000101833	RRM_1	PF00076.22	4e-60	3	3
ENSMUSP00000101835	RRM_1	PF00076.22	9.7e-51	1	3
ENSMUSP00000101835	RRM_1	PF00076.22	9.7e-51	2	3
ENSMUSP00000101835	RRM_1	PF00076.22	9.7e-51	3	3
ENSMUSP00000145933	RRM_1	PF00076.22	2.3e-26	1	2
ENSMUSP00000145933	RRM_1	PF00076.22	2.3e-26	2	2
ENSMUSP00000145770	RRM_1	PF00076.22	2.9e-07	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000123666	-	2319	-	ENSMUSP00000116921	135 (aa)	-	D6RGU1
ENSMUST00000205835	-	562	-	ENSMUSP00000145770	107 (aa)	-	A0A0U1RP00
ENSMUST00000136782	-	674	-	-	- (aa)	-	-
ENSMUST00000205278	-	804	-	ENSMUSP00000145908	140 (aa)	-	A0A0U1RPB0
ENSMUST00000106226	-	4451	-	ENSMUSP00000101833	392 (aa)	-	P70318
ENSMUST00000141126	-	1344	XM_006507575	ENSMUSP00000145933	244 (aa)	XP_006507638	A0A0U1RPD3
ENSMUST00000106228	-	2835	XM_006507571	ENSMUSP00000101835	336 (aa)	XP_006507634	D3Z3Y4
ENSMUST00000141079	-	4266	-	-	- (aa)	-	-
ENSMUST00000033135	-	1580	-	ENSMUSP00000033135	375 (aa)	-	Q921W2
ENSMUST00000152328	-	560	-	-	- (aa)	-	-
ENSMUST00000133089	-	784	-	ENSMUSP00000146031	42 (aa)	-	A0A0U1RPL4
ENSMUST00000133444	-	953	-	ENSMUSP00000145943	106 (aa)	-	A0A0U1RPE1
ENSMUST00000165023	-	2003	XM_006507570	ENSMUSP00000126458	375 (aa)	XP_006507633	Q921W2
ENSMUST00000205774	-	1808	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000030846's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000030846's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000030846	Tial1	94	30.233	ENSMUSG00000011257	Pabpc4	93	35.366
ENSMUSG00000030846	Tial1	67	30.769	ENSMUSG00000040028	Elavl1	95	30.769
ENSMUSG00000030846	Tial1	84	30.088	ENSMUSG00000033760	Rbm4b	92	30.345
ENSMUSG00000030846	Tial1	77	33.019	ENSMUSG00000042396	Rbm7	67	33.019
ENSMUSG00000030846	Tial1	99	31.618	ENSMUSG00000090919	Pabpc4l	94	33.333
ENSMUSG00000030846	Tial1	94	31.783	ENSMUSG00000046173	Pabpc6	56	34.014
ENSMUSG00000030846	Tial1	73	37.179	ENSMUSG00000003410	Elavl3	90	37.179
ENSMUSG00000030846	Tial1	73	35.897	ENSMUSG00000028546	Elavl4	88	35.897
ENSMUSG00000030846	Tial1	71	30.000	ENSMUSG00000033882	Rbm46	52	30.000
ENSMUSG00000030846	Tial1	81	37.333	ENSMUSG00000028137	Celf3	70	34.091
ENSMUSG00000030846	Tial1	64	31.461	ENSMUSG00000031134	Rbmx	90	32.258
ENSMUSG00000030846	Tial1	100	87.440	ENSMUSG00000071337	Tia1	97	86.992
ENSMUSG00000030846	Tial1	65	31.481	ENSMUSG00000002107	Celf2	61	34.177
ENSMUSG00000030846	Tial1	92	32.500	ENSMUSG00000051732	Pabpc2	50	35.036
ENSMUSG00000030846	Tial1	94	31.008	ENSMUSG00000022283	Pabpc1	100	35.294
ENSMUSG00000030846	Tial1	53	32.143	ENSMUSG00000032297	Celf6	54	31.818
ENSMUSG00000030846	Tial1	72	34.615	ENSMUSG00000008489	Elavl2	93	34.615
ENSMUSG00000030846	Tial1	84	30.088	ENSMUSG00000094936	Rbm4	94	30.345
ENSMUSG00000030846	Tial1	81	31.111	ENSMUSG00000025576	Rbfox3	53	31.868
ENSMUSG00000030846	Tial1	69	31.469	ENSMUSG00000054256	Msi1	56	41.379
ENSMUSG00000030846	Tial1	73	33.019	ENSMUSG00000028898	Trnau1ap	60	32.386
ENSMUSG00000030846	Tial1	67	40.244	ENSMUSG00000045193	Cirbp	85	40.244
ENSMUSG00000030846	Tial1	54	37.333	ENSMUSG00000022774	Ncbp2	71	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000030846	Tial1	100	100.000	ENSG00000151923	TIAL1	100	100.000	Homo_sapiens
ENSMUSG00000030846	Tial1	100	98.770	ENSAMEG00000010147	TIAL1	98	98.438	Ailuropoda_melanoleuca
ENSMUSG00000030846	Tial1	100	97.170	ENSAPLG00000009088	TIAL1	97	96.325	Anas_platyrhynchos
ENSMUSG00000030846	Tial1	98	94.517	ENSACAG00000016986	TIAL1	91	95.845	Anolis_carolinensis
ENSMUSG00000030846	Tial1	100	99.235	ENSANAG00000034445	TIAL1	100	99.235	Aotus_nancymaae
ENSMUSG00000030846	Tial1	100	99.200	ENSBTAG00000004080	TIAL1	100	99.200	Bos_taurus
ENSMUSG00000030846	Tial1	100	99.200	ENSCJAG00000019682	TIAL1	100	99.200	Callithrix_jacchus
ENSMUSG00000030846	Tial1	100	99.235	ENSCAFG00000012171	TIAL1	100	99.235	Canis_familiaris
ENSMUSG00000030846	Tial1	100	99.200	ENSCAFG00020013891	TIAL1	100	99.200	Canis_lupus_dingo
ENSMUSG00000030846	Tial1	100	99.200	ENSCHIG00000020810	TIAL1	100	99.200	Capra_hircus
ENSMUSG00000030846	Tial1	100	99.200	ENSTSYG00000004348	TIAL1	100	99.200	Carlito_syrichta
ENSMUSG00000030846	Tial1	96	100.000	ENSCCAG00000002561	TIAL1	94	100.000	Cebus_capucinus
ENSMUSG00000030846	Tial1	100	94.672	ENSCCAG00000027590	-	100	93.015	Cebus_capucinus
ENSMUSG00000030846	Tial1	100	99.235	ENSCATG00000043838	TIAL1	100	99.235	Cercocebus_atys
ENSMUSG00000030846	Tial1	100	98.980	ENSCLAG00000001273	TIAL1	100	98.980	Chinchilla_lanigera
ENSMUSG00000030846	Tial1	100	99.200	ENSCSAG00000004734	TIAL1	100	99.200	Chlorocebus_sabaeus
ENSMUSG00000030846	Tial1	96	97.059	ENSCHOG00000009888	TIAL1	100	78.740	Choloepus_hoffmanni
ENSMUSG00000030846	Tial1	100	100.000	ENSCPBG00000001103	TIAL1	100	96.164	Chrysemys_picta_bellii
ENSMUSG00000030846	Tial1	100	100.000	ENSCANG00000017395	TIAL1	100	99.235	Colobus_angolensis_palliatus
ENSMUSG00000030846	Tial1	100	100.000	ENSCGRG00001012762	Tial1	100	100.000	Cricetulus_griseus_chok1gshd
ENSMUSG00000030846	Tial1	100	100.000	ENSCGRG00000017323	Tial1	100	100.000	Cricetulus_griseus_crigri
ENSMUSG00000030846	Tial1	100	98.770	ENSDNOG00000009552	TIAL1	100	98.997	Dasypus_novemcinctus
ENSMUSG00000030846	Tial1	100	99.235	ENSDORG00000010683	Tial1	100	99.235	Dipodomys_ordii
ENSMUSG00000030846	Tial1	100	97.541	ENSETEG00000020276	TIAL1	100	98.163	Echinops_telfairi
ENSMUSG00000030846	Tial1	100	99.235	ENSEASG00005014449	TIAL1	100	99.235	Equus_asinus_asinus
ENSMUSG00000030846	Tial1	100	100.000	ENSECAG00000009970	TIAL1	100	100.000	Equus_caballus
ENSMUSG00000030846	Tial1	100	98.361	ENSEEUG00000011861	TIAL1	100	97.900	Erinaceus_europaeus
ENSMUSG00000030846	Tial1	100	100.000	ENSFCAG00000031690	TIAL1	100	99.235	Felis_catus
ENSMUSG00000030846	Tial1	100	98.933	ENSFDAG00000003933	TIAL1	100	98.933	Fukomys_damarensis
ENSMUSG00000030846	Tial1	100	97.170	ENSGALG00000009427	TIAL1	100	96.257	Gallus_gallus
ENSMUSG00000030846	Tial1	100	96.226	ENSGAGG00000023119	TIAL1	100	96.419	Gopherus_agassizii
ENSMUSG00000030846	Tial1	100	99.235	ENSGGOG00000001816	TIAL1	100	99.235	Gorilla_gorilla
ENSMUSG00000030846	Tial1	96	87.255	ENSHGLG00000009491	-	96	74.346	Heterocephalus_glaber_female
ENSMUSG00000030846	Tial1	94	99.237	ENSHGLG00000013775	-	100	90.561	Heterocephalus_glaber_female
ENSMUSG00000030846	Tial1	100	98.667	ENSHGLG00100015062	TIAL1	100	98.667	Heterocephalus_glaber_male
ENSMUSG00000030846	Tial1	96	87.255	ENSHGLG00100006330	-	96	74.084	Heterocephalus_glaber_male
ENSMUSG00000030846	Tial1	100	99.200	ENSSTOG00000025095	TIAL1	100	99.200	Ictidomys_tridecemlineatus
ENSMUSG00000030846	Tial1	100	100.000	ENSJJAG00000005398	-	100	99.213	Jaculus_jaculus
ENSMUSG00000030846	Tial1	100	84.836	ENSJJAG00000022559	-	100	84.836	Jaculus_jaculus
ENSMUSG00000030846	Tial1	100	94.118	ENSLACG00000011749	TIAL1	99	87.212	Latimeria_chalumnae
ENSMUSG00000030846	Tial1	100	98.770	ENSLAFG00000003412	TIAL1	100	99.213	Loxodonta_africana
ENSMUSG00000030846	Tial1	100	99.235	ENSMFAG00000002789	TIAL1	100	99.235	Macaca_fascicularis
ENSMUSG00000030846	Tial1	100	99.200	ENSMMUG00000001472	TIAL1	100	99.200	Macaca_mulatta
ENSMUSG00000030846	Tial1	100	99.235	ENSMNEG00000032245	TIAL1	100	99.235	Macaca_nemestrina
ENSMUSG00000030846	Tial1	100	99.235	ENSMLEG00000034719	TIAL1	100	99.235	Mandrillus_leucophaeus
ENSMUSG00000030846	Tial1	100	97.170	ENSMGAG00000011368	TIAL1	100	92.092	Meleagris_gallopavo
ENSMUSG00000030846	Tial1	84	100.000	ENSMAUG00000008932	-	70	100.000	Mesocricetus_auratus
ENSMUSG00000030846	Tial1	100	99.200	ENSMICG00000037857	TIAL1	100	99.200	Microcebus_murinus
ENSMUSG00000030846	Tial1	100	100.000	ENSMOCG00000014244	Tial1	100	100.000	Microtus_ochrogaster
ENSMUSG00000030846	Tial1	100	96.226	ENSMODG00000008865	TIAL1	99	96.419	Monodelphis_domestica
ENSMUSG00000030846	Tial1	95	84.158	ENSMALG00000007782	TIAL1	100	75.371	Monopterus_albus
ENSMUSG00000030846	Tial1	100	100.000	MGP_CAROLIEiJ_G0030548	Tial1	100	100.000	Mus_caroli
ENSMUSG00000030846	Tial1	100	100.000	MGP_PahariEiJ_G0013755	Tial1	100	100.000	Mus_pahari
ENSMUSG00000030846	Tial1	100	100.000	MGP_SPRETEiJ_G0031662	Tial1	100	100.000	Mus_spretus
ENSMUSG00000030846	Tial1	100	99.200	ENSMPUG00000003060	TIAL1	100	99.200	Mustela_putorius_furo
ENSMUSG00000030846	Tial1	100	99.107	ENSMLUG00000004645	TIAL1	99	98.113	Myotis_lucifugus
ENSMUSG00000030846	Tial1	100	100.000	ENSNGAG00000020427	Tial1	100	99.467	Nannospalax_galili
ENSMUSG00000030846	Tial1	100	98.770	ENSNLEG00000016743	TIAL1	100	99.026	Nomascus_leucogenys
ENSMUSG00000030846	Tial1	99	85.970	ENSMEUG00000013120	TIAL1	99	78.517	Notamacropus_eugenii
ENSMUSG00000030846	Tial1	99	98.977	ENSODEG00000017741	TIAL1	99	98.977	Octodon_degus
ENSMUSG00000030846	Tial1	100	99.020	ENSOANG00000004896	-	98	95.157	Ornithorhynchus_anatinus
ENSMUSG00000030846	Tial1	100	99.107	ENSOCUG00000003783	TIAL1	100	96.791	Oryctolagus_cuniculus
ENSMUSG00000030846	Tial1	94	83.000	ENSOMEG00000016815	TIAL1	87	79.295	Oryzias_melastigma
ENSMUSG00000030846	Tial1	100	99.235	ENSOGAG00000011417	TIAL1	100	99.235	Otolemur_garnettii
ENSMUSG00000030846	Tial1	100	99.200	ENSOARG00000002680	TIAL1	100	99.200	Ovis_aries
ENSMUSG00000030846	Tial1	100	99.235	ENSPPAG00000043098	TIAL1	100	99.235	Pan_paniscus
ENSMUSG00000030846	Tial1	100	99.235	ENSPPRG00000003226	TIAL1	100	99.235	Panthera_pardus
ENSMUSG00000030846	Tial1	100	99.235	ENSPTIG00000007899	TIAL1	100	99.235	Panthera_tigris_altaica
ENSMUSG00000030846	Tial1	100	99.200	ENSPTRG00000002996	TIAL1	100	99.200	Pan_troglodytes
ENSMUSG00000030846	Tial1	100	99.235	ENSPANG00000020518	TIAL1	100	99.235	Papio_anubis
ENSMUSG00000030846	Tial1	100	100.000	ENSPEMG00000014538	Tial1	100	100.000	Peromyscus_maniculatus_bairdii
ENSMUSG00000030846	Tial1	99	100.000	ENSPCIG00000003120	TIAL1	100	100.000	Phascolarctos_cinereus
ENSMUSG00000030846	Tial1	100	98.980	ENSPPYG00000002703	TIAL1	100	98.980	Pongo_abelii
ENSMUSG00000030846	Tial1	100	98.728	ENSPCAG00000003192	TIAL1	100	98.728	Procavia_capensis
ENSMUSG00000030846	Tial1	100	99.235	ENSPCOG00000018990	TIAL1	100	99.235	Propithecus_coquereli
ENSMUSG00000030846	Tial1	100	98.980	ENSPVAG00000017585	TIAL1	100	98.980	Pteropus_vampyrus
ENSMUSG00000030846	Tial1	100	100.000	ENSRNOG00000020271	Tial1	100	100.000	Rattus_norvegicus
ENSMUSG00000030846	Tial1	100	100.000	ENSRBIG00000027702	TIAL1	100	99.235	Rhinopithecus_bieti
ENSMUSG00000030846	Tial1	100	100.000	ENSRROG00000043377	TIAL1	100	99.200	Rhinopithecus_roxellana
ENSMUSG00000030846	Tial1	100	99.235	ENSSBOG00000028408	TIAL1	100	99.235	Saimiri_boliviensis_boliviensis
ENSMUSG00000030846	Tial1	100	97.170	ENSSHAG00000012508	TIAL1	98	95.584	Sarcophilus_harrisii
ENSMUSG00000030846	Tial1	100	98.770	ENSSARG00000012980	TIAL1	100	98.691	Sorex_araneus
ENSMUSG00000030846	Tial1	100	98.039	ENSSPUG00000002412	TIAL1	100	95.153	Sphenodon_punctatus
ENSMUSG00000030846	Tial1	100	85.830	ENSSSCG00000015620	-	90	85.830	Sus_scrofa
ENSMUSG00000030846	Tial1	100	100.000	ENSSSCG00000010685	-	100	99.233	Sus_scrofa
ENSMUSG00000030846	Tial1	100	97.170	ENSTGUG00000011148	TIAL1	100	96.325	Taeniopygia_guttata
ENSMUSG00000030846	Tial1	95	80.198	ENSTRUG00000020927	TIAL1	99	74.026	Takifugu_rubripes
ENSMUSG00000030846	Tial1	95	80.198	ENSTNIG00000013091	TIAL1	99	69.208	Tetraodon_nigroviridis
ENSMUSG00000030846	Tial1	100	98.770	ENSTTRG00000014574	TIAL1	100	91.071	Tursiops_truncatus
ENSMUSG00000030846	Tial1	100	100.000	ENSUAMG00000009532	TIAL1	100	99.107	Ursus_americanus
ENSMUSG00000030846	Tial1	100	99.200	ENSUMAG00000003207	TIAL1	100	99.200	Ursus_maritimus
ENSMUSG00000030846	Tial1	100	96.721	ENSVPAG00000001240	TIAL1	97	91.209	Vicugna_pacos
ENSMUSG00000030846	Tial1	100	99.235	ENSVVUG00000011029	TIAL1	100	99.235	Vulpes_vulpes
ENSMUSG00000030846	Tial1	99	89.770	ENSXETG00000010234	tial1	91	87.724	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005515	protein binding	20477871.	IPI	Function
GO:0005634	nucleus	9482885.16278295.19825938.19861488.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	16278295.19861488.	IDA	Component
GO:0006915	apoptotic process	-	IEA	Process
GO:0007281	germ cell development	9482885.	IMP	Process
GO:0008284	positive regulation of cell proliferation	9482885.	IMP	Process
GO:0010494	cytoplasmic stress granule	19825938.19861488.	IDA	Component
GO:0010494	cytoplasmic stress granule	-	ISO	Component
GO:0017091	AU-rich element binding	10921895.	IDA	Function
GO:0017145	stem cell division	9482885.	IMP	Process
GO:1990904	ribonucleoprotein complex	-	ISO	Component