EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000030888 (Gene tree)
Gene ID: 101867
Gene Symbol: Rrp8
Alias: 1500003O22Rik|2900001K19Rik
Full Name: ribosomal RNA processing 8%2C methyltransferase%2C homolog (yeast)
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 5656 bases
Position: chr7:105731730-105737385
Accession: 1914251
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000033179	Methyltransf_8	PF05148.15	1.2e-103	1	1
ENSMUSP00000095752	Methyltransf_8	PF05148.15	1.5e-103	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000148176	-	834	-	-	- (aa)	-	-
ENSMUST00000154852	-	521	-	-	- (aa)	-	-
ENSMUST00000127738	-	545	-	ENSMUSP00000147906	32 (aa)	-	A0A1B0GSE7
ENSMUST00000098148	-	2216	-	ENSMUSP00000095752	503 (aa)	-	E9PVA2
ENSMUST00000033179	-	3053	-	ENSMUSP00000033179	457 (aa)	-	Q9DB85
ENSMUST00000137902	-	411	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000030888's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000030888's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000030888	Rrp8	100	75.764	ENSG00000132275	RRP8	100	75.983	Homo_sapiens
ENSMUSG00000030888	Rrp8	100	74.292	ENSAMEG00000016307	RRP8	100	74.569	Ailuropoda_melanoleuca
ENSMUSG00000030888	Rrp8	100	76.149	ENSANAG00000028524	RRP8	100	76.586	Aotus_nancymaae
ENSMUSG00000030888	Rrp8	100	74.728	ENSBTAG00000000697	RRP8	100	74.728	Bos_taurus
ENSMUSG00000030888	Rrp8	100	75.055	ENSCJAG00000014012	RRP8	100	75.492	Callithrix_jacchus
ENSMUSG00000030888	Rrp8	100	72.629	ENSCAFG00000006476	RRP8	68	73.276	Canis_familiaris
ENSMUSG00000030888	Rrp8	100	71.121	ENSCAFG00020009685	RRP8	100	73.276	Canis_lupus_dingo
ENSMUSG00000030888	Rrp8	100	73.856	ENSCHIG00000019002	RRP8	94	73.856	Capra_hircus
ENSMUSG00000030888	Rrp8	100	74.728	ENSTSYG00000003391	RRP8	100	75.163	Carlito_syrichta
ENSMUSG00000030888	Rrp8	84	69.588	ENSCAPG00000013284	RRP8	100	70.103	Cavia_aperea
ENSMUSG00000030888	Rrp8	100	73.102	ENSCPOG00000012515	RRP8	100	73.536	Cavia_porcellus
ENSMUSG00000030888	Rrp8	100	75.930	ENSCCAG00000035197	RRP8	100	76.149	Cebus_capucinus
ENSMUSG00000030888	Rrp8	100	74.454	ENSCATG00000029344	RRP8	100	74.454	Cercocebus_atys
ENSMUSG00000030888	Rrp8	100	73.753	ENSCLAG00000016099	RRP8	100	73.753	Chinchilla_lanigera
ENSMUSG00000030888	Rrp8	100	72.926	ENSCSAG00000004345	RRP8	100	72.926	Chlorocebus_sabaeus
ENSMUSG00000030888	Rrp8	54	50.199	ENSCSAVG00000006435	-	62	50.199	Ciona_savignyi
ENSMUSG00000030888	Rrp8	100	74.672	ENSCANG00000040771	RRP8	100	74.672	Colobus_angolensis_palliatus
ENSMUSG00000030888	Rrp8	100	88.403	ENSCGRG00001003103	Rrp8	100	88.403	Cricetulus_griseus_chok1gshd
ENSMUSG00000030888	Rrp8	100	87.965	ENSCGRG00000014009	Rrp8	100	87.965	Cricetulus_griseus_crigri
ENSMUSG00000030888	Rrp8	60	53.455	ENSCSEG00000007330	rrp8	69	53.455	Cynoglossus_semilaevis
ENSMUSG00000030888	Rrp8	67	47.231	ENSDARG00000071652	rrp8	80	58.772	Danio_rerio
ENSMUSG00000030888	Rrp8	100	73.856	ENSDNOG00000000812	RRP8	91	74.074	Dasypus_novemcinctus
ENSMUSG00000030888	Rrp8	100	77.074	ENSDORG00000000103	Rrp8	100	77.074	Dipodomys_ordii
ENSMUSG00000030888	Rrp8	50	40.800	FBgn0034422	CG7137	61	42.601	Drosophila_melanogaster
ENSMUSG00000030888	Rrp8	100	71.739	ENSETEG00000008877	RRP8	100	71.739	Echinops_telfairi
ENSMUSG00000030888	Rrp8	97	76.018	ENSEASG00005001761	RRP8	100	75.930	Equus_asinus_asinus
ENSMUSG00000030888	Rrp8	88	74.690	ENSECAG00000006612	RRP8	83	74.641	Equus_caballus
ENSMUSG00000030888	Rrp8	93	74.312	ENSFCAG00000015384	RRP8	100	73.019	Felis_catus
ENSMUSG00000030888	Rrp8	100	72.451	ENSFDAG00000008872	RRP8	100	72.294	Fukomys_damarensis
ENSMUSG00000030888	Rrp8	70	48.615	ENSGACG00000011343	rrp8	84	48.615	Gasterosteus_aculeatus
ENSMUSG00000030888	Rrp8	84	46.115	ENSGAGG00000005261	RRP8	83	46.482	Gopherus_agassizii
ENSMUSG00000030888	Rrp8	100	76.638	ENSGGOG00000000389	RRP8	100	76.638	Gorilla_gorilla
ENSMUSG00000030888	Rrp8	100	71.087	ENSHGLG00000003980	RRP8	100	71.087	Heterocephalus_glaber_female
ENSMUSG00000030888	Rrp8	100	71.087	ENSHGLG00100015659	RRP8	100	71.087	Heterocephalus_glaber_male
ENSMUSG00000030888	Rrp8	100	73.799	ENSSTOG00000016272	RRP8	100	74.728	Ictidomys_tridecemlineatus
ENSMUSG00000030888	Rrp8	100	79.130	ENSJJAG00000020608	-	100	79.130	Jaculus_jaculus
ENSMUSG00000030888	Rrp8	58	52.045	ENSLBEG00000019937	rrp8	68	52.045	Labrus_bergylta
ENSMUSG00000030888	Rrp8	54	56.855	ENSLACG00000001252	-	64	56.800	Latimeria_chalumnae
ENSMUSG00000030888	Rrp8	59	51.648	ENSLOCG00000009591	rrp8	54	49.320	Lepisosteus_oculatus
ENSMUSG00000030888	Rrp8	50	45.652	ENSLOCG00000013776	-	95	44.915	Lepisosteus_oculatus
ENSMUSG00000030888	Rrp8	100	73.913	ENSLAFG00000000112	RRP8	100	73.913	Loxodonta_africana
ENSMUSG00000030888	Rrp8	100	74.891	ENSMFAG00000046084	RRP8	100	74.891	Macaca_fascicularis
ENSMUSG00000030888	Rrp8	100	74.672	ENSMMUG00000007738	RRP8	100	74.672	Macaca_mulatta
ENSMUSG00000030888	Rrp8	100	74.454	ENSMNEG00000029648	RRP8	100	74.454	Macaca_nemestrina
ENSMUSG00000030888	Rrp8	100	74.891	ENSMLEG00000035110	RRP8	100	74.891	Mandrillus_leucophaeus
ENSMUSG00000030888	Rrp8	65	49.175	ENSMAMG00000009679	rrp8	53	49.175	Mastacembelus_armatus
ENSMUSG00000030888	Rrp8	100	83.585	ENSMAUG00000000324	Rrp8	100	83.585	Mesocricetus_auratus
ENSMUSG00000030888	Rrp8	100	72.926	ENSMICG00000038472	RRP8	100	86.325	Microcebus_murinus
ENSMUSG00000030888	Rrp8	100	87.090	ENSMOCG00000002486	Rrp8	100	87.090	Microtus_ochrogaster
ENSMUSG00000030888	Rrp8	100	98.249	MGP_CAROLIEiJ_G0030236	Rrp8	100	98.249	Mus_caroli
ENSMUSG00000030888	Rrp8	100	96.499	MGP_PahariEiJ_G0013451	Rrp8	100	96.499	Mus_pahari
ENSMUSG00000030888	Rrp8	100	98.031	MGP_SPRETEiJ_G0031348	Rrp8	100	98.031	Mus_spretus
ENSMUSG00000030888	Rrp8	100	73.002	ENSMPUG00000005510	RRP8	100	73.650	Mustela_putorius_furo
ENSMUSG00000030888	Rrp8	100	76.856	ENSMLUG00000008938	RRP8	100	76.856	Myotis_lucifugus
ENSMUSG00000030888	Rrp8	100	80.963	ENSNGAG00000012450	Rrp8	100	80.963	Nannospalax_galili
ENSMUSG00000030888	Rrp8	56	52.140	ENSNBRG00000023416	rrp8	76	58.879	Neolamprologus_brichardi
ENSMUSG00000030888	Rrp8	100	74.017	ENSNLEG00000017445	RRP8	100	74.236	Nomascus_leucogenys
ENSMUSG00000030888	Rrp8	60	67.029	ENSMEUG00000004945	-	100	67.029	Notamacropus_eugenii
ENSMUSG00000030888	Rrp8	93	72.897	ENSOPRG00000008052	RRP8	100	71.522	Ochotona_princeps
ENSMUSG00000030888	Rrp8	100	73.970	ENSODEG00000011209	RRP8	100	73.970	Octodon_degus
ENSMUSG00000030888	Rrp8	100	75.055	ENSOCUG00000027619	RRP8	100	75.055	Oryctolagus_cuniculus
ENSMUSG00000030888	Rrp8	95	38.494	ENSORLG00000004175	rrp8	80	38.912	Oryzias_latipes
ENSMUSG00000030888	Rrp8	96	72.336	ENSOGAG00000007184	RRP8	100	72.429	Otolemur_garnettii
ENSMUSG00000030888	Rrp8	100	74.292	ENSOARG00000017435	RRP8	70	74.292	Ovis_aries
ENSMUSG00000030888	Rrp8	100	75.983	ENSPPAG00000040792	RRP8	100	76.201	Pan_paniscus
ENSMUSG00000030888	Rrp8	93	76.674	ENSPPRG00000022654	RRP8	100	75.216	Panthera_pardus
ENSMUSG00000030888	Rrp8	93	76.674	ENSPTIG00000011321	RRP8	100	75.216	Panthera_tigris_altaica
ENSMUSG00000030888	Rrp8	100	75.764	ENSPTRG00000003297	RRP8	100	75.983	Pan_troglodytes
ENSMUSG00000030888	Rrp8	100	74.672	ENSPANG00000006537	RRP8	100	74.672	Papio_anubis
ENSMUSG00000030888	Rrp8	100	87.965	ENSPEMG00000017257	Rrp8	100	87.965	Peromyscus_maniculatus_bairdii
ENSMUSG00000030888	Rrp8	100	75.764	ENSPPYG00000003538	RRP8	100	75.983	Pongo_abelii
ENSMUSG00000030888	Rrp8	100	70.217	ENSPCAG00000016176	RRP8	100	70.217	Procavia_capensis
ENSMUSG00000030888	Rrp8	100	74.891	ENSPCOG00000024627	RRP8	100	87.179	Propithecus_coquereli
ENSMUSG00000030888	Rrp8	100	74.617	ENSPVAG00000002420	RRP8	100	75.055	Pteropus_vampyrus
ENSMUSG00000030888	Rrp8	100	91.904	ENSRNOG00000018766	Rrp8	100	97.209	Rattus_norvegicus
ENSMUSG00000030888	Rrp8	100	74.454	ENSRBIG00000044485	RRP8	100	74.454	Rhinopithecus_bieti
ENSMUSG00000030888	Rrp8	100	74.017	ENSRROG00000045322	RRP8	100	74.017	Rhinopithecus_roxellana
ENSMUSG00000030888	Rrp8	58	33.887	YDR083W	-	59	37.768	Saccharomyces_cerevisiae
ENSMUSG00000030888	Rrp8	100	76.035	ENSSBOG00000035280	RRP8	100	76.471	Saimiri_boliviensis_boliviensis
ENSMUSG00000030888	Rrp8	96	53.892	ENSSHAG00000009273	-	96	54.691	Sarcophilus_harrisii
ENSMUSG00000030888	Rrp8	100	73.799	ENSSARG00000007949	RRP8	100	73.799	Sorex_araneus
ENSMUSG00000030888	Rrp8	64	51.689	ENSSPAG00000006664	rrp8	79	61.818	Stegastes_partitus
ENSMUSG00000030888	Rrp8	100	71.739	ENSSSCG00000023880	RRP8	100	71.739	Sus_scrofa
ENSMUSG00000030888	Rrp8	93	76.235	ENSTBEG00000000237	RRP8	100	76.706	Tupaia_belangeri
ENSMUSG00000030888	Rrp8	100	75.163	ENSTTRG00000004867	RRP8	100	75.163	Tursiops_truncatus
ENSMUSG00000030888	Rrp8	100	73.922	ENSUAMG00000025756	RRP8	100	74.569	Ursus_americanus
ENSMUSG00000030888	Rrp8	100	73.707	ENSUMAG00000000528	RRP8	96	74.353	Ursus_maritimus
ENSMUSG00000030888	Rrp8	100	73.593	ENSVPAG00000008019	RRP8	100	75.325	Vicugna_pacos
ENSMUSG00000030888	Rrp8	100	68.542	ENSVVUG00000024346	RRP8	99	72.707	Vulpes_vulpes
ENSMUSG00000030888	Rrp8	51	59.052	ENSXCOG00000006156	rrp8	61	59.052	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000183	chromatin silencing at rDNA	21873635.	IBA	Process
GO:0000183	chromatin silencing at rDNA	-	ISO	Process
GO:0005634	nucleus	-	ISO	Component
GO:0005677	chromatin silencing complex	21873635.	IBA	Component
GO:0005677	chromatin silencing complex	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0006364	rRNA processing	-	IEA	Process
GO:0008168	methyltransferase activity	-	IEA	Function
GO:0016740	transferase activity	-	IEA	Function
GO:0032259	methylation	-	IEA	Process
GO:0033553	rDNA heterochromatin	21873635.	IBA	Component
GO:0033553	rDNA heterochromatin	-	ISO	Component
GO:0035064	methylated histone binding	21873635.	IBA	Function
GO:0035064	methylated histone binding	-	ISO	Function
GO:0042149	cellular response to glucose starvation	21873635.	IBA	Process
GO:0042149	cellular response to glucose starvation	-	ISO	Process
GO:0046015	regulation of transcription by glucose	21873635.	IBA	Process
GO:0046015	regulation of transcription by glucose	-	ISO	Process
GO:0071158	positive regulation of cell cycle arrest	-	ISO	Process
GO:0072332	intrinsic apoptotic signaling pathway by p53 class mediator	-	ISO	Process