EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000030942 (Gene tree)
Gene ID: 233802
Gene Symbol: Thumpd1
Alias: 6330575P11Rik
Full Name: THUMP domain containing 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 5706 bases
Position: chr7:119715093-119720798
Accession: 2444479
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000033236	THUMP	PF02926.17	1.2e-23	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000033236	-	2689	XM_017322199	ENSMUSP00000033236	350 (aa)	XP_017177688	Q99J36
ENSMUST00000209175	-	744	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000030942's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000030942's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000030942	Thumpd1	100	83.853	ENSG00000066654	THUMPD1	100	83.853	Homo_sapiens
ENSMUSG00000030942	Thumpd1	77	57.455	ENSAPOG00000008440	thumpd1	85	59.846	Acanthochromis_polyacanthus
ENSMUSG00000030942	Thumpd1	100	84.078	ENSAMEG00000006257	THUMPD1	99	84.078	Ailuropoda_melanoleuca
ENSMUSG00000030942	Thumpd1	73	60.547	ENSACIG00000024395	thumpd1	76	60.784	Amphilophus_citrinellus
ENSMUSG00000030942	Thumpd1	79	55.830	ENSAOCG00000003509	thumpd1	84	56.537	Amphiprion_ocellaris
ENSMUSG00000030942	Thumpd1	79	55.830	ENSAPEG00000010515	thumpd1	85	56.537	Amphiprion_percula
ENSMUSG00000030942	Thumpd1	77	58.148	ENSATEG00000004737	thumpd1	83	58.148	Anabas_testudineus
ENSMUSG00000030942	Thumpd1	70	80.645	ENSAPLG00000015259	THUMPD1	87	81.452	Anas_platyrhynchos
ENSMUSG00000030942	Thumpd1	80	68.403	ENSACAG00000009625	-	88	70.833	Anolis_carolinensis
ENSMUSG00000030942	Thumpd1	100	66.856	ENSANAG00000027040	-	100	66.856	Aotus_nancymaae
ENSMUSG00000030942	Thumpd1	98	68.116	ENSANAG00000027311	-	99	68.421	Aotus_nancymaae
ENSMUSG00000030942	Thumpd1	100	82.436	ENSANAG00000026882	-	100	82.436	Aotus_nancymaae
ENSMUSG00000030942	Thumpd1	89	50.943	ENSACLG00000004830	thumpd1	95	52.500	Astatotilapia_calliptera
ENSMUSG00000030942	Thumpd1	92	54.079	ENSAMXG00000012356	thumpd1	98	54.079	Astyanax_mexicanus
ENSMUSG00000030942	Thumpd1	99	84.314	ENSBTAG00000047673	THUMPD1	100	84.314	Bos_taurus
ENSMUSG00000030942	Thumpd1	96	83.186	ENSCJAG00000009499	THUMPD1	100	82.153	Callithrix_jacchus
ENSMUSG00000030942	Thumpd1	100	84.034	ENSCAFG00000017985	THUMPD1	99	84.034	Canis_familiaris
ENSMUSG00000030942	Thumpd1	100	84.034	ENSCAFG00020021861	THUMPD1	99	84.034	Canis_lupus_dingo
ENSMUSG00000030942	Thumpd1	99	83.754	ENSCHIG00000010134	THUMPD1	99	83.754	Capra_hircus
ENSMUSG00000030942	Thumpd1	100	83.333	ENSTSYG00000011537	THUMPD1	100	83.333	Carlito_syrichta
ENSMUSG00000030942	Thumpd1	96	83.578	ENSCPOG00000008919	-	100	82.817	Cavia_porcellus
ENSMUSG00000030942	Thumpd1	96	83.578	ENSCPOG00000023684	-	100	82.817	Cavia_porcellus
ENSMUSG00000030942	Thumpd1	100	81.870	ENSCCAG00000030205	THUMPD1	100	81.870	Cebus_capucinus
ENSMUSG00000030942	Thumpd1	100	76.638	ENSCCAG00000019379	-	86	76.638	Cebus_capucinus
ENSMUSG00000030942	Thumpd1	100	83.003	ENSCATG00000040309	THUMPD1	100	83.003	Cercocebus_atys
ENSMUSG00000030942	Thumpd1	99	69.188	ENSCATG00000020844	-	99	69.188	Cercocebus_atys
ENSMUSG00000030942	Thumpd1	100	81.921	ENSCLAG00000016508	THUMPD1	100	81.921	Chinchilla_lanigera
ENSMUSG00000030942	Thumpd1	99	82.955	ENSCSAG00000007610	THUMPD1	99	82.955	Chlorocebus_sabaeus
ENSMUSG00000030942	Thumpd1	100	65.642	ENSCSAG00000009860	-	80	65.642	Chlorocebus_sabaeus
ENSMUSG00000030942	Thumpd1	100	82.682	ENSCHOG00000005587	THUMPD1	100	82.682	Choloepus_hoffmanni
ENSMUSG00000030942	Thumpd1	88	72.492	ENSCPBG00000019055	THUMPD1	87	72.492	Chrysemys_picta_bellii
ENSMUSG00000030942	Thumpd1	87	73.052	ENSCANG00000035822	-	100	73.052	Colobus_angolensis_palliatus
ENSMUSG00000030942	Thumpd1	87	76.144	ENSCANG00000038770	THUMPD1	100	76.144	Colobus_angolensis_palliatus
ENSMUSG00000030942	Thumpd1	100	89.235	ENSCGRG00001014829	Thumpd1	100	89.235	Cricetulus_griseus_chok1gshd
ENSMUSG00000030942	Thumpd1	100	89.235	ENSCGRG00000000060	Thumpd1	100	89.235	Cricetulus_griseus_crigri
ENSMUSG00000030942	Thumpd1	73	59.375	ENSCSEG00000002041	thumpd1	82	59.375	Cynoglossus_semilaevis
ENSMUSG00000030942	Thumpd1	73	62.646	ENSCVAG00000014960	thumpd1	98	54.206	Cyprinodon_variegatus
ENSMUSG00000030942	Thumpd1	70	58.964	ENSDARG00000100264	thumpd1	72	59.127	Danio_rerio
ENSMUSG00000030942	Thumpd1	100	83.799	ENSDNOG00000043510	THUMPD1	100	83.799	Dasypus_novemcinctus
ENSMUSG00000030942	Thumpd1	99	81.020	ENSDORG00000028216	Thumpd1	99	81.020	Dipodomys_ordii
ENSMUSG00000030942	Thumpd1	76	35.231	FBgn0035532	CG15014	86	33.770	Drosophila_melanogaster
ENSMUSG00000030942	Thumpd1	96	75.581	ENSETEG00000002763	THUMPD1	84	74.095	Echinops_telfairi
ENSMUSG00000030942	Thumpd1	77	42.806	ENSEBUG00000011011	THUMPD1	75	42.806	Eptatretus_burgeri
ENSMUSG00000030942	Thumpd1	54	74.619	ENSEASG00005017428	-	100	74.619	Equus_asinus_asinus
ENSMUSG00000030942	Thumpd1	100	81.006	ENSECAG00000005354	THUMPD1	100	81.006	Equus_caballus
ENSMUSG00000030942	Thumpd1	100	80.441	ENSEEUG00000011256	THUMPD1	88	80.992	Erinaceus_europaeus
ENSMUSG00000030942	Thumpd1	75	60.536	ENSELUG00000013612	thumpd1	61	62.069	Esox_lucius
ENSMUSG00000030942	Thumpd1	100	83.799	ENSFCAG00000039296	THUMPD1	100	83.799	Felis_catus
ENSMUSG00000030942	Thumpd1	65	81.223	ENSFALG00000014029	THUMPD1	82	82.096	Ficedula_albicollis
ENSMUSG00000030942	Thumpd1	73	58.301	ENSFHEG00000013319	thumpd1	74	58.915	Fundulus_heteroclitus
ENSMUSG00000030942	Thumpd1	73	63.529	ENSGMOG00000003369	thumpd1	80	63.529	Gadus_morhua
ENSMUSG00000030942	Thumpd1	82	55.517	ENSGAFG00000011000	thumpd1	90	55.862	Gambusia_affinis
ENSMUSG00000030942	Thumpd1	97	52.493	ENSGACG00000019511	thumpd1	97	52.493	Gasterosteus_aculeatus
ENSMUSG00000030942	Thumpd1	84	73.311	ENSGAGG00000008225	THUMPD1	92	73.311	Gopherus_agassizii
ENSMUSG00000030942	Thumpd1	100	83.569	ENSGGOG00000005231	-	80	83.569	Gorilla_gorilla
ENSMUSG00000030942	Thumpd1	85	66.107	ENSGGOG00000043232	-	100	60.227	Gorilla_gorilla
ENSMUSG00000030942	Thumpd1	73	58.621	ENSHBUG00000017996	thumpd1	95	52.188	Haplochromis_burtoni
ENSMUSG00000030942	Thumpd1	100	83.380	ENSHGLG00000011001	-	100	83.380	Heterocephalus_glaber_female
ENSMUSG00000030942	Thumpd1	59	72.512	ENSHGLG00000000952	-	98	72.512	Heterocephalus_glaber_female
ENSMUSG00000030942	Thumpd1	100	83.944	ENSHGLG00100016023	THUMPD1	100	83.944	Heterocephalus_glaber_male
ENSMUSG00000030942	Thumpd1	59	72.512	ENSHGLG00100010577	-	98	72.512	Heterocephalus_glaber_male
ENSMUSG00000030942	Thumpd1	66	55.128	ENSHCOG00000008618	thumpd1	74	45.783	Hippocampus_comes
ENSMUSG00000030942	Thumpd1	66	61.207	ENSIPUG00000012500	thumpd1	55	61.277	Ictalurus_punctatus
ENSMUSG00000030942	Thumpd1	100	85.028	ENSSTOG00000007011	THUMPD1	100	85.028	Ictidomys_tridecemlineatus
ENSMUSG00000030942	Thumpd1	100	82.768	ENSJJAG00000004295	-	100	82.768	Jaculus_jaculus
ENSMUSG00000030942	Thumpd1	73	53.232	ENSKMAG00000009545	thumpd1	88	45.455	Kryptolebias_marmoratus
ENSMUSG00000030942	Thumpd1	76	59.636	ENSLBEG00000009349	thumpd1	84	59.636	Labrus_bergylta
ENSMUSG00000030942	Thumpd1	74	67.361	ENSLACG00000005833	THUMPD1	88	62.422	Latimeria_chalumnae
ENSMUSG00000030942	Thumpd1	75	64.179	ENSLOCG00000000854	thumpd1	84	64.925	Lepisosteus_oculatus
ENSMUSG00000030942	Thumpd1	100	81.006	ENSLAFG00000025838	THUMPD1	100	81.006	Loxodonta_africana
ENSMUSG00000030942	Thumpd1	87	70.096	ENSMFAG00000041474	-	100	70.096	Macaca_fascicularis
ENSMUSG00000030942	Thumpd1	100	83.003	ENSMFAG00000036996	THUMPD1	100	83.003	Macaca_fascicularis
ENSMUSG00000030942	Thumpd1	87	69.775	ENSMMUG00000038414	-	100	69.775	Macaca_mulatta
ENSMUSG00000030942	Thumpd1	100	83.003	ENSMMUG00000004225	THUMPD1	100	83.003	Macaca_mulatta
ENSMUSG00000030942	Thumpd1	87	69.775	ENSMNEG00000038856	-	100	69.775	Macaca_nemestrina
ENSMUSG00000030942	Thumpd1	100	83.003	ENSMNEG00000020726	THUMPD1	100	83.003	Macaca_nemestrina
ENSMUSG00000030942	Thumpd1	87	70.227	ENSMLEG00000030012	-	99	70.227	Mandrillus_leucophaeus
ENSMUSG00000030942	Thumpd1	100	83.003	ENSMLEG00000036436	THUMPD1	100	83.003	Mandrillus_leucophaeus
ENSMUSG00000030942	Thumpd1	89	53.376	ENSMAMG00000006858	thumpd1	95	51.976	Mastacembelus_armatus
ENSMUSG00000030942	Thumpd1	73	58.621	ENSMZEG00005013693	thumpd1	95	52.188	Maylandia_zebra
ENSMUSG00000030942	Thumpd1	53	86.096	ENSMGAG00000010340	THUMPD1	91	86.096	Meleagris_gallopavo
ENSMUSG00000030942	Thumpd1	100	89.802	ENSMAUG00000013306	Thumpd1	100	89.802	Mesocricetus_auratus
ENSMUSG00000030942	Thumpd1	93	68.997	ENSMICG00000030865	-	90	68.997	Microcebus_murinus
ENSMUSG00000030942	Thumpd1	100	84.746	ENSMICG00000038483	-	100	84.746	Microcebus_murinus
ENSMUSG00000030942	Thumpd1	100	92.351	ENSMOCG00000003447	Thumpd1	100	92.351	Microtus_ochrogaster
ENSMUSG00000030942	Thumpd1	73	59.231	ENSMMOG00000011323	thumpd1	76	59.231	Mola_mola
ENSMUSG00000030942	Thumpd1	99	73.151	ENSMODG00000006971	-	98	74.247	Monodelphis_domestica
ENSMUSG00000030942	Thumpd1	99	72.603	ENSMODG00000024776	-	99	74.247	Monodelphis_domestica
ENSMUSG00000030942	Thumpd1	73	60.156	ENSMALG00000019522	thumpd1	85	57.934	Monopterus_albus
ENSMUSG00000030942	Thumpd1	100	98.000	MGP_CAROLIEiJ_G0030382	Thumpd1	100	98.000	Mus_caroli
ENSMUSG00000030942	Thumpd1	100	96.307	MGP_PahariEiJ_G0013593	Thumpd1	100	96.307	Mus_pahari
ENSMUSG00000030942	Thumpd1	89	82.188	ENSMLUG00000010547	THUMPD1	98	76.404	Myotis_lucifugus
ENSMUSG00000030942	Thumpd1	99	88.385	ENSNGAG00000018643	Thumpd1	100	88.385	Nannospalax_galili
ENSMUSG00000030942	Thumpd1	73	58.621	ENSNBRG00000006987	thumpd1	90	52.063	Neolamprologus_brichardi
ENSMUSG00000030942	Thumpd1	100	83.003	ENSNLEG00000012369	THUMPD1	100	83.003	Nomascus_leucogenys
ENSMUSG00000030942	Thumpd1	100	66.102	ENSOPRG00000011342	THUMPD1	86	66.102	Ochotona_princeps
ENSMUSG00000030942	Thumpd1	98	83.095	ENSODEG00000012360	THUMPD1	99	83.095	Octodon_degus
ENSMUSG00000030942	Thumpd1	73	58.621	ENSONIG00000000146	thumpd1	89	59.004	Oreochromis_niloticus
ENSMUSG00000030942	Thumpd1	96	67.898	ENSOANG00000014297	THUMPD1	97	67.898	Ornithorhynchus_anatinus
ENSMUSG00000030942	Thumpd1	97	83.768	ENSOCUG00000009895	-	97	83.768	Oryctolagus_cuniculus
ENSMUSG00000030942	Thumpd1	59	81.429	ENSOCUG00000025354	-	95	81.429	Oryctolagus_cuniculus
ENSMUSG00000030942	Thumpd1	69	61.983	ENSORLG00000027557	thumpd1	78	61.983	Oryzias_latipes
ENSMUSG00000030942	Thumpd1	69	61.570	ENSORLG00020010206	thumpd1	78	61.570	Oryzias_latipes_hni
ENSMUSG00000030942	Thumpd1	69	61.570	ENSORLG00015009581	thumpd1	78	61.570	Oryzias_latipes_hsok
ENSMUSG00000030942	Thumpd1	75	59.160	ENSOMEG00000019361	thumpd1	79	59.160	Oryzias_melastigma
ENSMUSG00000030942	Thumpd1	100	82.768	ENSOGAG00000026723	THUMPD1	100	82.768	Otolemur_garnettii
ENSMUSG00000030942	Thumpd1	99	84.314	ENSOARG00000013107	THUMPD1	99	84.314	Ovis_aries
ENSMUSG00000030942	Thumpd1	96	64.497	ENSPPAG00000001653	-	96	71.197	Pan_paniscus
ENSMUSG00000030942	Thumpd1	100	83.286	ENSPPAG00000033818	-	80	83.286	Pan_paniscus
ENSMUSG00000030942	Thumpd1	100	84.637	ENSPPRG00000014118	-	100	84.637	Panthera_pardus
ENSMUSG00000030942	Thumpd1	100	83.799	ENSPTIG00000013856	-	100	83.799	Panthera_tigris_altaica
ENSMUSG00000030942	Thumpd1	85	70.234	ENSPTRG00000046073	-	100	63.739	Pan_troglodytes
ENSMUSG00000030942	Thumpd1	100	83.003	ENSPTRG00000007848	THUMPD1	80	83.003	Pan_troglodytes
ENSMUSG00000030942	Thumpd1	87	70.323	ENSPANG00000034881	-	99	70.323	Papio_anubis
ENSMUSG00000030942	Thumpd1	100	83.003	ENSPANG00000025507	THUMPD1	100	83.003	Papio_anubis
ENSMUSG00000030942	Thumpd1	78	63.004	ENSPKIG00000014491	thumpd1	78	63.004	Paramormyrops_kingsleyae
ENSMUSG00000030942	Thumpd1	80	74.643	ENSPSIG00000012430	THUMPD1	97	74.643	Pelodiscus_sinensis
ENSMUSG00000030942	Thumpd1	73	60.853	ENSPMGG00000014479	thumpd1	88	61.240	Periophthalmus_magnuspinnatus
ENSMUSG00000030942	Thumpd1	66	72.222	ENSPEMG00000002608	-	100	72.222	Peromyscus_maniculatus_bairdii
ENSMUSG00000030942	Thumpd1	63	51.364	ENSPMAG00000001389	thumpd1	96	53.052	Petromyzon_marinus
ENSMUSG00000030942	Thumpd1	99	71.547	ENSPCIG00000029241	THUMPD1	72	72.652	Phascolarctos_cinereus
ENSMUSG00000030942	Thumpd1	88	53.271	ENSPFOG00000012649	thumpd1	98	53.583	Poecilia_formosa
ENSMUSG00000030942	Thumpd1	88	53.125	ENSPLAG00000000137	thumpd1	98	53.438	Poecilia_latipinna
ENSMUSG00000030942	Thumpd1	88	53.438	ENSPMEG00000007750	thumpd1	98	53.750	Poecilia_mexicana
ENSMUSG00000030942	Thumpd1	83	55.822	ENSPREG00000000144	thumpd1	95	56.164	Poecilia_reticulata
ENSMUSG00000030942	Thumpd1	78	82.609	ENSPPYG00000007160	-	100	82.609	Pongo_abelii
ENSMUSG00000030942	Thumpd1	78	77.305	ENSPCAG00000001534	THUMPD1	100	77.305	Procavia_capensis
ENSMUSG00000030942	Thumpd1	100	84.746	ENSPCOG00000024663	THUMPD1	100	84.746	Propithecus_coquereli
ENSMUSG00000030942	Thumpd1	61	69.643	ENSPVAG00000003286	-	99	69.643	Pteropus_vampyrus
ENSMUSG00000030942	Thumpd1	100	75.556	ENSPVAG00000005659	-	100	75.556	Pteropus_vampyrus
ENSMUSG00000030942	Thumpd1	73	58.621	ENSPNYG00000007061	thumpd1	94	52.188	Pundamilia_nyererei
ENSMUSG00000030942	Thumpd1	71	63.137	ENSPNAG00000024872	thumpd1	84	64.706	Pygocentrus_nattereri
ENSMUSG00000030942	Thumpd1	62	90.868	ENSRNOG00000014946	AABR07005588.1	100	90.868	Rattus_norvegicus
ENSMUSG00000030942	Thumpd1	100	83.003	ENSRBIG00000040752	THUMPD1	100	83.003	Rhinopithecus_bieti
ENSMUSG00000030942	Thumpd1	87	72.403	ENSRBIG00000040136	-	100	72.403	Rhinopithecus_bieti
ENSMUSG00000030942	Thumpd1	100	83.286	ENSRROG00000042189	THUMPD1	100	83.286	Rhinopithecus_roxellana
ENSMUSG00000030942	Thumpd1	87	72.078	ENSRROG00000045699	-	100	72.078	Rhinopithecus_roxellana
ENSMUSG00000030942	Thumpd1	100	81.870	ENSSBOG00000034246	THUMPD1	100	81.870	Saimiri_boliviensis_boliviensis
ENSMUSG00000030942	Thumpd1	99	74.167	ENSSHAG00000003853	THUMPD1	99	74.167	Sarcophilus_harrisii
ENSMUSG00000030942	Thumpd1	74	55.000	ENSSFOG00015007512	thumpd1	91	49.379	Scleropages_formosus
ENSMUSG00000030942	Thumpd1	90	52.866	ENSSMAG00000000723	thumpd1	91	52.866	Scophthalmus_maximus
ENSMUSG00000030942	Thumpd1	83	54.795	ENSSDUG00000014502	thumpd1	89	56.463	Seriola_dumerili
ENSMUSG00000030942	Thumpd1	83	55.137	ENSSLDG00000007694	thumpd1	89	56.803	Seriola_lalandi_dorsalis
ENSMUSG00000030942	Thumpd1	75	78.571	ENSSPUG00000005096	THUMPD1	80	79.699	Sphenodon_punctatus
ENSMUSG00000030942	Thumpd1	85	54.667	ENSSPAG00000006993	thumpd1	91	54.934	Stegastes_partitus
ENSMUSG00000030942	Thumpd1	100	83.287	ENSSSCG00000024748	THUMPD1	100	83.287	Sus_scrofa
ENSMUSG00000030942	Thumpd1	69	80.408	ENSTGUG00000009247	THUMPD1	89	81.224	Taeniopygia_guttata
ENSMUSG00000030942	Thumpd1	73	60.311	ENSTRUG00000015656	thumpd1	79	60.700	Takifugu_rubripes
ENSMUSG00000030942	Thumpd1	85	55.000	ENSTNIG00000001584	thumpd1	96	55.333	Tetraodon_nigroviridis
ENSMUSG00000030942	Thumpd1	100	82.486	ENSTBEG00000005252	THUMPD1	88	82.486	Tupaia_belangeri
ENSMUSG00000030942	Thumpd1	100	84.078	ENSTTRG00000016435	THUMPD1	100	84.078	Tursiops_truncatus
ENSMUSG00000030942	Thumpd1	62	71.429	ENSUAMG00000005779	-	100	71.429	Ursus_americanus
ENSMUSG00000030942	Thumpd1	100	81.844	ENSVPAG00000003422	THUMPD1	100	81.844	Vicugna_pacos
ENSMUSG00000030942	Thumpd1	100	83.754	ENSVVUG00000023241	THUMPD1	99	83.754	Vulpes_vulpes
ENSMUSG00000030942	Thumpd1	79	61.594	ENSXETG00000005539	thumpd1	93	61.818	Xenopus_tropicalis
ENSMUSG00000030942	Thumpd1	73	59.922	ENSXMAG00000026052	thumpd1	80	60.311	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0006400	tRNA modification	21873635.	IBA	Process