EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000031060 (Gene tree)
Gene ID: 236732
Gene Symbol: Rbm10
Alias: E430039K10Rik
Full Name: RNA binding motif protein 10
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 33399 bases
Position: chrX:20617503-20650901
Accession: 2384310
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000080738	zf-RanBP	PF00641.18	2.5e-06	1	1
ENSMUSP00000111031	zf-RanBP	PF00641.18	2.5e-06	1	1
ENSMUSP00000111033	zf-RanBP	PF00641.18	2.8e-06	1	1
ENSMUSP00000136209	zf-RanBP	PF00641.18	2.8e-06	1	1
ENSMUSP00000068188	zf-RanBP	PF00641.18	2.8e-06	1	1
ENSMUSP00000111032	zf-RanBP	PF00641.18	2.8e-06	1	1
ENSMUSP00000111033	RRM_1	PF00076.22	9.5e-13	1	1
ENSMUSP00000136209	RRM_1	PF00076.22	9.5e-13	1	1
ENSMUSP00000068188	RRM_1	PF00076.22	1.2e-12	1	1
ENSMUSP00000111032	RRM_1	PF00076.22	1.2e-12	1	1
ENSMUSP00000080738	RRM_1	PF00076.22	1.1e-09	1	1
ENSMUSP00000111031	RRM_1	PF00076.22	1.1e-09	1	1
ENSMUSP00000080738	G-patch	PF01585.23	2.6e-18	1	1
ENSMUSP00000111031	G-patch	PF01585.23	2.6e-18	1	1
ENSMUSP00000111033	G-patch	PF01585.23	2.8e-18	1	1
ENSMUSP00000136209	G-patch	PF01585.23	2.8e-18	1	1
ENSMUSP00000068188	G-patch	PF01585.23	2.8e-18	1	1
ENSMUSP00000111032	G-patch	PF01585.23	2.8e-18	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000141128	-	2160	-	-	- (aa)	-	-
ENSMUST00000115374	-	3564	-	ENSMUSP00000111032	930 (aa)	-	Q99KG3
ENSMUST00000115375	-	3698	XM_006527618	ENSMUSP00000111033	929 (aa)	XP_006527681	Q99KG3
ENSMUST00000084383	-	3172	XM_006527619	ENSMUSP00000111031	853 (aa)	XP_006527684	Q99KG3
ENSMUST00000064911	-	2793	-	ENSMUSP00000068188	930 (aa)	-	Q99KG3
ENSMUST00000082089	-	2562	-	ENSMUSP00000080738	853 (aa)	-	Q99KG3
ENSMUST00000177738	-	2790	-	ENSMUSP00000136209	929 (aa)	-	Q99KG3

Gene Model

Click here to download ENSMUSG00000031060's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000031060's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000031060	Rbm10	98	51.294	ENSMUSG00000032580	Rbm5	88	69.784

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000031060	Rbm10	100	97.015	ENSG00000182872	RBM10	100	97.015	Homo_sapiens
ENSMUSG00000031060	Rbm10	90	50.939	ENSAPOG00000018220	rbm10	77	53.474	Acanthochromis_polyacanthus
ENSMUSG00000031060	Rbm10	100	97.015	ENSAMEG00000012961	RBM10	93	94.099	Ailuropoda_melanoleuca
ENSMUSG00000031060	Rbm10	72	59.467	ENSACIG00000013859	rbm10	96	62.147	Amphilophus_citrinellus
ENSMUSG00000031060	Rbm10	79	55.021	ENSAOCG00000022677	rbm10	76	55.989	Amphiprion_ocellaris
ENSMUSG00000031060	Rbm10	90	52.638	ENSAPEG00000005675	rbm10	77	53.532	Amphiprion_percula
ENSMUSG00000031060	Rbm10	93	57.447	ENSATEG00000023522	rbm10	78	53.077	Anabas_testudineus
ENSMUSG00000031060	Rbm10	99	75.104	ENSACAG00000005527	RBM10	99	76.250	Anolis_carolinensis
ENSMUSG00000031060	Rbm10	100	97.015	ENSANAG00000026392	-	98	96.000	Aotus_nancymaae
ENSMUSG00000031060	Rbm10	97	90.769	ENSANAG00000033026	-	100	90.769	Aotus_nancymaae
ENSMUSG00000031060	Rbm10	92	49.703	ENSACLG00000008773	rbm10	78	52.015	Astatotilapia_calliptera
ENSMUSG00000031060	Rbm10	100	98.507	ENSBTAG00000002890	RBM10	100	98.507	Bos_taurus
ENSMUSG00000031060	Rbm10	100	97.015	ENSCJAG00000012101	RBM10	93	95.811	Callithrix_jacchus
ENSMUSG00000031060	Rbm10	100	97.015	ENSCAFG00000014863	RBM10	99	95.046	Canis_familiaris
ENSMUSG00000031060	Rbm10	100	97.015	ENSCAFG00020021417	RBM10	87	97.015	Canis_lupus_dingo
ENSMUSG00000031060	Rbm10	99	95.455	ENSCHIG00000000855	RBM10	98	98.000	Capra_hircus
ENSMUSG00000031060	Rbm10	100	97.015	ENSTSYG00000030341	RBM10	100	97.015	Carlito_syrichta
ENSMUSG00000031060	Rbm10	79	98.746	ENSCAPG00000013182	RBM10	95	98.746	Cavia_aperea
ENSMUSG00000031060	Rbm10	100	96.344	ENSCPOG00000002939	RBM10	100	96.344	Cavia_porcellus
ENSMUSG00000031060	Rbm10	100	97.015	ENSCCAG00000025788	RBM10	100	97.015	Cebus_capucinus
ENSMUSG00000031060	Rbm10	100	97.015	ENSCATG00000018553	RBM10	100	97.015	Cercocebus_atys
ENSMUSG00000031060	Rbm10	100	96.026	ENSCLAG00000001238	RBM10	100	96.026	Chinchilla_lanigera
ENSMUSG00000031060	Rbm10	100	97.015	ENSCSAG00000013744	RBM10	93	96.026	Chlorocebus_sabaeus
ENSMUSG00000031060	Rbm10	85	76.027	ENSCPBG00000000458	RBM10	96	77.568	Chrysemys_picta_bellii
ENSMUSG00000031060	Rbm10	100	97.015	ENSCANG00000000359	RBM10	100	97.015	Colobus_angolensis_palliatus
ENSMUSG00000031060	Rbm10	100	97.538	ENSCGRG00001017158	Rbm10	100	97.538	Cricetulus_griseus_chok1gshd
ENSMUSG00000031060	Rbm10	100	97.538	ENSCGRG00000011339	Rbm10	100	97.538	Cricetulus_griseus_crigri
ENSMUSG00000031060	Rbm10	92	52.146	ENSCVAG00000009548	rbm10	77	53.257	Cyprinodon_variegatus
ENSMUSG00000031060	Rbm10	82	57.546	ENSDARG00000077400	rbm10	100	71.898	Danio_rerio
ENSMUSG00000031060	Rbm10	70	94.487	ENSDNOG00000031259	RBM10	96	94.334	Dasypus_novemcinctus
ENSMUSG00000031060	Rbm10	100	96.133	ENSDORG00000015022	Rbm10	100	96.133	Dipodomys_ordii
ENSMUSG00000031060	Rbm10	99	89.848	ENSETEG00000003131	RBM10	90	89.848	Echinops_telfairi
ENSMUSG00000031060	Rbm10	96	95.082	ENSEASG00005014310	RBM10	97	94.000	Equus_asinus_asinus
ENSMUSG00000031060	Rbm10	100	97.015	ENSECAG00000000287	RBM10	97	96.000	Equus_caballus
ENSMUSG00000031060	Rbm10	53	97.133	ENSEEUG00000008271	-	53	97.133	Erinaceus_europaeus
ENSMUSG00000031060	Rbm10	86	50.882	ENSELUG00000019845	rbm10	98	48.548	Esox_lucius
ENSMUSG00000031060	Rbm10	100	95.596	ENSFCAG00000001395	RBM10	100	95.522	Felis_catus
ENSMUSG00000031060	Rbm10	100	96.885	ENSFDAG00000002328	RBM10	100	96.885	Fukomys_damarensis
ENSMUSG00000031060	Rbm10	86	54.485	ENSFHEG00000021050	rbm10	79	53.299	Fundulus_heteroclitus
ENSMUSG00000031060	Rbm10	59	55.186	ENSGMOG00000011093	rbm10	100	56.164	Gadus_morhua
ENSMUSG00000031060	Rbm10	59	52.239	ENSGACG00000009953	rbm10	100	54.894	Gasterosteus_aculeatus
ENSMUSG00000031060	Rbm10	100	78.059	ENSGAGG00000001747	RBM10	100	78.059	Gopherus_agassizii
ENSMUSG00000031060	Rbm10	100	97.015	ENSGGOG00000007869	RBM10	98	96.000	Gorilla_gorilla
ENSMUSG00000031060	Rbm10	92	49.584	ENSHBUG00000000175	rbm10	78	52.137	Haplochromis_burtoni
ENSMUSG00000031060	Rbm10	100	95.704	ENSHGLG00000000890	RBM10	100	95.704	Heterocephalus_glaber_female
ENSMUSG00000031060	Rbm10	99	94.737	ENSHGLG00100001369	RBM10	99	93.457	Heterocephalus_glaber_male
ENSMUSG00000031060	Rbm10	90	48.805	ENSHCOG00000002211	rbm10	78	49.256	Hippocampus_comes
ENSMUSG00000031060	Rbm10	77	61.329	ENSIPUG00000014280	rbm10	95	48.056	Ictalurus_punctatus
ENSMUSG00000031060	Rbm10	100	97.015	ENSSTOG00000014369	RBM10	100	97.015	Ictidomys_tridecemlineatus
ENSMUSG00000031060	Rbm10	100	97.015	ENSJJAG00000014158	Rbm10	100	96.774	Jaculus_jaculus
ENSMUSG00000031060	Rbm10	92	50.909	ENSKMAG00000019926	rbm10	77	52.035	Kryptolebias_marmoratus
ENSMUSG00000031060	Rbm10	90	51.314	ENSLBEG00000007620	rbm10	77	52.109	Labrus_bergylta
ENSMUSG00000031060	Rbm10	99	64.169	ENSLACG00000005251	RBM10	99	62.696	Latimeria_chalumnae
ENSMUSG00000031060	Rbm10	82	57.854	ENSLOCG00000014304	rbm10	97	58.015	Lepisosteus_oculatus
ENSMUSG00000031060	Rbm10	98	96.000	ENSLAFG00000002900	RBM10	98	96.000	Loxodonta_africana
ENSMUSG00000031060	Rbm10	100	97.015	ENSMFAG00000032405	RBM10	100	97.015	Macaca_fascicularis
ENSMUSG00000031060	Rbm10	100	97.015	ENSMMUG00000017423	RBM10	100	97.015	Macaca_mulatta
ENSMUSG00000031060	Rbm10	100	97.015	ENSMNEG00000038904	RBM10	100	97.015	Macaca_nemestrina
ENSMUSG00000031060	Rbm10	100	97.015	ENSMLEG00000042685	RBM10	100	97.015	Mandrillus_leucophaeus
ENSMUSG00000031060	Rbm10	90	51.253	ENSMAMG00000008925	rbm10	77	51.673	Mastacembelus_armatus
ENSMUSG00000031060	Rbm10	92	49.703	ENSMZEG00005027122	rbm10	78	51.893	Maylandia_zebra
ENSMUSG00000031060	Rbm10	100	98.124	ENSMAUG00000011595	Rbm10	100	98.124	Mesocricetus_auratus
ENSMUSG00000031060	Rbm10	100	98.507	ENSMICG00000016937	RBM10	100	98.507	Microcebus_murinus
ENSMUSG00000031060	Rbm10	100	97.967	ENSMOCG00000022485	Rbm10	100	97.425	Microtus_ochrogaster
ENSMUSG00000031060	Rbm10	91	81.649	ENSMODG00000010640	RBM10	97	81.998	Monodelphis_domestica
ENSMUSG00000031060	Rbm10	90	49.816	ENSMALG00000011917	rbm10	77	51.092	Monopterus_albus
ENSMUSG00000031060	Rbm10	100	100.000	MGP_CAROLIEiJ_G0032963	Rbm10	100	100.000	Mus_caroli
ENSMUSG00000031060	Rbm10	100	98.828	MGP_PahariEiJ_G0031506	Rbm10	100	98.828	Mus_pahari
ENSMUSG00000031060	Rbm10	100	100.000	MGP_SPRETEiJ_G0034113	Rbm10	100	100.000	Mus_spretus
ENSMUSG00000031060	Rbm10	100	97.015	ENSMPUG00000013129	RBM10	88	95.059	Mustela_putorius_furo
ENSMUSG00000031060	Rbm10	66	88.007	ENSMLUG00000013095	RBM10	100	88.007	Myotis_lucifugus
ENSMUSG00000031060	Rbm10	100	97.538	ENSNGAG00000019664	Rbm10	100	97.538	Nannospalax_galili
ENSMUSG00000031060	Rbm10	96	97.351	ENSNLEG00000003018	RBM10	100	97.333	Nomascus_leucogenys
ENSMUSG00000031060	Rbm10	87	84.122	ENSMEUG00000009028	RBM10	86	83.509	Notamacropus_eugenii
ENSMUSG00000031060	Rbm10	50	98.148	ENSOPRG00000005550	-	50	98.148	Ochotona_princeps
ENSMUSG00000031060	Rbm10	100	96.452	ENSODEG00000008955	RBM10	100	96.452	Octodon_degus
ENSMUSG00000031060	Rbm10	86	52.810	ENSONIG00000012370	rbm10	99	52.348	Oreochromis_niloticus
ENSMUSG00000031060	Rbm10	100	85.294	ENSOANG00000004552	RBM10	97	85.294	Ornithorhynchus_anatinus
ENSMUSG00000031060	Rbm10	100	95.522	ENSOCUG00000006454	RBM10	100	93.676	Oryctolagus_cuniculus
ENSMUSG00000031060	Rbm10	85	51.459	ENSORLG00000008657	rbm10	77	50.371	Oryzias_latipes
ENSMUSG00000031060	Rbm10	85	51.326	ENSORLG00020004636	rbm10	77	50.248	Oryzias_latipes_hni
ENSMUSG00000031060	Rbm10	85	51.398	ENSORLG00015021021	rbm10	76	50.378	Oryzias_latipes_hsok
ENSMUSG00000031060	Rbm10	85	50.132	ENSOMEG00000014309	rbm10	78	49.134	Oryzias_melastigma
ENSMUSG00000031060	Rbm10	100	98.507	ENSOGAG00000008550	RBM10	93	95.918	Otolemur_garnettii
ENSMUSG00000031060	Rbm10	100	98.507	ENSOARG00000013674	RBM10	86	98.507	Ovis_aries
ENSMUSG00000031060	Rbm10	100	97.015	ENSPPAG00000040583	RBM10	100	97.015	Pan_paniscus
ENSMUSG00000031060	Rbm10	100	95.522	ENSPPRG00000023784	RBM10	100	95.522	Panthera_pardus
ENSMUSG00000031060	Rbm10	84	96.765	ENSPTIG00000017219	RBM10	92	97.534	Panthera_tigris_altaica
ENSMUSG00000031060	Rbm10	100	97.015	ENSPTRG00000021837	RBM10	98	96.000	Pan_troglodytes
ENSMUSG00000031060	Rbm10	100	97.015	ENSPANG00000013608	RBM10	100	91.614	Papio_anubis
ENSMUSG00000031060	Rbm10	81	56.421	ENSPKIG00000007372	rbm10	99	54.111	Paramormyrops_kingsleyae
ENSMUSG00000031060	Rbm10	100	98.507	ENSPEMG00000012165	Rbm10	100	98.507	Peromyscus_maniculatus_bairdii
ENSMUSG00000031060	Rbm10	100	83.422	ENSPCIG00000027962	RBM10	100	83.422	Phascolarctos_cinereus
ENSMUSG00000031060	Rbm10	82	51.990	ENSPFOG00000005428	rbm10	97	52.625	Poecilia_formosa
ENSMUSG00000031060	Rbm10	93	51.471	ENSPLAG00000013887	rbm10	77	52.471	Poecilia_latipinna
ENSMUSG00000031060	Rbm10	93	50.549	ENSPMEG00000005032	rbm10	77	52.725	Poecilia_mexicana
ENSMUSG00000031060	Rbm10	93	51.779	ENSPREG00000019319	rbm10	81	53.485	Poecilia_reticulata
ENSMUSG00000031060	Rbm10	100	97.015	ENSPPYG00000020285	RBM10	100	91.407	Pongo_abelii
ENSMUSG00000031060	Rbm10	93	87.067	ENSPCAG00000000239	RBM10	93	87.875	Procavia_capensis
ENSMUSG00000031060	Rbm10	100	97.015	ENSPCOG00000023562	RBM10	100	97.015	Propithecus_coquereli
ENSMUSG00000031060	Rbm10	79	98.507	ENSPVAG00000006787	RBM10	80	98.507	Pteropus_vampyrus
ENSMUSG00000031060	Rbm10	92	49.584	ENSPNYG00000015230	rbm10	78	52.137	Pundamilia_nyererei
ENSMUSG00000031060	Rbm10	81	57.264	ENSPNAG00000011074	rbm10	77	56.876	Pygocentrus_nattereri
ENSMUSG00000031060	Rbm10	100	98.507	ENSRNOG00000008472	Rbm10	100	98.507	Rattus_norvegicus
ENSMUSG00000031060	Rbm10	100	97.015	ENSRBIG00000040371	RBM10	100	97.015	Rhinopithecus_bieti
ENSMUSG00000031060	Rbm10	100	97.015	ENSRROG00000043355	RBM10	100	97.015	Rhinopithecus_roxellana
ENSMUSG00000031060	Rbm10	100	97.015	ENSSBOG00000022873	RBM10	100	97.015	Saimiri_boliviensis_boliviensis
ENSMUSG00000031060	Rbm10	100	82.609	ENSSHAG00000007724	-	94	82.609	Sarcophilus_harrisii
ENSMUSG00000031060	Rbm10	86	56.283	ENSSFOG00015010701	rbm10	76	55.283	Scleropages_formosus
ENSMUSG00000031060	Rbm10	86	52.089	ENSSMAG00000006556	rbm10	77	50.927	Scophthalmus_maximus
ENSMUSG00000031060	Rbm10	90	51.244	ENSSLDG00000001390	rbm10	77	52.104	Seriola_lalandi_dorsalis
ENSMUSG00000031060	Rbm10	97	95.522	ENSSARG00000014122	RBM10	89	95.522	Sorex_araneus
ENSMUSG00000031060	Rbm10	60	81.879	ENSSPUG00000006952	RBM10	89	81.879	Sphenodon_punctatus
ENSMUSG00000031060	Rbm10	85	49.597	ENSSPAG00000004647	rbm10	93	48.843	Stegastes_partitus
ENSMUSG00000031060	Rbm10	98	95.628	ENSSSCG00000012271	RBM10	98	95.628	Sus_scrofa
ENSMUSG00000031060	Rbm10	93	53.191	ENSTRUG00000010215	rbm10	79	51.298	Takifugu_rubripes
ENSMUSG00000031060	Rbm10	94	50.829	ENSTNIG00000015014	rbm10	98	51.139	Tetraodon_nigroviridis
ENSMUSG00000031060	Rbm10	74	93.981	ENSTBEG00000005519	RBM10	80	93.981	Tupaia_belangeri
ENSMUSG00000031060	Rbm10	100	92.811	ENSTTRG00000013653	RBM10	100	92.811	Tursiops_truncatus
ENSMUSG00000031060	Rbm10	96	96.721	ENSUAMG00000026047	RBM10	98	96.000	Ursus_americanus
ENSMUSG00000031060	Rbm10	100	95.522	ENSVVUG00000014315	RBM10	100	93.133	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	19508861.	IDA	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	-	IEA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0008285	negative regulation of cell proliferation	19508861.	IDA	Process
GO:0008285	negative regulation of cell proliferation	19508861.	IGI	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016607	nuclear speck	-	ISO	Component
GO:0032991	protein-containing complex	-	ISO	Component
GO:0034391	regulation of smooth muscle cell apoptotic process	19508861.	IGI	Process
GO:0034393	positive regulation of smooth muscle cell apoptotic process	19508861.	IDA	Process
GO:0035198	miRNA binding	-	ISO	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0042981	regulation of apoptotic process	-	IEA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0048025	negative regulation of mRNA splicing, via spliceosome	23636947.	IMP	Process
GO:0070935	3'-UTR-mediated mRNA stabilization	19508861.	IDA	Process