EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000031078 (Gene tree)
Gene ID: 13043
Gene Symbol: Cttn
Alias: 1110020L01Rik|Ems1
Full Name: cortactin
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 35277
Position: chr7: 144435733-144471009
Accession: 99695
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000103079	-	3286	XM_006508474	ENSMUSP00000099368	546 (aa)	XP_006508537	Q60598
ENSMUST00000126018	-	336	-	-	- (aa)	-	-
ENSMUST00000157079	-	600	-	-	- (aa)	-	-
ENSMUST00000134131	-	598	-	-	- (aa)	-	-
ENSMUST00000150607	-	362	-	-	- (aa)	-	-
ENSMUST00000148778	-	462	-	-	- (aa)	-	-
ENSMUST00000033407	-	2913	XM_006508473	ENSMUSP00000033407	509 (aa)	XP_006508538	Q921L6

Gene Model

Click here to download ENSMUSG00000031078's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04530	Tight junction	KEGG
mmu05100	Bacterial invasion of epithelial cells	KEGG
mmu05205	Proteoglycans in cancer	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000031078's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000031078	Cttn	100	92.182	ENSG00000085733	CTTN	100	92.182	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001726	ruffle	10637315.12913069.	IDA	Component
GO:0002102	podosome	17893324.	IDA	Component
GO:0005515	protein binding	11018051.11018064.11231575.12620186.12732638.12913069.15169891.15585574.15688017.17065230.17318189.17576929.17606906.17959782.19414610.19704022.21847094.22252131.22282019.	IPI	Function
GO:0005522	profilin binding	-	ISO	Function
GO:0005737	cytoplasm	12913069.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005884	actin filament	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0005905	clathrin-coated pit	-	ISO	Component
GO:0005925	focal adhesion	-	ISO	Component
GO:0005938	cell cortex	12913069.	IDA	Component
GO:0005938	cell cortex	-	ISO	Component
GO:0006886	intracellular protein transport	17959782.	IMP	Process
GO:0006886	intracellular protein transport	-	ISO	Process
GO:0006897	endocytosis	-	IEA	Process
GO:0006898	receptor-mediated endocytosis	-	ISO	Process
GO:0006930	substrate-dependent cell migration, cell extension	19414610.	IGI	Process
GO:0008076	voltage-gated potassium channel complex	17959782.	IDA	Component
GO:0008076	voltage-gated potassium channel complex	-	ISO	Component
GO:0016020	membrane	-	IEA	Component
GO:0030027	lamellipodium	12853475.12913069.19414610.	IDA	Component
GO:0030027	lamellipodium	-	ISO	Component
GO:0030041	actin filament polymerization	-	IEA	Process
GO:0030054	cell junction	-	ISO	Component
GO:0030426	growth cone	-	ISO	Component
GO:0030516	regulation of axon extension	-	ISO	Process
GO:0030838	positive regulation of actin filament polymerization	-	ISO	Process
GO:0030863	cortical cytoskeleton	-	ISO	Component
GO:0031532	actin cytoskeleton reorganization	-	ISO	Process
GO:0042995	cell projection	-	IEA	Component
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0045987	positive regulation of smooth muscle contraction	-	ISO	Process
GO:0048041	focal adhesion assembly	-	ISO	Process
GO:0048812	neuron projection morphogenesis	-	ISO	Process
GO:0048870	cell motility	-	ISO	Process
GO:0070064	proline-rich region binding	-	ISO	Function
GO:0071933	Arp2/3 complex binding	-	ISO	Function
GO:0097062	dendritic spine maintenance	23365224.	IGI	Process
GO:0097581	lamellipodium organization	-	ISO	Process
GO:0098871	postsynaptic actin cytoskeleton	-	ISO	Component
GO:0098885	modification of postsynaptic actin cytoskeleton	-	ISO	Process
GO:0098978	glutamatergic synapse	-	ISO	Component
GO:1903146	regulation of autophagy of mitochondrion	20457763.	IMP	Process
GO:1990023	mitotic spindle midzone	22282019.	IDA	Component
GO:2001237	negative regulation of extrinsic apoptotic signaling pathway	22660580.	IGI	Process