EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000031095 (Gene tree)
Gene ID: 72584
Gene Symbol: Cul4b
Alias: 2700050M05Rik
Full Name: cullin 4B
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 42923
Position: chrX: 38533274-38576196
Accession: 1919834
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000147129	-	3103	-	ENSMUSP00000136083	552 (aa)	-	J3QJX0
ENSMUST00000115118	-	3344	-	ENSMUSP00000110771	970 (aa)	-	A2A432
ENSMUST00000050083	-	3090	-	ENSMUSP00000059276	970 (aa)	-	A2A432
ENSMUST00000016681	-	3354	-	ENSMUSP00000016681	896 (aa)	-	E9PXY1

Gene Model

Click here to download ENSMUSG00000031095's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03420	Nucleotide excision repair	KEGG
mmu04120	Ubiquitin mediated proteolysis	KEGG
mmu05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000031095's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000031095	Cul4b	100	97.442	ENSG00000158290	CUL4B	100	97.442	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003684	damaged DNA binding	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006511	ubiquitin-dependent protein catabolic process	21873635.	IBA	Process
GO:0006974	cellular response to DNA damage stimulus	21873635.	IBA	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0010498	proteasomal protein catabolic process	25970626.	ISO	Process
GO:0016567	protein ubiquitination	-	ISO	Process
GO:0019005	SCF ubiquitin ligase complex	21873635.	IBA	Component
GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	21873635.	IBA	Process
GO:0031175	neuron projection development	-	ISO	Process
GO:0031461	cullin-RING ubiquitin ligase complex	21873635.	IBA	Component
GO:0031465	Cul4B-RING E3 ubiquitin ligase complex	21873635.	IBA	Component
GO:0031465	Cul4B-RING E3 ubiquitin ligase complex	-	ISO	Component
GO:0031625	ubiquitin protein ligase binding	21873635.	IBA	Function
GO:0035518	histone H2A monoubiquitination	-	ISO	Process
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	21873635.	IBA	Process
GO:0045732	positive regulation of protein catabolic process	18602923.	IMP	Process
GO:0061630	ubiquitin protein ligase activity	21873635.	IBA	Function
GO:0070914	UV-damage excision repair	-	ISO	Process
GO:0080008	Cul4-RING E3 ubiquitin ligase complex	21873635.	IBA	Component
GO:0080008	Cul4-RING E3 ubiquitin ligase complex	-	ISO	Component
GO:1900087	positive regulation of G1/S transition of mitotic cell cycle	19056892.	IMP	Process