EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000031099 (Gene tree)
Gene ID
93761
Gene Symbol
Smarca1
Alias
5730494M04Rik|Snf2l
Full Name
SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type
protein_coding
Species
Mus_musculus
Status
putative
Strand
Minus strand
Length
83607 bases
Position
chrX:47809368-47892974
Accession
1935127
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000135570ResIIIPF04851.155.6e-1211
ENSMUSP00000114296ResIIIPF04851.151.4e-1111
ENSMUSP00000099138ResIIIPF04851.152.3e-1111
ENSMUSP00000076769ResIIIPF04851.152.4e-1111
ENSMUSP00000086366ResIIIPF04851.152.4e-1111
ENSMUSP00000076769DEADPF00270.291.6e-0611
ENSMUSP00000086366DEADPF00270.291.6e-0611
ENSMUSP00000099138DEADPF00270.291.7e-0611
ENSMUSP00000135570DEADPF00270.293e-0611
ENSMUSP00000114296DEADPF00270.294.2e-0611
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000101616-3991XM_006541563ENSMUSP000000991381062 (aa)-Q6PGB8
ENSMUST00000153548-2304-ENSMUSP00000114296768 (aa)-F6Z6F4
ENSMUST00000088973-4798-ENSMUSP000000863661046 (aa)-Q6PGB8
ENSMUST00000141084-1965-ENSMUSP00000135570381 (aa)-Q8BS67
ENSMUST00000140756-409--- (aa)--
ENSMUST00000077569-4024XM_017318646ENSMUSP000000767691046 (aa)XP_017174135Q6PGB8
ENSMUST00000153587-360-ENSMUSP00000116209117 (aa)-F6QS43
Gene Model
Click here to download ENSMUSG00000031099's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000031099's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000031099Smarca17240.306ENSMUSG00000056608Chd95743.687
ENSMUSG00000031099Smarca17245.247ENSMUSG00000025001Hells6547.410
ENSMUSG00000031099Smarca17242.708ENSMUSG00000023852Chd15044.322
ENSMUSG00000031099Smarca16831.488ENSMUSG00000078773Rad54b6631.229
ENSMUSG00000031099Smarca16132.031ENSMUSG00000028702Rad54l6633.267
ENSMUSG00000031099Smarca17130.174ENSMUSG00000021470Ercc6l27930.353
ENSMUSG00000031099Smarca17542.044ENSMUSG00000028089Chd1l6243.419
ENSMUSG00000031099Smarca19384.280ENSMUSG00000031715Smarca59384.280
ENSMUSG00000031099Smarca16543.691ENSMUSG00000024921Smarca26740.260
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000031099Smarca110095.861ENSG00000102038SMARCA110095.861Homo_sapiens
ENSMUSG00000031099Smarca19282.263ENSAPOG00000016035smarca59883.370Acanthochromis_polyacanthus
ENSMUSG00000031099Smarca110093.767ENSAMEG00000015218SMARCA110093.953Ailuropoda_melanoleuca
ENSMUSG00000031099Smarca18583.278ENSACIG00000016982smarca59983.371Amphilophus_citrinellus
ENSMUSG00000031099Smarca19282.263ENSAOCG00000015578smarca59581.307Amphiprion_ocellaris
ENSMUSG00000031099Smarca19282.263ENSAPEG00000011117smarca59983.373Amphiprion_percula
ENSMUSG00000031099Smarca19680.060ENSATEG00000012894smarca59780.495Anabas_testudineus
ENSMUSG00000031099Smarca19391.084ENSAPLG00000013149SMARCA110091.084Anas_platyrhynchos
ENSMUSG00000031099Smarca19788.933ENSACAG00000011376SMARCA19590.258Anolis_carolinensis
ENSMUSG00000031099Smarca19890.988ENSANAG00000023098SMARCA110090.781Aotus_nancymaae
ENSMUSG00000031099Smarca19680.078ENSACLG00000025356smarca59581.946Astatotilapia_calliptera
ENSMUSG00000031099Smarca19779.651ENSAMXG00000005709smarca59482.653Astyanax_mexicanus
ENSMUSG00000031099Smarca18788.344ENSAMXG00000011227smarca19989.576Astyanax_mexicanus
ENSMUSG00000031099Smarca110094.041ENSBTAG00000002292SMARCA110093.655Bos_taurus
ENSMUSG00000031099Smarca19163.023WBGene00002169isw-19663.023Caenorhabditis_elegans
ENSMUSG00000031099Smarca19895.973ENSCJAG00000002868SMARCA110095.673Callithrix_jacchus
ENSMUSG00000031099Smarca19693.716ENSCAFG00000018673SMARCA19987.779Canis_familiaris
ENSMUSG00000031099Smarca110095.579ENSCAFG00020001751SMARCA110095.767Canis_lupus_dingo
ENSMUSG00000031099Smarca110094.841ENSCHIG00000009837SMARCA110094.934Capra_hircus
ENSMUSG00000031099Smarca19596.566ENSTSYG00000004240SMARCA19996.566Carlito_syrichta
ENSMUSG00000031099Smarca19795.618ENSCPOG00000013601SMARCA110093.985Cavia_porcellus
ENSMUSG00000031099Smarca19892.905ENSCCAG00000030817SMARCA110092.662Cebus_capucinus
ENSMUSG00000031099Smarca110095.893ENSCATG00000015921SMARCA110095.893Cercocebus_atys
ENSMUSG00000031099Smarca19894.919ENSCLAG00000002171SMARCA110094.732Chinchilla_lanigera
ENSMUSG00000031099Smarca110095.861ENSCSAG00000008460SMARCA110095.861Chlorocebus_sabaeus
ENSMUSG00000031099Smarca19789.255ENSCPBG00000001146SMARCA19591.054Chrysemys_picta_bellii
ENSMUSG00000031099Smarca19371.615ENSCING00000004110swi/snf9871.615Ciona_intestinalis
ENSMUSG00000031099Smarca19272.008ENSCSAVG00000004620-10073.497Ciona_savignyi
ENSMUSG00000031099Smarca110095.767ENSCANG00000007183SMARCA110095.767Colobus_angolensis_palliatus
ENSMUSG00000031099Smarca110096.523ENSCGRG00001010776Smarca110096.523Cricetulus_griseus_chok1gshd
ENSMUSG00000031099Smarca19597.172ENSCGRG00000015301Smarca19997.172Cricetulus_griseus_crigri
ENSMUSG00000031099Smarca19282.917ENSCSEG00000000328smarca59581.508Cynoglossus_semilaevis
ENSMUSG00000031099Smarca19381.864ENSCVAG00000008668smarca59982.921Cyprinodon_variegatus
ENSMUSG00000031099Smarca19484.479ENSDARG00000012776smarca19884.479Danio_rerio
ENSMUSG00000031099Smarca19481.288ENSDARG00000052348smarca59581.288Danio_rerio
ENSMUSG00000031099Smarca19993.660ENSDNOG00000004315SMARCA110093.660Dasypus_novemcinctus
ENSMUSG00000031099Smarca110095.029ENSDORG00000009270Smarca110095.029Dipodomys_ordii
ENSMUSG00000031099Smarca19471.702FBgn0011604Iswi9871.373Drosophila_melanogaster
ENSMUSG00000031099Smarca17893.750ENSETEG00000017426SMARCA18693.750Echinops_telfairi
ENSMUSG00000031099Smarca19379.776ENSEBUG00000001239smarca59679.776Eptatretus_burgeri
ENSMUSG00000031099Smarca19295.063ENSEASG00005008218SMARCA110091.960Equus_asinus_asinus
ENSMUSG00000031099Smarca110095.122ENSECAG00000012106SMARCA110095.216Equus_caballus
ENSMUSG00000031099Smarca17797.682ENSEEUG00000014927SMARCA18397.682Erinaceus_europaeus
ENSMUSG00000031099Smarca19684.917ENSELUG00000010515smarca19886.041Esox_lucius
ENSMUSG00000031099Smarca110095.951ENSFCAG00000018496SMARCA110095.951Felis_catus
ENSMUSG00000031099Smarca18990.483ENSFALG00000000209SMARCA19891.886Ficedula_albicollis
ENSMUSG00000031099Smarca19595.115ENSFDAG00000009818SMARCA19895.115Fukomys_damarensis
ENSMUSG00000031099Smarca19382.270ENSFHEG00000007687smarca59184.912Fundulus_heteroclitus
ENSMUSG00000031099Smarca19489.357ENSGALG00000008431SMARCA19790.835Gallus_gallus
ENSMUSG00000031099Smarca19382.067ENSGAFG00000017731smarca59581.508Gambusia_affinis
ENSMUSG00000031099Smarca19292.078ENSGAGG00000023575SMARCA110092.078Gopherus_agassizii
ENSMUSG00000031099Smarca19390.028ENSGGOG00000012841-9896.000Gorilla_gorilla
ENSMUSG00000031099Smarca110094.167ENSHGLG00000003080SMARCA110094.356Heterocephalus_glaber_female
ENSMUSG00000031099Smarca19495.504ENSHGLG00100001102SMARCA110095.504Heterocephalus_glaber_male
ENSMUSG00000031099Smarca19282.299ENSHCOG00000005458smarca59780.594Hippocampus_comes
ENSMUSG00000031099Smarca19684.412ENSIPUG00000016905Smarca19985.873Ictalurus_punctatus
ENSMUSG00000031099Smarca19878.902ENSIPUG00000005229SMARCA59781.534Ictalurus_punctatus
ENSMUSG00000031099Smarca110095.390ENSSTOG00000014524SMARCA110095.390Ictidomys_tridecemlineatus
ENSMUSG00000031099Smarca110096.045ENSJJAG00000002593Smarca110096.045Jaculus_jaculus
ENSMUSG00000031099Smarca19282.503ENSKMAG00000003777smarca59581.809Kryptolebias_marmoratus
ENSMUSG00000031099Smarca18982.479ENSLBEG00000013295SMARCA110084.197Labrus_bergylta
ENSMUSG00000031099Smarca19481.407ENSLBEG00000018112smarca59581.407Labrus_bergylta
ENSMUSG00000031099Smarca19687.882ENSLACG00000016697SMARCA19988.404Latimeria_chalumnae
ENSMUSG00000031099Smarca19487.625ENSLOCG00000014591smarca19787.625Lepisosteus_oculatus
ENSMUSG00000031099Smarca19595.825ENSLAFG00000000896SMARCA110095.825Loxodonta_africana
ENSMUSG00000031099Smarca110095.893ENSMFAG00000002117SMARCA110095.893Macaca_fascicularis
ENSMUSG00000031099Smarca110095.893ENSMMUG00000008818SMARCA110095.893Macaca_mulatta
ENSMUSG00000031099Smarca110095.893ENSMNEG00000041768SMARCA110095.893Macaca_nemestrina
ENSMUSG00000031099Smarca110095.767ENSMLEG00000043198SMARCA110095.767Mandrillus_leucophaeus
ENSMUSG00000031099Smarca19382.270ENSMAMG00000014294smarca59581.709Mastacembelus_armatus
ENSMUSG00000031099Smarca19680.078ENSMZEG00005009369smarca59581.946Maylandia_zebra
ENSMUSG00000031099Smarca19589.118ENSMGAG00000007042SMARCA110089.118Meleagris_gallopavo
ENSMUSG00000031099Smarca110097.708ENSMAUG00000008133Smarca110097.708Mesocricetus_auratus
ENSMUSG00000031099Smarca19895.681ENSMICG00000015768SMARCA110095.198Microcebus_murinus
ENSMUSG00000031099Smarca110097.272ENSMOCG00000009464Smarca110097.272Microtus_ochrogaster
ENSMUSG00000031099Smarca19479.698ENSMMOG00000005547smarca59979.698Mola_mola
ENSMUSG00000031099Smarca19888.428ENSMODG00000013187-9988.428Monodelphis_domestica
ENSMUSG00000031099Smarca19281.892ENSMALG00000002081smarca59781.372Monopterus_albus
ENSMUSG00000031099Smarca110099.623MGP_CAROLIEiJ_G0033034Smarca110099.623Mus_caroli
ENSMUSG00000031099Smarca110099.349MGP_PahariEiJ_G0031579Smarca110099.349Mus_pahari
ENSMUSG00000031099Smarca110099.870MGP_SPRETEiJ_G0034192Smarca110099.870Mus_spretus
ENSMUSG00000031099Smarca110095.319ENSMPUG00000017423SMARCA19594.605Mustela_putorius_furo
ENSMUSG00000031099Smarca19893.742ENSMLUG00000029614SMARCA110092.658Myotis_lucifugus
ENSMUSG00000031099Smarca110097.039ENSNGAG00000006492Smarca110097.039Nannospalax_galili
ENSMUSG00000031099Smarca19382.472ENSNBRG00000004463smarca59981.910Neolamprologus_brichardi
ENSMUSG00000031099Smarca19894.313ENSNLEG00000015179SMARCA19996.259Nomascus_leucogenys
ENSMUSG00000031099Smarca19283.451ENSMEUG00000008819SMARCA19981.007Notamacropus_eugenii
ENSMUSG00000031099Smarca19893.834ENSODEG00000012163SMARCA110093.478Octodon_degus
ENSMUSG00000031099Smarca19680.176ENSONIG00000009993smarca59582.046Oreochromis_niloticus
ENSMUSG00000031099Smarca19292.387ENSOANG00000002862SMARCA110092.387Ornithorhynchus_anatinus
ENSMUSG00000031099Smarca110093.691ENSOCUG00000001047SMARCA110093.691Oryctolagus_cuniculus
ENSMUSG00000031099Smarca19282.197ENSORLG00000021998smarca59680.495Oryzias_latipes
ENSMUSG00000031099Smarca19282.299ENSORLG00020017679smarca59780.594Oryzias_latipes_hni
ENSMUSG00000031099Smarca19282.197ENSORLG00015017210smarca59780.396Oryzias_latipes_hsok
ENSMUSG00000031099Smarca19282.197ENSOMEG00000000086smarca59780.396Oryzias_melastigma
ENSMUSG00000031099Smarca110094.798ENSOGAG00000004399SMARCA110094.240Otolemur_garnettii
ENSMUSG00000031099Smarca19595.383ENSOARG00000014638SMARCA110096.853Ovis_aries
ENSMUSG00000031099Smarca110095.861ENSPPAG00000034647SMARCA110095.861Pan_paniscus
ENSMUSG00000031099Smarca110095.951ENSPPRG00000008929SMARCA110095.951Panthera_pardus
ENSMUSG00000031099Smarca19594.618ENSPTIG00000000915SMARCA19894.618Panthera_tigris_altaica
ENSMUSG00000031099Smarca110095.893ENSPTRG00000049876SMARCA110095.893Pan_troglodytes
ENSMUSG00000031099Smarca110095.861ENSPANG00000003871SMARCA110095.861Papio_anubis
ENSMUSG00000031099Smarca19187.198ENSPKIG00000013411smarca19687.447Paramormyrops_kingsleyae
ENSMUSG00000031099Smarca19589.784ENSPSIG00000010101SMARCA110091.770Pelodiscus_sinensis
ENSMUSG00000031099Smarca110098.472ENSPEMG00000017503Smarca110098.472Peromyscus_maniculatus_bairdii
ENSMUSG00000031099Smarca19789.086ENSPCIG00000015460SMARCA19890.755Phascolarctos_cinereus
ENSMUSG00000031099Smarca19282.299ENSPFOG00000007649smarca59581.508Poecilia_formosa
ENSMUSG00000031099Smarca19282.299ENSPLAG00000003363smarca59581.508Poecilia_latipinna
ENSMUSG00000031099Smarca19282.197ENSPMEG00000019849smarca59581.407Poecilia_mexicana
ENSMUSG00000031099Smarca19282.197ENSPREG00000023250smarca59581.407Poecilia_reticulata
ENSMUSG00000031099Smarca19893.384ENSPPYG00000020703SMARCA110093.133Pongo_abelii
ENSMUSG00000031099Smarca18990.247ENSPCOG00000020722SMARCA19491.605Propithecus_coquereli
ENSMUSG00000031099Smarca19294.133ENSPVAG00000003805SMARCA19494.208Pteropus_vampyrus
ENSMUSG00000031099Smarca17583.288ENSPNYG00000012299smarca59281.166Pundamilia_nyererei
ENSMUSG00000031099Smarca110098.211ENSRNOG00000003762Smarca110098.211Rattus_norvegicus
ENSMUSG00000031099Smarca110095.767ENSRROG00000034167SMARCA110095.767Rhinopithecus_roxellana
ENSMUSG00000031099Smarca19694.220ENSSBOG00000020641SMARCA110097.157Saimiri_boliviensis_boliviensis
ENSMUSG00000031099Smarca19285.509ENSSHAG00000013518SMARCA19985.509Sarcophilus_harrisii
ENSMUSG00000031099Smarca19685.280ENSSFOG00015009043smarca19886.355Scleropages_formosus
ENSMUSG00000031099Smarca19481.244ENSSFOG00015016794smarca510082.577Scleropages_formosus
ENSMUSG00000031099Smarca19381.351ENSSMAG00000004801smarca59581.351Scophthalmus_maximus
ENSMUSG00000031099Smarca19381.966ENSSDUG00000020690smarca59681.407Seriola_dumerili
ENSMUSG00000031099Smarca19381.966ENSSLDG00000025190smarca59681.407Seriola_lalandi_dorsalis
ENSMUSG00000031099Smarca18395.880ENSSARG00000000842SMARCA18797.518Sorex_araneus
ENSMUSG00000031099Smarca19589.899ENSSPUG00000000590SMARCA19590.234Sphenodon_punctatus
ENSMUSG00000031099Smarca19381.864ENSSPAG00000002894smarca59783.370Stegastes_partitus
ENSMUSG00000031099Smarca19994.828ENSSSCG00000012649SMARCA110094.828Sus_scrofa
ENSMUSG00000031099Smarca19390.679ENSTGUG00000003899-10090.679Taeniopygia_guttata
ENSMUSG00000031099Smarca19382.371ENSTRUG00000014094smarca59581.809Takifugu_rubripes
ENSMUSG00000031099Smarca19281.957ENSTNIG00000017717smarca59481.106Tetraodon_nigroviridis
ENSMUSG00000031099Smarca18694.841ENSTBEG00000014973SMARCA19194.841Tupaia_belangeri
ENSMUSG00000031099Smarca19492.563ENSTTRG00000006168SMARCA110092.563Tursiops_truncatus
ENSMUSG00000031099Smarca110095.014ENSUAMG00000020201SMARCA110095.202Ursus_americanus
ENSMUSG00000031099Smarca19395.251ENSUMAG00000004073SMARCA19996.897Ursus_maritimus
ENSMUSG00000031099Smarca17498.413ENSVPAG00000010492-8098.413Vicugna_pacos
ENSMUSG00000031099Smarca19596.716ENSVVUG00000008878SMARCA110096.885Vulpes_vulpes
ENSMUSG00000031099Smarca19487.413ENSXETG00000001526smarca19987.413Xenopus_tropicalis
ENSMUSG00000031099Smarca19381.966ENSXCOG00000011170smarca59881.407Xiphophorus_couchianus
ENSMUSG00000031099Smarca19381.966ENSXMAG00000009678smarca59883.442Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000166nucleotide binding-IEAFunction
GO:0000790nuclear chromatin22516202.IDAComponent
GO:0003676nucleic acid binding-IEAFunction
GO:0003677DNA binding-IEAFunction
GO:0004386helicase activity-IEAFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0006325chromatin organization-IEAProcess
GO:0006338chromatin remodeling-ISOProcess
GO:0006355regulation of transcription, DNA-templated11980720.TASProcess
GO:0007420brain development22516202.IMPProcess
GO:0007420brain development-ISOProcess
GO:0008094DNA-dependent ATPase activity-ISOFunction
GO:0008134transcription factor binding-ISOFunction
GO:0016589NURF complex-ISOComponent
GO:0016787hydrolase activity-IEAFunction
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides-IEAFunction
GO:0016887ATPase activity-IEAFunction
GO:0030182neuron differentiation14609955.IMPProcess
GO:0031491nucleosome binding-IEAFunction
GO:0036310annealing helicase activity-ISOFunction
GO:0043044ATP-dependent chromatin remodeling-ISOProcess
GO:0043231intracellular membrane-bounded organelle-ISOComponent
GO:0045893positive regulation of transcription, DNA-templated-ISOProcess
GO:0045944positive regulation of transcription by RNA polymerase II-ISOProcess
GO:0070615nucleosome-dependent ATPase activity-ISOFunction
GO:0090537CERF complex-ISOComponent
GO:2000177regulation of neural precursor cell proliferation22516202.IGIProcess
GO:2000177regulation of neural precursor cell proliferation22516202.IMPProcess

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