EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000031229 (Gene tree)
Gene ID: 22589
Gene Symbol: Atrx
Alias: 4833408C14Rik|DXHXS6677E|HP1-BP38|Hp1bp2|Rad54|XH2|Xnp|alpha thalassemia/mental retardation syndrome X-linked
Full Name: ATRX%2C chromatin remodeler
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 131789
Position: chrX: 105797615-105929403
Accession: 103067
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000137453	-	644	-	ENSMUSP00000120246	89 (aa)	-	A6PWK9
ENSMUST00000113573	-	10275	XM_006527948	ENSMUSP00000109203	2476 (aa)	XP_006528011	Q61687
ENSMUST00000126345	-	520	-	-	- (aa)	-	-
ENSMUST00000134507	-	1716	-	ENSMUSP00000123085	347 (aa)	-	Q3UY26
ENSMUST00000198448	-	1835	-	ENSMUSP00000143090	520 (aa)	-	A0A0G2JFA5
ENSMUST00000134381	-	1155	-	ENSMUSP00000122875	238 (aa)	-	A6PWK8
ENSMUST00000198441	-	642	-	ENSMUSP00000143565	174 (aa)	-	A0A0G2JGH3
ENSMUST00000200471	-	3124	-	ENSMUSP00000143280	334 (aa)	-	A0A0G2JFR8
ENSMUST00000123174	-	1838	-	-	- (aa)	-	-
ENSMUST00000128968	-	3233	-	ENSMUSP00000121416	995 (aa)	-	F6RDB7
ENSMUST00000138765	-	468	-	-	- (aa)	-	-
ENSMUST00000101305	-	2903	-	ENSMUSP00000098863	181 (aa)	-	Q3TA30
ENSMUST00000197302	-	490	-	ENSMUSP00000143163	135 (aa)	-	A0A0G2JFG6
ENSMUST00000130980	-	720	-	ENSMUSP00000117528	61 (aa)	-	A6PWL2
ENSMUST00000154866	-	916	-	ENSMUSP00000121291	208 (aa)	-	A6PWK7
ENSMUST00000133543	-	545	-	-	- (aa)	-	-
ENSMUST00000142235	-	771	-	-	- (aa)	-	-
ENSMUST00000127221	-	662	-	ENSMUSP00000143664	12 (aa)	-	A0A0G2JGR1
ENSMUST00000198567	-	660	-	ENSMUSP00000143007	78 (aa)	-	A0A0G2JF35
ENSMUST00000196998	-	5431	-	-	- (aa)	-	-
ENSMUST00000199233	-	754	-	ENSMUSP00000143015	158 (aa)	-	A0A0G2JF42
ENSMUST00000198209	-	1579	-	ENSMUSP00000142726	526 (aa)	-	A0A0G2JED2
ENSMUST00000146193	-	691	-	-	- (aa)	-	-
ENSMUST00000141609	-	735	-	-	- (aa)	-	-
ENSMUST00000150914	-	1920	-	ENSMUSP00000122034	385 (aa)	-	Q8C2S3
ENSMUST00000143361	-	743	-	-	- (aa)	-	-
ENSMUST00000155445	-	942	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000031229's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000031229's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000031229	Atrx	100	93.333	ENSG00000085224	ATRX	99	93.909	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000212	meiotic spindle organization	15242786.	IMP	Process
GO:0000228	nuclear chromosome	11555636.	IDA	Component
GO:0000780	condensed nuclear chromosome, centromeric region	15242786.	IDA	Component
GO:0000781	chromosome, telomeric region	-	IEA	Component
GO:0000784	nuclear chromosome, telomeric region	20110566.26159997.	IDA	Component
GO:0000784	nuclear chromosome, telomeric region	23444137.	IDA	Component
GO:0000792	heterochromatin	14519686.15252119.17296936.	IDA	Component
GO:0003677	DNA binding	-	IEA	Function
GO:0003682	chromatin binding	15522233.	IDA	Function
GO:0003682	chromatin binding	-	ISO	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005515	protein binding	8978696.15252119.17296936.20159591.21427128.24651726.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	17296936.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005721	pericentric heterochromatin	20110566.26159997.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006325	chromatin organization	-	IEA	Process
GO:0006334	nucleosome assembly	-	ISO	Process
GO:0006336	DNA replication-independent nucleosome assembly	-	ISO	Process
GO:0006338	chromatin remodeling	-	ISO	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0007283	spermatogenesis	21427128.	IMP	Process
GO:0010571	positive regulation of nuclear cell cycle DNA replication	24651726.	IMP	Process
GO:0015616	DNA translocase activity	-	ISO	Function
GO:0016604	nuclear body	-	ISO	Component
GO:0016605	PML body	23444137.	IDA	Component
GO:0016787	hydrolase activity	-	IEA	Function
GO:0030330	DNA damage response, signal transduction by p53 class mediator	24651726.	IMP	Process
GO:0030900	forebrain development	15668733.	IMP	Process
GO:0031297	replication fork processing	24651726.	IMP	Process
GO:0031618	nuclear pericentric heterochromatin	15242786.	IDA	Component
GO:0031933	telomeric heterochromatin	20110566.	IDA	Component
GO:0032206	positive regulation of telomere maintenance	20110566.	IMP	Process
GO:0035064	methylated histone binding	-	ISO	Function
GO:0035128	post-embryonic forelimb morphogenesis	24386478.	IMP	Process
GO:0035264	multicellular organism growth	24386478.	IMP	Process
GO:0042393	histone binding	20211137.	IDA	Function
GO:0042393	histone binding	20110566.	IPI	Function
GO:0042393	histone binding	-	ISO	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	21427128.	IGI	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0060009	Sertoli cell development	21427128.	IMP	Process
GO:0070087	chromo shadow domain binding	-	ISO	Function
GO:0070192	chromosome organization involved in meiotic cell cycle	15242786.	IMP	Process
GO:0070198	protein localization to chromosome, telomeric region	20110566.	IMP	Process
GO:0072520	seminiferous tubule development	21427128.	IMP	Process
GO:0072711	cellular response to hydroxyurea	24651726.	IMP	Process
GO:1900112	regulation of histone H3-K9 trimethylation	-	ISO	Process
GO:1901581	negative regulation of telomeric RNA transcription from RNA pol II promoter	20211137.	IMP	Process
GO:1901582	positive regulation of telomeric RNA transcription from RNA pol II promoter	-	ISO	Process
GO:1904908	negative regulation of maintenance of mitotic sister chromatid cohesion, telomeric	-	ISO	Process
GO:1990707	nuclear subtelomeric heterochromatin	-	ISO	Component