EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000031256 (Gene tree)
Gene ID: 108062
Gene Symbol: Cstf2
Alias: C630034J23Rik|Cstf64
Full Name: cleavage stimulation factor%2C 3' pre-RNA subunit 2
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 27633 bases
Position: chrX:134059187-134086819
Accession: 1343054
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000108911	RRM_1	PF00076.22	3.1e-25	1	1
ENSMUSP00000108912	RRM_1	PF00076.22	3.5e-25	1	1
ENSMUSP00000033609	RRM_1	PF00076.22	3.7e-25	1	1
ENSMUSP00000114837	RRM_1	PF00076.22	2.8e-11	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000033609	-	4502	XM_006528478	ENSMUSP00000033609	580 (aa)	XP_006528541	Q8BIQ5
ENSMUST00000136510	-	574	-	ENSMUSP00000117806	191 (aa)	-	A2AEK3
ENSMUST00000113286	-	2717	-	ENSMUSP00000108911	510 (aa)	-	Q8BIQ5
ENSMUST00000113287	-	3661	XM_006528479	ENSMUSP00000108912	554 (aa)	-	A2AEK1
ENSMUST00000148080	-	743	-	-	- (aa)	-	-
ENSMUST00000156778	-	775	-	ENSMUSP00000117592	259 (aa)	-	F6ZKC7
ENSMUST00000149658	-	7514	-	-	- (aa)	-	-
ENSMUST00000144483	-	552	-	ENSMUSP00000114837	184 (aa)	-	A2AEJ8

Gene Model

Click here to download ENSMUSG00000031256's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000031256's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000031256	Cstf2	86	87.342	ENSMUSG00000053536	Cstf2t	99	63.318

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000031256	Cstf2	100	93.276	ENSG00000101811	CSTF2	96	98.140	Homo_sapiens
ENSMUSG00000031256	Cstf2	84	91.613	ENSAPOG00000005630	cstf2	96	60.650	Acanthochromis_polyacanthus
ENSMUSG00000031256	Cstf2	100	88.633	ENSAMEG00000002082	CSTF2	100	88.633	Ailuropoda_melanoleuca
ENSMUSG00000031256	Cstf2	84	92.258	ENSACIG00000012852	cstf2	96	58.228	Amphilophus_citrinellus
ENSMUSG00000031256	Cstf2	85	91.026	ENSAOCG00000020905	cstf2	96	59.155	Amphiprion_ocellaris
ENSMUSG00000031256	Cstf2	84	91.613	ENSAPEG00000006526	cstf2	96	59.155	Amphiprion_percula
ENSMUSG00000031256	Cstf2	84	92.258	ENSATEG00000018186	cstf2	96	60.252	Anabas_testudineus
ENSMUSG00000031256	Cstf2	87	91.875	ENSAPLG00000007255	CSTF2	98	73.411	Anas_platyrhynchos
ENSMUSG00000031256	Cstf2	100	92.069	ENSANAG00000022342	CSTF2	100	92.069	Aotus_nancymaae
ENSMUSG00000031256	Cstf2	85	92.308	ENSACLG00000000779	cstf2	93	60.682	Astatotilapia_calliptera
ENSMUSG00000031256	Cstf2	84	90.323	ENSAMXG00000021477	cstf2	96	98.413	Astyanax_mexicanus
ENSMUSG00000031256	Cstf2	100	90.690	ENSBTAG00000003547	CSTF2	100	90.690	Bos_taurus
ENSMUSG00000031256	Cstf2	100	92.414	ENSCJAG00000004422	CSTF2	100	92.414	Callithrix_jacchus
ENSMUSG00000031256	Cstf2	100	92.069	ENSCAFG00000017551	CSTF2	100	92.069	Canis_familiaris
ENSMUSG00000031256	Cstf2	99	90.927	ENSCAFG00020007619	CSTF2	99	90.927	Canis_lupus_dingo
ENSMUSG00000031256	Cstf2	100	90.345	ENSCHIG00000016994	CSTF2	100	90.345	Capra_hircus
ENSMUSG00000031256	Cstf2	100	93.276	ENSTSYG00000006529	CSTF2	100	93.276	Carlito_syrichta
ENSMUSG00000031256	Cstf2	100	92.241	ENSCPOG00000015255	CSTF2	100	92.241	Cavia_porcellus
ENSMUSG00000031256	Cstf2	100	92.414	ENSCCAG00000032975	CSTF2	100	92.414	Cebus_capucinus
ENSMUSG00000031256	Cstf2	100	92.759	ENSCATG00000022835	CSTF2	100	92.759	Cercocebus_atys
ENSMUSG00000031256	Cstf2	100	91.552	ENSCLAG00000001904	CSTF2	100	91.552	Chinchilla_lanigera
ENSMUSG00000031256	Cstf2	100	89.833	ENSCSAG00000010360	CSTF2	100	89.833	Chlorocebus_sabaeus
ENSMUSG00000031256	Cstf2	76	96.403	ENSCHOG00000012803	CSTF2	75	99.371	Choloepus_hoffmanni
ENSMUSG00000031256	Cstf2	87	92.500	ENSCPBG00000014293	CSTF2	100	74.121	Chrysemys_picta_bellii
ENSMUSG00000031256	Cstf2	100	92.931	ENSCANG00000030612	CSTF2	100	92.931	Colobus_angolensis_palliatus
ENSMUSG00000031256	Cstf2	100	97.931	ENSCGRG00001023023	Cstf2	100	97.931	Cricetulus_griseus_chok1gshd
ENSMUSG00000031256	Cstf2	100	94.483	ENSCGRG00000003897	Cstf2	100	94.483	Cricetulus_griseus_crigri
ENSMUSG00000031256	Cstf2	84	92.903	ENSCVAG00000005731	cstf2	96	60.137	Cyprinodon_variegatus
ENSMUSG00000031256	Cstf2	86	89.241	ENSDARG00000090788	cstf2	91	98.305	Danio_rerio
ENSMUSG00000031256	Cstf2	100	90.378	ENSDORG00000007195	Cstf2	100	90.378	Dipodomys_ordii
ENSMUSG00000031256	Cstf2	87	96.875	ENSETEG00000004931	CSTF2	68	94.595	Echinops_telfairi
ENSMUSG00000031256	Cstf2	100	89.000	ENSEASG00005001216	CSTF2	100	89.000	Equus_asinus_asinus
ENSMUSG00000031256	Cstf2	100	92.069	ENSECAG00000009325	CSTF2	100	92.069	Equus_caballus
ENSMUSG00000031256	Cstf2	100	91.724	ENSFCAG00000007000	CSTF2	100	91.724	Felis_catus
ENSMUSG00000031256	Cstf2	84	94.194	ENSFALG00000003859	CSTF2	100	73.721	Ficedula_albicollis
ENSMUSG00000031256	Cstf2	100	92.241	ENSFDAG00000002416	CSTF2	100	92.241	Fukomys_damarensis
ENSMUSG00000031256	Cstf2	85	91.026	ENSFHEG00000017065	cstf2	93	59.474	Fundulus_heteroclitus
ENSMUSG00000031256	Cstf2	86	85.443	ENSGMOG00000005145	cstf2	99	56.732	Gadus_morhua
ENSMUSG00000031256	Cstf2	87	91.875	ENSGALG00000006760	CSTF2	100	78.438	Gallus_gallus
ENSMUSG00000031256	Cstf2	85	91.026	ENSGAFG00000020027	cstf2	96	60.461	Gambusia_affinis
ENSMUSG00000031256	Cstf2	83	88.462	ENSGACG00000017326	cstf2	94	83.673	Gasterosteus_aculeatus
ENSMUSG00000031256	Cstf2	87	92.500	ENSGAGG00000006037	CSTF2	100	76.461	Gopherus_agassizii
ENSMUSG00000031256	Cstf2	100	93.276	ENSGGOG00000022267	CSTF2	100	93.276	Gorilla_gorilla
ENSMUSG00000031256	Cstf2	85	92.308	ENSHBUG00000016183	cstf2	93	60.250	Haplochromis_burtoni
ENSMUSG00000031256	Cstf2	100	92.414	ENSHGLG00000000659	-	100	92.414	Heterocephalus_glaber_female
ENSMUSG00000031256	Cstf2	100	78.448	ENSHGLG00000013455	-	100	78.448	Heterocephalus_glaber_female
ENSMUSG00000031256	Cstf2	100	78.621	ENSHGLG00100015391	-	100	78.621	Heterocephalus_glaber_male
ENSMUSG00000031256	Cstf2	100	92.414	ENSHGLG00100001130	-	100	92.414	Heterocephalus_glaber_male
ENSMUSG00000031256	Cstf2	83	92.157	ENSHCOG00000005157	cstf2	97	62.050	Hippocampus_comes
ENSMUSG00000031256	Cstf2	86	89.873	ENSIPUG00000017839	cstf2	99	59.354	Ictalurus_punctatus
ENSMUSG00000031256	Cstf2	100	92.759	ENSSTOG00000023445	CSTF2	100	92.759	Ictidomys_tridecemlineatus
ENSMUSG00000031256	Cstf2	100	93.793	ENSJJAG00000020507	Cstf2	100	93.793	Jaculus_jaculus
ENSMUSG00000031256	Cstf2	85	91.026	ENSKMAG00000001068	cstf2	96	58.938	Kryptolebias_marmoratus
ENSMUSG00000031256	Cstf2	56	94.915	ENSLBEG00000028720	cstf2	85	94.915	Labrus_bergylta
ENSMUSG00000031256	Cstf2	87	90.625	ENSLACG00000015927	CSTF2	99	63.011	Latimeria_chalumnae
ENSMUSG00000031256	Cstf2	84	91.613	ENSLOCG00000015300	cstf2	93	63.435	Lepisosteus_oculatus
ENSMUSG00000031256	Cstf2	100	88.448	ENSLAFG00000000474	CSTF2	100	88.448	Loxodonta_africana
ENSMUSG00000031256	Cstf2	100	92.931	ENSMFAG00000043888	CSTF2	100	92.931	Macaca_fascicularis
ENSMUSG00000031256	Cstf2	100	90.161	ENSMMUG00000013008	CSTF2	99	92.389	Macaca_mulatta
ENSMUSG00000031256	Cstf2	100	92.931	ENSMNEG00000041824	CSTF2	100	92.931	Macaca_nemestrina
ENSMUSG00000031256	Cstf2	100	92.931	ENSMLEG00000036870	CSTF2	100	92.931	Mandrillus_leucophaeus
ENSMUSG00000031256	Cstf2	85	91.026	ENSMAMG00000020364	cstf2	96	58.608	Mastacembelus_armatus
ENSMUSG00000031256	Cstf2	84	92.903	ENSMZEG00005007200	cstf2	96	60.682	Maylandia_zebra
ENSMUSG00000031256	Cstf2	86	93.038	ENSMGAG00000004139	CSTF2	99	67.384	Meleagris_gallopavo
ENSMUSG00000031256	Cstf2	100	97.931	ENSMAUG00000000965	Cstf2	100	97.931	Mesocricetus_auratus
ENSMUSG00000031256	Cstf2	100	92.759	ENSMICG00000014121	CSTF2	100	92.759	Microcebus_murinus
ENSMUSG00000031256	Cstf2	100	96.207	ENSMOCG00000008081	Cstf2	100	96.207	Microtus_ochrogaster
ENSMUSG00000031256	Cstf2	85	91.026	ENSMMOG00000000538	cstf2	96	54.301	Mola_mola
ENSMUSG00000031256	Cstf2	87	93.750	ENSMODG00000011785	CSTF2	100	77.340	Monodelphis_domestica
ENSMUSG00000031256	Cstf2	100	100.000	MGP_CAROLIEiJ_G0033383	Cstf2	100	100.000	Mus_caroli
ENSMUSG00000031256	Cstf2	100	99.655	MGP_PahariEiJ_G0031923	Cstf2	100	99.655	Mus_pahari
ENSMUSG00000031256	Cstf2	100	100.000	MGP_SPRETEiJ_G0034548	Cstf2	100	100.000	Mus_spretus
ENSMUSG00000031256	Cstf2	100	84.360	ENSMPUG00000002339	CSTF2	100	84.360	Mustela_putorius_furo
ENSMUSG00000031256	Cstf2	87	96.875	ENSMLUG00000004598	CSTF2	98	83.544	Myotis_lucifugus
ENSMUSG00000031256	Cstf2	100	95.862	ENSNGAG00000021985	Cstf2	100	95.862	Nannospalax_galili
ENSMUSG00000031256	Cstf2	82	94.040	ENSNBRG00000021694	cstf2	100	56.147	Neolamprologus_brichardi
ENSMUSG00000031256	Cstf2	100	92.931	ENSNLEG00000007510	CSTF2	100	92.931	Nomascus_leucogenys
ENSMUSG00000031256	Cstf2	81	95.302	ENSMEUG00000014025	-	100	78.072	Notamacropus_eugenii
ENSMUSG00000031256	Cstf2	87	93.750	ENSMEUG00000011186	-	100	81.552	Notamacropus_eugenii
ENSMUSG00000031256	Cstf2	87	91.250	ENSMEUG00000007875	-	100	76.552	Notamacropus_eugenii
ENSMUSG00000031256	Cstf2	84	99.351	ENSOPRG00000003106	CSTF2	87	80.995	Ochotona_princeps
ENSMUSG00000031256	Cstf2	100	91.207	ENSODEG00000002059	CSTF2	100	91.207	Octodon_degus
ENSMUSG00000031256	Cstf2	85	91.667	ENSONIG00000002631	cstf2	89	73.026	Oreochromis_niloticus
ENSMUSG00000031256	Cstf2	86	100.000	ENSOANG00000004208	CSTF2	87	92.857	Ornithorhynchus_anatinus
ENSMUSG00000031256	Cstf2	100	92.069	ENSOCUG00000010468	CSTF2	100	92.069	Oryctolagus_cuniculus
ENSMUSG00000031256	Cstf2	85	90.385	ENSORLG00000001380	cstf2	96	57.570	Oryzias_latipes
ENSMUSG00000031256	Cstf2	85	90.385	ENSORLG00020021917	cstf2	96	57.923	Oryzias_latipes_hni
ENSMUSG00000031256	Cstf2	85	90.385	ENSORLG00015011996	cstf2	96	57.570	Oryzias_latipes_hsok
ENSMUSG00000031256	Cstf2	84	92.258	ENSOMEG00000015507	cstf2	96	60.901	Oryzias_melastigma
ENSMUSG00000031256	Cstf2	87	96.875	ENSOGAG00000011192	CSTF2	100	82.120	Otolemur_garnettii
ENSMUSG00000031256	Cstf2	100	90.345	ENSOARG00000001022	CSTF2	100	90.345	Ovis_aries
ENSMUSG00000031256	Cstf2	100	93.276	ENSPPAG00000031804	CSTF2	100	93.276	Pan_paniscus
ENSMUSG00000031256	Cstf2	100	91.897	ENSPPRG00000022492	CSTF2	100	91.897	Panthera_pardus
ENSMUSG00000031256	Cstf2	100	91.552	ENSPTIG00000009922	CSTF2	100	91.552	Panthera_tigris_altaica
ENSMUSG00000031256	Cstf2	100	93.276	ENSPTRG00000022090	CSTF2	100	93.276	Pan_troglodytes
ENSMUSG00000031256	Cstf2	100	92.931	ENSPANG00000002303	CSTF2	100	92.931	Papio_anubis
ENSMUSG00000031256	Cstf2	84	92.258	ENSPKIG00000005033	cstf2	97	59.284	Paramormyrops_kingsleyae
ENSMUSG00000031256	Cstf2	84	92.258	ENSPMGG00000006534	cstf2	96	59.043	Periophthalmus_magnuspinnatus
ENSMUSG00000031256	Cstf2	100	97.069	ENSPEMG00000019415	Cstf2	100	97.069	Peromyscus_maniculatus_bairdii
ENSMUSG00000031256	Cstf2	87	93.750	ENSPCIG00000002989	CSTF2	100	77.124	Phascolarctos_cinereus
ENSMUSG00000031256	Cstf2	85	91.667	ENSPLAG00000011176	cstf2	96	58.507	Poecilia_latipinna
ENSMUSG00000031256	Cstf2	85	91.667	ENSPMEG00000017743	cstf2	96	57.633	Poecilia_mexicana
ENSMUSG00000031256	Cstf2	84	92.258	ENSPREG00000011481	cstf2	57	71.687	Poecilia_reticulata
ENSMUSG00000031256	Cstf2	100	90.000	ENSPPYG00000020541	CSTF2	100	90.000	Pongo_abelii
ENSMUSG00000031256	Cstf2	100	92.931	ENSPCOG00000027744	CSTF2	100	92.931	Propithecus_coquereli
ENSMUSG00000031256	Cstf2	97	77.143	ENSPVAG00000008342	CSTF2	100	76.429	Pteropus_vampyrus
ENSMUSG00000031256	Cstf2	85	92.308	ENSPNYG00000010852	cstf2	94	91.781	Pundamilia_nyererei
ENSMUSG00000031256	Cstf2	84	90.968	ENSPNAG00000018887	cstf2	97	60.449	Pygocentrus_nattereri
ENSMUSG00000031256	Cstf2	100	98.276	ENSRNOG00000048025	Cstf2	100	98.276	Rattus_norvegicus
ENSMUSG00000031256	Cstf2	100	91.207	ENSRBIG00000030745	CSTF2	100	91.207	Rhinopithecus_bieti
ENSMUSG00000031256	Cstf2	100	92.069	ENSRROG00000045042	CSTF2	100	92.069	Rhinopithecus_roxellana
ENSMUSG00000031256	Cstf2	100	92.414	ENSSBOG00000021649	CSTF2	100	92.414	Saimiri_boliviensis_boliviensis
ENSMUSG00000031256	Cstf2	95	98.214	ENSSHAG00000003681	CSTF2	92	77.226	Sarcophilus_harrisii
ENSMUSG00000031256	Cstf2	84	92.258	ENSSFOG00015006348	cstf2	97	62.862	Scleropages_formosus
ENSMUSG00000031256	Cstf2	86	91.139	ENSSMAG00000013463	cstf2	96	58.596	Scophthalmus_maximus
ENSMUSG00000031256	Cstf2	87	91.875	ENSSPUG00000005288	-	96	78.105	Sphenodon_punctatus
ENSMUSG00000031256	Cstf2	100	91.034	ENSSSCG00000012486	CSTF2	100	91.034	Sus_scrofa
ENSMUSG00000031256	Cstf2	87	91.875	ENSTGUG00000002253	CSTF2	100	78.342	Taeniopygia_guttata
ENSMUSG00000031256	Cstf2	84	90.323	ENSTNIG00000016860	cstf2	99	59.044	Tetraodon_nigroviridis
ENSMUSG00000031256	Cstf2	53	100.000	ENSTBEG00000010029	-	69	100.000	Tupaia_belangeri
ENSMUSG00000031256	Cstf2	100	91.897	ENSTTRG00000013556	CSTF2	100	91.897	Tursiops_truncatus
ENSMUSG00000031256	Cstf2	100	92.137	ENSUAMG00000026605	CSTF2	100	92.137	Ursus_americanus
ENSMUSG00000031256	Cstf2	100	84.828	ENSUMAG00000012417	CSTF2	100	93.772	Ursus_maritimus
ENSMUSG00000031256	Cstf2	87	96.875	ENSVPAG00000006466	CSTF2	72	90.962	Vicugna_pacos
ENSMUSG00000031256	Cstf2	100	92.241	ENSVVUG00000004717	CSTF2	100	92.241	Vulpes_vulpes
ENSMUSG00000031256	Cstf2	87	90.625	ENSXETG00000009642	cstf2	87	88.571	Xenopus_tropicalis
ENSMUSG00000031256	Cstf2	80	92.517	ENSXCOG00000016436	cstf2	83	96.970	Xiphophorus_couchianus
ENSMUSG00000031256	Cstf2	85	91.026	ENSXMAG00000013524	cstf2	97	57.500	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	21873635.	IBA	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	-	ISO	Component
GO:0006378	mRNA polyadenylation	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0016604	nuclear body	-	ISO	Component
GO:0031124	mRNA 3'-end processing	-	IEA	Process
GO:0071920	cleavage body	-	ISO	Component
GO:0098789	pre-mRNA cleavage required for polyadenylation	21873635.	IBA	Process