EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000156531	-	729	-	-	- (aa)	-	-
ENSMUST00000126440	-	629	-	-	- (aa)	-	-
ENSMUST00000127535	-	457	-	-	- (aa)	-	-
ENSMUST00000033662	-	2848	-	ENSMUSP00000033662	390 (aa)	-	P35486

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu00010	Glycolysis / Gluconeogenesis	KEGG
mmu00020	Citrate cycle (TCA cycle)	KEGG
mmu00620	Pyruvate metabolism	KEGG
mmu01100	Metabolic pathways	KEGG
mmu01200	Carbon metabolism	KEGG
mmu04066	HIF-1 signaling pathway	KEGG
mmu04922	Glucagon signaling pathway	KEGG
mmu05230	Central carbon metabolism in cancer	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000031299	Pdha1	91	62.712	WBGene00011510	pdha-1	89	62.712	Caenorhabditis_elegans
ENSMUSG00000031299	Pdha1	80	56.731	YER178W		74	56.731	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004738	pyruvate dehydrogenase activity	11708858.	IMP	Function
GO:0004738	pyruvate dehydrogenase activity	-	ISO	Function
GO:0004739	pyruvate dehydrogenase (acetyl-transferring) activity	-	ISO	Function
GO:0005515	protein binding	29128334.	IPI	Function
GO:0005730	nucleolus	-	ISO	Component
GO:0005739	mitochondrion	14651853.18614015.	HDA	Component
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005975	carbohydrate metabolic process	-	IEA	Process
GO:0006006	glucose metabolic process	-	IEA	Process
GO:0006086	acetyl-CoA biosynthetic process from pyruvate	-	ISO	Process
GO:0006099	tricarboxylic acid cycle	-	ISO	Process
GO:0016491	oxidoreductase activity	-	IEA	Function
GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	-	IEA	Function
GO:0034604	pyruvate dehydrogenase (NAD+) activity	18586888.	IMP	Function
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0043231	intracellular membrane-bounded organelle	-	IEA	Component
GO:0045254	pyruvate dehydrogenase complex	-	ISO	Component
GO:0055114	oxidation-reduction process	-	IEA	Process
GO:0061732	mitochondrial acetyl-CoA biosynthetic process from pyruvate	18586888.	IMP	Process