EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000031353 (Gene tree)
Gene ID: 245688
Gene Symbol: Rbbp7
Alias: -
Full Name: retinoblastoma binding protein 7%2C chromatin remodeling factor
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 18691
Position: chrX: 162760402-162779092
Accession: 1194910
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000112326	-	1430	-	ENSMUSP00000107945	386 (aa)	-	A2AFI9
ENSMUST00000143681	-	784	-	ENSMUSP00000115354	76 (aa)	-	F6U539
ENSMUST00000033720	-	2244	-	ENSMUSP00000033720	425 (aa)	-	Q60973
ENSMUST00000112327	-	1862	-	ENSMUSP00000107946	416 (aa)	-	A2AFJ1
ENSMUST00000138791	-	705	-	ENSMUSP00000114734	235 (aa)	-	F6ZLC6

Gene Model

Click here to download ENSMUSG00000031353's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000031353's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000031353	Rbbp7	97	90.541	WBGene00003036	lin-53	99	70.213	Caenorhabditis_elegans
ENSMUSG00000031353	Rbbp7	100	99.765	ENSG00000102054	RBBP7	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	12376095.	IDA	Process
GO:0003723	RNA binding	22911650.	IPI	Function
GO:0005515	protein binding	11836251.22770845.	IPI	Function
GO:0005634	nucleus	12376095.16462733.22770845.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006260	DNA replication	-	IEA	Process
GO:0006325	chromatin organization	-	IEA	Process
GO:0006338	chromatin remodeling	14645126.	TAS	Process
GO:0016581	NuRD complex	14645126.	IDA	Component
GO:0016581	NuRD complex	-	ISO	Component
GO:0030308	negative regulation of cell growth	-	ISO	Process
GO:0035098	ESC/E(Z) complex	-	ISO	Component
GO:0045892	negative regulation of transcription, DNA-templated	12376095.	IDA	Process
GO:0070370	cellular heat acclimation	-	ISO	Process
GO:0070370	cellular heat acclimation	7503932.	ISS	Process