EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000031370 (Gene tree)
Gene ID: 22184
Gene Symbol: Zrsr2
Alias: 35kDa|5031411E02Rik|A230052C13Rik|U2af1-rs2
Full Name: zinc finger (CCCH type)%2C RNA binding motif and serine/arginine rich 2
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 23219 bases
Position: chrX:163935443-163958661
Accession: 103287
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000107908	zf-CCCH	PF00642.24	1.3e-12	1	1
ENSMUSP00000107908	RRM_1	PF00076.22	0.00043	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000145962	-	584	-	-	- (aa)	-	-
ENSMUST00000090840	-	3867	-	ENSMUSP00000088350	144 (aa)	-	B1B0E9
ENSMUST00000139166	-	504	-	-	- (aa)	-	-
ENSMUST00000112289	-	2735	XM_006528795	ENSMUSP00000107908	541 (aa)	XP_006528858	B1B0E8
ENSMUST00000147928	-	460	-	ENSMUSP00000122747	113 (aa)	-	B1B0F0
ENSMUST00000124719	-	712	-	-	- (aa)	-	-
ENSMUST00000127370	-	382	-	ENSMUSP00000120257	71 (aa)	-	B1B0F1
ENSMUST00000132350	-	770	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000031370's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000031370's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000031370	Zrsr2	80	74.023	ENSMUSG00000044068	Zrsr1	83	76.776

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000031370	Zrsr2	79	76.761	ENSANAG00000036245	-	76	78.571	Aotus_nancymaae
ENSMUSG00000031370	Zrsr2	63	65.230	ENSCAFG00000025134	-	69	65.541	Canis_familiaris
ENSMUSG00000031370	Zrsr2	52	67.014	ENSGAFG00000008284	-	54	61.415	Gambusia_affinis
ENSMUSG00000031370	Zrsr2	100	94.640	MGP_CAROLIEiJ_G0033555	Zrsr2	81	98.595	Mus_caroli
ENSMUSG00000031370	Zrsr2	81	93.379	MGP_PahariEiJ_G0032094	Zrsr2	80	95.550	Mus_pahari
ENSMUSG00000031370	Zrsr2	100	95.749	MGP_SPRETEiJ_G0034725	Zrsr2	80	98.357	Mus_spretus
ENSMUSG00000031370	Zrsr2	78	87.470	ENSPEMG00000018871	-	87	90.349	Peromyscus_maniculatus_bairdii
ENSMUSG00000031370	Zrsr2	87	88.323	ENSRNOG00000033176	Zrsr2	79	91.355	Rattus_norvegicus
ENSMUSG00000031370	Zrsr2	59	61.728	ENSSLDG00000009759	-	58	64.789	Seriola_lalandi_dorsalis
ENSMUSG00000031370	Zrsr2	51	81.197	ENSSARG00000000116	-	56	80.702	Sorex_araneus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000245	spliceosomal complex assembly	-	ISO	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005681	spliceosomal complex	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	-	ISO	Component
GO:0005730	nucleolus	11555636.	IDA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0030628	pre-mRNA 3'-splice site binding	21873635.	IBA	Function
GO:0030628	pre-mRNA 3'-splice site binding	-	ISO	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0089701	U2AF	21873635.	IBA	Component