EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000031386 (Gene tree)
Gene ID: 15161
Gene Symbol: Hcfc1
Alias: HCF-1|HCF1|VP16 accessory protein
Full Name: host cell factor C1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 23566
Position: chrX: 73942792-73966357
Accession: 105942
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000156204	-	882	-	-	- (aa)	-	-
ENSMUST00000033761	-	8138	XM_017318387	ENSMUSP00000033761	2045 (aa)	XP_017173876	Q61191
ENSMUST00000114372	-	8262	XM_006527835	ENSMUSP00000110012	2090 (aa)	XP_006527898	B1AUX2
ENSMUST00000131091	-	828	-	-	- (aa)	-	-
ENSMUST00000128136	-	3480	-	ENSMUSP00000115792	612 (aa)	-	F6SJS2
ENSMUST00000128325	-	476	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000031386's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000031386's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000031386	Hcfc1	100	93.311	ENSG00000172534	HCFC1	100	93.164	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000123	histone acetyltransferase complex	-	ISO	Component
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	18836447.	IDA	Function
GO:0001835	blastocyst hatching	27869233.	IMP	Process
GO:0003682	chromatin binding	-	ISO	Function
GO:0003713	transcription coactivator activity	-	ISO	Function
GO:0003713	transcription coactivator activity	9334261.	TAS	Function
GO:0005515	protein binding	23352454.	IPI	Function
GO:0005634	nucleus	9990006.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005671	Ada2/Gcn5/Ada3 transcription activator complex	-	ISO	Component
GO:0005737	cytoplasm	9990006.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0006355	regulation of transcription, DNA-templated	-	ISO	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0010628	positive regulation of gene expression	-	ISO	Process
GO:0019046	release from viral latency	9990006.	IDA	Process
GO:0030424	axon	-	ISO	Component
GO:0030425	dendrite	-	ISO	Component
GO:0030674	protein binding, bridging	-	ISO	Function
GO:0032991	protein-containing complex	-	ISO	Component
GO:0033613	activating transcription factor binding	-	ISO	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0043025	neuronal cell body	-	ISO	Component
GO:0043254	regulation of protein complex assembly	-	ISO	Process
GO:0043981	histone H4-K5 acetylation	-	ISO	Process
GO:0043982	histone H4-K8 acetylation	-	ISO	Process
GO:0043984	histone H4-K16 acetylation	-	ISO	Process
GO:0043995	histone acetyltransferase activity (H4-K5 specific)	-	ISO	Function
GO:0043996	histone acetyltransferase activity (H4-K8 specific)	-	ISO	Function
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:0046972	histone acetyltransferase activity (H4-K16 specific)	-	ISO	Function
GO:0048188	Set1C/COMPASS complex	-	ISO	Component
GO:0050821	protein stabilization	-	ISO	Process
GO:0062023	collagen-containing extracellular matrix	22159717.28071719.	HDA	Component
GO:0070461	SAGA-type complex	-	ISO	Component
GO:0071339	MLL1 complex	-	ISO	Component
GO:1990837	sequence-specific double-stranded DNA binding	18836447.	IDA	Function