EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000031403 (Gene tree)
Gene ID
245474
Gene Symbol
Dkc1
Alias
-
Full Name
dyskeratosis congenita 1%2C dyskerin
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
13924 bases
Position
chrX:75095854-75109777
Accession
1861727
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000033776TruB_NPF01509.185e-2011
ENSMUSP00000120441TruB_NPF01509.181.1e-1911
ENSMUSP00000033776PUAPF01472.204.1e-1711
ENSMUSP00000121957DKCLDPF08068.129.6e-3211
ENSMUSP00000033776DKCLDPF08068.122.7e-3111
ENSMUSP00000120441DKCLDPF08068.122.9e-3111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000153844-657-ENSMUSP0000012125374 (aa)-F6S1S5
ENSMUST00000137286-610--- (aa)--
ENSMUST00000135389-898--- (aa)--
ENSMUST00000154422-551--- (aa)--
ENSMUST00000151327-963--- (aa)--
ENSMUST00000132000-462-ENSMUSP00000121957145 (aa)-A2AN81
ENSMUST00000140609-754-ENSMUSP00000117706184 (aa)-F6YUI5
ENSMUST00000033776-2804XM_006528023ENSMUSP00000033776509 (aa)-Q9ESX5
ENSMUST00000131867-541--- (aa)--
ENSMUST00000145222-592--- (aa)--
ENSMUST00000154936-668--- (aa)--
ENSMUST00000131155-839-ENSMUSP00000120441260 (aa)-B7ZCL7
Gene Model
Click here to download ENSMUSG00000031403's gene model file
Pathways
Pathway IDPathway NameSource
mmu03008Ribosome biogenesis in eukaryotesKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000031403's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000031403Dkc19996.512ENSG00000130826DKC19997.561Homo_sapiens
ENSMUSG00000031403Dkc18681.279ENSAPOG00000007799dkc18481.279Acanthochromis_polyacanthus
ENSMUSG00000031403Dkc110084.828ENSAMEG00000002776DKC110089.784Ailuropoda_melanoleuca
ENSMUSG00000031403Dkc19273.381ENSACIG00000022614dkc18386.683Amphilophus_citrinellus
ENSMUSG00000031403Dkc110070.333ENSAOCG00000013159dkc19377.447Amphiprion_ocellaris
ENSMUSG00000031403Dkc110070.333ENSAPEG00000002284dkc19477.447Amphiprion_percula
ENSMUSG00000031403Dkc18777.582ENSATEG00000013682dkc18977.632Anabas_testudineus
ENSMUSG00000031403Dkc19380.842ENSACAG00000015600DKC17684.424Anolis_carolinensis
ENSMUSG00000031403Dkc19690.650ENSANAG00000022732DKC19790.744Aotus_nancymaae
ENSMUSG00000031403Dkc19272.401ENSACLG00000015605dkc18185.930Astatotilapia_calliptera
ENSMUSG00000031403Dkc18780.674ENSAMXG00000017108dkc18878.541Astyanax_mexicanus
ENSMUSG00000031403Dkc110083.333ENSBTAG00000013045DKC19788.438Bos_taurus
ENSMUSG00000031403Dkc19557.692WBGene00010478K01G5.59863.326Caenorhabditis_elegans
ENSMUSG00000031403Dkc19790.763ENSCJAG00000004210DKC19790.562Callithrix_jacchus
ENSMUSG00000031403Dkc18482.258ENSCAFG00000009311-9776.861Canis_familiaris
ENSMUSG00000031403Dkc110086.180ENSCAFG00000019620-10086.564Canis_familiaris
ENSMUSG00000031403Dkc110086.180ENSCAFG00020008918-10086.564Canis_lupus_dingo
ENSMUSG00000031403Dkc18481.860ENSCAFG00020009379-9376.471Canis_lupus_dingo
ENSMUSG00000031403Dkc110083.667ENSCHIG00000017392DKC19788.235Capra_hircus
ENSMUSG00000031403Dkc19688.889ENSTSYG00000007681DKC19688.889Carlito_syrichta
ENSMUSG00000031403Dkc18887.973ENSCAPG00000003342DKC19991.034Cavia_aperea
ENSMUSG00000031403Dkc110091.813ENSCPOG00000008825DKC110092.008Cavia_porcellus
ENSMUSG00000031403Dkc110094.615ENSCCAG00000027418DKC19682.258Cebus_capucinus
ENSMUSG00000031403Dkc19790.342ENSCATG00000033602DKC19790.141Cercocebus_atys
ENSMUSG00000031403Dkc19989.764ENSCLAG00000000720DKC19691.429Chinchilla_lanigera
ENSMUSG00000031403Dkc19790.543ENSCSAG00000006706DKC19790.342Chlorocebus_sabaeus
ENSMUSG00000031403Dkc18784.354ENSCPBG00000005858DKC18986.698Chrysemys_picta_bellii
ENSMUSG00000031403Dkc18375.294ENSCING00000004599-9071.030Ciona_intestinalis
ENSMUSG00000031403Dkc18276.190ENSCSAVG00000010047-8877.975Ciona_savignyi
ENSMUSG00000031403Dkc19790.543ENSCANG00000027987DKC19790.342Colobus_angolensis_palliatus
ENSMUSG00000031403Dkc110067.583ENSCGRG00001016789-9868.712Cricetulus_griseus_chok1gshd
ENSMUSG00000031403Dkc110094.932ENSCGRG00001014574-10094.542Cricetulus_griseus_chok1gshd
ENSMUSG00000031403Dkc110094.932ENSCGRG00000016075-10094.542Cricetulus_griseus_crigri
ENSMUSG00000031403Dkc19968.127ENSCGRG00000014809-9668.560Cricetulus_griseus_crigri
ENSMUSG00000031403Dkc19472.535ENSCSEG00000012633dkc19578.747Cynoglossus_semilaevis
ENSMUSG00000031403Dkc17885.464ENSCVAG00000010155dkc18479.684Cyprinodon_variegatus
ENSMUSG00000031403Dkc17885.965ENSDARG00000016484dkc18579.638Danio_rerio
ENSMUSG00000031403Dkc110089.474ENSDNOG00000004218DKC110089.279Dasypus_novemcinctus
ENSMUSG00000031403Dkc110097.308ENSDORG00000013566-10097.308Dipodomys_ordii
ENSMUSG00000031403Dkc19261.786FBgn0259937Nop60B9866.518Drosophila_melanogaster
ENSMUSG00000031403Dkc110081.000ENSETEG00000016095DKC19586.052Echinops_telfairi
ENSMUSG00000031403Dkc19764.605ENSEBUG00000015962dkc19981.911Eptatretus_burgeri
ENSMUSG00000031403Dkc110088.462ENSEASG00005007484DKC110087.692Equus_asinus_asinus
ENSMUSG00000031403Dkc110088.462ENSECAG00000023524DKC110087.692Equus_caballus
ENSMUSG00000031403Dkc18390.353ENSEEUG00000003323DKC19990.353Erinaceus_europaeus
ENSMUSG00000031403Dkc110070.667ENSELUG00000014538dkc18880.734Esox_lucius
ENSMUSG00000031403Dkc110088.063ENSFCAG00000006577DKC110088.258Felis_catus
ENSMUSG00000031403Dkc18683.521ENSFALG00000011496DKC18583.221Ficedula_albicollis
ENSMUSG00000031403Dkc19689.634ENSFDAG00000002516DKC19790.244Fukomys_damarensis
ENSMUSG00000031403Dkc18680.137ENSFHEG00000004627dkc18580.137Fundulus_heteroclitus
ENSMUSG00000031403Dkc17783.376ENSGMOG00000017277dkc110083.376Gadus_morhua
ENSMUSG00000031403Dkc18584.828ENSGALG00000005054DKC18583.900Gallus_gallus
ENSMUSG00000031403Dkc18680.365ENSGAFG00000011486dkc17380.365Gambusia_affinis
ENSMUSG00000031403Dkc19272.760ENSGACG00000004373dkc19689.058Gasterosteus_aculeatus
ENSMUSG00000031403Dkc18784.580ENSGAGG00000011330DKC18485.261Gopherus_agassizii
ENSMUSG00000031403Dkc19791.147ENSGGOG00000001045DKC19790.946Gorilla_gorilla
ENSMUSG00000031403Dkc110069.667ENSHBUG00000012436dkc18680.317Haplochromis_burtoni
ENSMUSG00000031403Dkc19789.000ENSHGLG00000000649DKC19790.600Heterocephalus_glaber_female
ENSMUSG00000031403Dkc19688.866ENSHGLG00100001153DKC19790.486Heterocephalus_glaber_male
ENSMUSG00000031403Dkc17886.329ENSHCOG00000021099dkc18680.272Hippocampus_comes
ENSMUSG00000031403Dkc19874.850ENSIPUG00000010309dkc18878.925Ictalurus_punctatus
ENSMUSG00000031403Dkc19194.206ENSSTOG00000001074-9694.206Ictidomys_tridecemlineatus
ENSMUSG00000031403Dkc110083.041ENSSTOG00000020149-10082.846Ictidomys_tridecemlineatus
ENSMUSG00000031403Dkc19781.162ENSSTOG00000011904-9380.962Ictidomys_tridecemlineatus
ENSMUSG00000031403Dkc110096.923ENSJJAG00000010086-10096.923Jaculus_jaculus
ENSMUSG00000031403Dkc19461.765ENSJJAG00000008207-9669.281Jaculus_jaculus
ENSMUSG00000031403Dkc18678.815ENSKMAG00000008010dkc18678.281Kryptolebias_marmoratus
ENSMUSG00000031403Dkc17885.714ENSLBEG00000019122dkc18683.255Labrus_bergylta
ENSMUSG00000031403Dkc18782.393ENSLACG00000014025DKC19188.442Latimeria_chalumnae
ENSMUSG00000031403Dkc19377.413ENSLOCG00000013713dkc19978.439Lepisosteus_oculatus
ENSMUSG00000031403Dkc19988.845ENSLAFG00000000221DKC19988.845Loxodonta_africana
ENSMUSG00000031403Dkc19790.342ENSMFAG00000032398DKC18390.141Macaca_fascicularis
ENSMUSG00000031403Dkc19790.543ENSMMUG00000005768DKC19790.342Macaca_mulatta
ENSMUSG00000031403Dkc19790.543ENSMNEG00000034503DKC19790.342Macaca_nemestrina
ENSMUSG00000031403Dkc19790.543ENSMLEG00000034422DKC19790.342Mandrillus_leucophaeus
ENSMUSG00000031403Dkc19372.598ENSMAMG00000005427dkc18986.683Mastacembelus_armatus
ENSMUSG00000031403Dkc110070.000ENSMZEG00005014503dkc18680.543Maylandia_zebra
ENSMUSG00000031403Dkc17885.176ENSMGAG00000009238DKC18783.951Meleagris_gallopavo
ENSMUSG00000031403Dkc110098.846ENSMAUG00000016454-10098.846Mesocricetus_auratus
ENSMUSG00000031403Dkc19789.022ENSMICG00000038751-9788.822Microcebus_murinus
ENSMUSG00000031403Dkc18681.633ENSMICG00000002818-9983.242Microcebus_murinus
ENSMUSG00000031403Dkc110095.000ENSMOCG00000001169-10095.000Microtus_ochrogaster
ENSMUSG00000031403Dkc19272.401ENSMMOG00000020348dkc18785.678Mola_mola
ENSMUSG00000031403Dkc110076.333ENSMODG00000009243DKC17885.463Monodelphis_domestica
ENSMUSG00000031403Dkc18780.726ENSMALG00000009454dkc18580.726Monopterus_albus
ENSMUSG00000031403Dkc110087.476MGP_CAROLIEiJ_G0033191Dkc110096.622Mus_caroli
ENSMUSG00000031403Dkc110099.231MGP_PahariEiJ_G0031735Dkc110099.231Mus_pahari
ENSMUSG00000031403Dkc1100100.000MGP_SPRETEiJ_G0034351Dkc1100100.000Mus_spretus
ENSMUSG00000031403Dkc19788.867ENSMPUG00000016136DKC19388.867Mustela_putorius_furo
ENSMUSG00000031403Dkc110081.667ENSMLUG00000011918DKC19781.584Myotis_lucifugus
ENSMUSG00000031403Dkc110097.308ENSNGAG00000015724-10097.308Nannospalax_galili
ENSMUSG00000031403Dkc17886.869ENSNBRG00000005638dkc18086.432Neolamprologus_brichardi
ENSMUSG00000031403Dkc19791.331ENSNLEG00000014323DKC19691.129Nomascus_leucogenys
ENSMUSG00000031403Dkc19377.385ENSMEUG00000001066DKC19681.222Notamacropus_eugenii
ENSMUSG00000031403Dkc19873.559ENSOPRG00000005248DKC19774.438Ochotona_princeps
ENSMUSG00000031403Dkc110082.759ENSODEG00000011816-9092.157Octodon_degus
ENSMUSG00000031403Dkc110098.077ENSODEG00000000549-10098.077Octodon_degus
ENSMUSG00000031403Dkc18781.448ENSONIG00000013889dkc18681.448Oreochromis_niloticus
ENSMUSG00000031403Dkc16363.050ENSOANG00000022295-9562.573Ornithorhynchus_anatinus
ENSMUSG00000031403Dkc19085.288ENSOANG00000008713-9685.288Ornithorhynchus_anatinus
ENSMUSG00000031403Dkc19791.700ENSOCUG00000012646DKC19691.700Oryctolagus_cuniculus
ENSMUSG00000031403Dkc17785.934ENSORLG00000018748dkc17885.496Oryzias_latipes
ENSMUSG00000031403Dkc18679.412ENSOMEG00000005786dkc18286.192Oryzias_melastigma
ENSMUSG00000031403Dkc19789.328ENSOGAG00000003399DKC19788.538Otolemur_garnettii
ENSMUSG00000031403Dkc110082.000ENSOARG00000003047DKC19787.221Ovis_aries
ENSMUSG00000031403Dkc19790.744ENSPPAG00000023820DKC19790.543Pan_paniscus
ENSMUSG00000031403Dkc110083.333ENSPPRG00000009104DKC110088.258Panthera_pardus
ENSMUSG00000031403Dkc19883.390ENSPTIG00000017469DKC19986.561Panthera_tigris_altaica
ENSMUSG00000031403Dkc19791.147ENSPTRG00000043416-8490.946Pan_troglodytes
ENSMUSG00000031403Dkc19791.147ENSPTRG00000022449DKC19790.946Pan_troglodytes
ENSMUSG00000031403Dkc19790.543ENSPANG00000011978DKC19790.342Papio_anubis
ENSMUSG00000031403Dkc19375.362ENSPKIG00000008443dkc19080.920Paramormyrops_kingsleyae
ENSMUSG00000031403Dkc18977.941ENSPSIG00000013765DKC18692.737Pelodiscus_sinensis
ENSMUSG00000031403Dkc18677.578ENSPMGG00000004097dkc18277.232Periophthalmus_magnuspinnatus
ENSMUSG00000031403Dkc110086.897ENSPEMG00000013348Dkc110098.462Peromyscus_maniculatus_bairdii
ENSMUSG00000031403Dkc110077.000ENSPCIG00000016706DKC17685.777Phascolarctos_cinereus
ENSMUSG00000031403Dkc18680.638ENSPFOG00000018653dkc18580.638Poecilia_formosa
ENSMUSG00000031403Dkc18680.638ENSPLAG00000003272dkc17780.638Poecilia_latipinna
ENSMUSG00000031403Dkc18680.638ENSPMEG00000010413dkc18580.638Poecilia_mexicana
ENSMUSG00000031403Dkc18680.866ENSPREG00000004100dkc18778.478Poecilia_reticulata
ENSMUSG00000031403Dkc19690.854ENSPPYG00000020892DKC19790.650Pongo_abelii
ENSMUSG00000031403Dkc17393.316ENSPCAG00000015034DKC17393.316Procavia_capensis
ENSMUSG00000031403Dkc19790.726ENSPCOG00000026874DKC19690.524Propithecus_coquereli
ENSMUSG00000031403Dkc19987.230ENSPVAG00000009222DKC19986.640Pteropus_vampyrus
ENSMUSG00000031403Dkc18679.241ENSPNYG00000020063dkc18878.889Pundamilia_nyererei
ENSMUSG00000031403Dkc19180.388ENSPNAG00000005780dkc19276.956Pygocentrus_nattereri
ENSMUSG00000031403Dkc19982.101ENSRNOG00000055562Dkc19982.101Rattus_norvegicus
ENSMUSG00000031403Dkc19790.543ENSRBIG00000028457DKC18390.342Rhinopithecus_bieti
ENSMUSG00000031403Dkc19790.543ENSRROG00000044780DKC19790.342Rhinopithecus_roxellana
ENSMUSG00000031403Dkc18762.921YLR175W-9364.889Saccharomyces_cerevisiae
ENSMUSG00000031403Dkc110090.680ENSSBOG00000033746DKC110090.485Saimiri_boliviensis_boliviensis
ENSMUSG00000031403Dkc110076.667ENSSHAG00000002463DKC19785.621Sarcophilus_harrisii
ENSMUSG00000031403Dkc110072.000ENSSFOG00015009585dkc19079.487Scleropages_formosus
ENSMUSG00000031403Dkc19673.373ENSSMAG00000002552dkc19774.162Scophthalmus_maximus
ENSMUSG00000031403Dkc18680.734ENSSDUG00000009963dkc18978.355Seriola_dumerili
ENSMUSG00000031403Dkc17787.023ENSSLDG00000019342dkc18386.181Seriola_lalandi_dorsalis
ENSMUSG00000031403Dkc19283.015ENSSARG00000001822DKC19482.803Sorex_araneus
ENSMUSG00000031403Dkc110074.667ENSSPUG00000018907DKC18682.781Sphenodon_punctatus
ENSMUSG00000031403Dkc18679.638ENSSPAG00000002585dkc18179.638Stegastes_partitus
ENSMUSG00000031403Dkc110087.572ENSSSCG00000012823DKC110087.763Sus_scrofa
ENSMUSG00000031403Dkc18981.416ENSTGUG00000006781DKC110081.416Taeniopygia_guttata
ENSMUSG00000031403Dkc18680.952ENSTRUG00000004413dkc18680.952Takifugu_rubripes
ENSMUSG00000031403Dkc18665.101ENSTNIG00000002582dkc19163.966Tetraodon_nigroviridis
ENSMUSG00000031403Dkc16790.173ENSTBEG00000011262DKC19590.173Tupaia_belangeri
ENSMUSG00000031403Dkc110078.667ENSTTRG00000008089DKC17392.131Tursiops_truncatus
ENSMUSG00000031403Dkc19589.293ENSUAMG00000022721DKC19393.197Ursus_americanus
ENSMUSG00000031403Dkc19588.889ENSUMAG00000016899DKC19297.354Ursus_maritimus
ENSMUSG00000031403Dkc110082.759ENSVPAG00000003259-65100.000Vicugna_pacos
ENSMUSG00000031403Dkc19772.581ENSVVUG00000021671-9171.976Vulpes_vulpes
ENSMUSG00000031403Dkc19984.512ENSVVUG00000020734-8985.277Vulpes_vulpes
ENSMUSG00000031403Dkc18882.000ENSXETG00000032517DKC18483.908Xenopus_tropicalis
ENSMUSG00000031403Dkc18680.227ENSXCOG00000005498dkc19180.227Xiphophorus_couchianus
ENSMUSG00000031403Dkc18680.638ENSXMAG00000004919dkc18580.638Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000454snoRNA guided rRNA pseudouridine synthesis-ISOProcess
GO:0000455enzyme-directed rRNA pseudouridine synthesis-ISOProcess
GO:0000495box H/ACA snoRNA 3'-end processing21873635.IBAProcess
GO:0001522pseudouridine synthesis-IEAProcess
GO:0001650fibrillar center-ISOComponent
GO:0003720telomerase activity-ISOFunction
GO:0003720telomerase activity-ISOFunction
GO:0003723RNA binding-ISOFunction
GO:0005515protein binding23685356.IPIFunction
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005697telomerase holoenzyme complex-ISOComponent
GO:0005730nucleolus23726835.IDAComponent
GO:0005730nucleolus-ISOComponent
GO:0006364rRNA processing-IEAProcess
GO:0006396RNA processing-IEAProcess
GO:0007004telomere maintenance via telomerase-ISOProcess
GO:0008284positive regulation of cell proliferation-ISOProcess
GO:0009451RNA modification-IEAProcess
GO:0009982pseudouridine synthase activity21873635.IBAFunction
GO:0009982pseudouridine synthase activity-ISOFunction
GO:0015030Cajal body23726835.IDAComponent
GO:0015030Cajal body-ISOComponent
GO:0016853isomerase activity-IEAFunction
GO:0031118rRNA pseudouridine synthesis21873635.IBAProcess
GO:0031118rRNA pseudouridine synthesis15240872.23726835.IMPProcess
GO:0031120snRNA pseudouridine synthesis21873635.IBAProcess
GO:0031429box H/ACA snoRNP complex21873635.IBAComponent
GO:0031429box H/ACA snoRNP complex-ISOComponent
GO:0032212positive regulation of telomere maintenance via telomerase15240872.IMPProcess
GO:0033979box H/ACA snoRNA metabolic process23726835.IMPProcess
GO:0034513box H/ACA snoRNA binding-ISOFunction
GO:0042254ribosome biogenesis-IEAProcess
GO:0051973positive regulation of telomerase activity15240872.IMPProcess
GO:0051973positive regulation of telomerase activity-ISOProcess
GO:0070034telomerase RNA binding-ISOFunction
GO:0090661box H/ACA telomerase RNP complex-ISOComponent
GO:0090666scaRNA localization to Cajal body-ISOProcess
GO:0090669telomerase RNA stabilization-ISOProcess
GO:1904851positive regulation of establishment of protein localization to telomere-ISOProcess
GO:1904872regulation of telomerase RNA localization to Cajal body-ISOProcess
GO:1904874positive regulation of telomerase RNA localization to Cajal body-ISOProcess
GO:1990481mRNA pseudouridine synthesis21873635.IBAProcess

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