EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000031586 (Gene tree)
Gene ID: 19663
Gene Symbol: Rbpms
Alias: 2010300K22Rik|2700019M19Rik|hermes
Full Name: RNA binding protein gene with multiple splicing
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 147221 bases
Position: chr8:33782643-33929863
Accession: 1334446
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000138420	RRM_1	PF00076.22	1.7e-11	1	1
ENSMUSP00000033994	RRM_1	PF00076.22	2.5e-11	1	1
ENSMUSP00000055813	RRM_1	PF00076.22	2.7e-11	1	1
ENSMUSP00000140387	RRM_1	PF00076.22	2.7e-11	1	1
ENSMUSP00000033995	RRM_1	PF00076.22	2.9e-11	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000182987	-	1385	-	ENSMUSP00000138483	197 (aa)	-	Q9WVB0
ENSMUST00000182926	-	405	-	ENSMUSP00000138361	58 (aa)	-	S4R1T1
ENSMUST00000183062	-	459	-	ENSMUSP00000138726	64 (aa)	-	S4R2P3
ENSMUST00000033995	-	1039	-	ENSMUSP00000033995	220 (aa)	-	Q9WVB0
ENSMUST00000033994	-	2375	XM_006509035	ENSMUSP00000033994	191 (aa)	XP_006509098	T1ECW4
ENSMUST00000183088	-	592	-	ENSMUSP00000138420	159 (aa)	-	S4R1Y2
ENSMUST00000053251	-	2466	XM_006509037	ENSMUSP00000055813	197 (aa)	XP_006509100	Q9WVB0
ENSMUST00000183122	-	525	-	-	- (aa)	-	-
ENSMUST00000183336	-	549	-	ENSMUSP00000138533	70 (aa)	-	S4R280
ENSMUST00000182871	-	317	-	-	- (aa)	-	-
ENSMUST00000231786	-	516	-	-	- (aa)	-	-
ENSMUST00000191473	-	2547	-	ENSMUSP00000140387	197 (aa)	-	Q9WVB0
ENSMUST00000182184	-	643	-	-	- (aa)	-	-
ENSMUST00000231942	-	2534	-	-	- (aa)	-	-
ENSMUST00000182256	-	865	-	ENSMUSP00000138140	93 (aa)	-	S4R1A1

Gene Model

Click here to download ENSMUSG00000031586's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000031586's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000031586	Rbpms	87	78.417	ENSMUSG00000032387	Rbpms2	90	69.519

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000031586	Rbpms	100	99.091	ENSG00000157110	RBPMS	100	100.000	Homo_sapiens
ENSMUSG00000031586	Rbpms	99	83.077	ENSAPOG00000022304	RBPMS	99	78.974	Acanthochromis_polyacanthus
ENSMUSG00000031586	Rbpms	93	97.561	ENSAMEG00000001522	RBPMS	93	97.561	Ailuropoda_melanoleuca
ENSMUSG00000031586	Rbpms	74	87.179	ENSACIG00000011395	RBPMS	75	77.857	Amphilophus_citrinellus
ENSMUSG00000031586	Rbpms	99	83.077	ENSAOCG00000007731	RBPMS	99	78.974	Amphiprion_ocellaris
ENSMUSG00000031586	Rbpms	99	83.077	ENSAPEG00000023543	RBPMS	99	78.974	Amphiprion_percula
ENSMUSG00000031586	Rbpms	99	83.077	ENSATEG00000018184	RBPMS	99	78.974	Anabas_testudineus
ENSMUSG00000031586	Rbpms	100	92.424	ENSACAG00000003012	RBPMS	100	87.879	Anolis_carolinensis
ENSMUSG00000031586	Rbpms	100	99.091	ENSANAG00000028150	RBPMS	100	99.091	Aotus_nancymaae
ENSMUSG00000031586	Rbpms	99	83.590	ENSACLG00000002926	RBPMS	99	79.487	Astatotilapia_calliptera
ENSMUSG00000031586	Rbpms	98	81.959	ENSAMXG00000033491	rbpms	98	78.646	Astyanax_mexicanus
ENSMUSG00000031586	Rbpms	100	97.727	ENSBTAG00000033727	RBPMS	100	97.727	Bos_taurus
ENSMUSG00000031586	Rbpms	100	98.636	ENSCJAG00000012366	RBPMS	100	98.636	Callithrix_jacchus
ENSMUSG00000031586	Rbpms	100	99.091	ENSCAFG00000006503	RBPMS	100	99.091	Canis_familiaris
ENSMUSG00000031586	Rbpms	100	99.091	ENSCAFG00020001031	RBPMS	100	99.091	Canis_lupus_dingo
ENSMUSG00000031586	Rbpms	100	91.414	ENSCHIG00000027156	RBPMS	100	87.374	Capra_hircus
ENSMUSG00000031586	Rbpms	69	100.000	ENSTSYG00000013982	RBPMS	83	100.000	Carlito_syrichta
ENSMUSG00000031586	Rbpms	100	98.182	ENSCPOG00000038597	RBPMS	100	98.182	Cavia_porcellus
ENSMUSG00000031586	Rbpms	100	98.477	ENSCCAG00000033226	RBPMS	100	98.477	Cebus_capucinus
ENSMUSG00000031586	Rbpms	100	99.091	ENSCATG00000036486	RBPMS	100	99.091	Cercocebus_atys
ENSMUSG00000031586	Rbpms	90	99.495	ENSCLAG00000001518	RBPMS	100	99.495	Chinchilla_lanigera
ENSMUSG00000031586	Rbpms	100	99.091	ENSCSAG00000015838	RBPMS	100	99.091	Chlorocebus_sabaeus
ENSMUSG00000031586	Rbpms	90	98.990	ENSCHOG00000008745	RBPMS	100	98.990	Choloepus_hoffmanni
ENSMUSG00000031586	Rbpms	97	92.670	ENSCPBG00000013437	RBPMS	97	87.958	Chrysemys_picta_bellii
ENSMUSG00000031586	Rbpms	90	99.495	ENSCANG00000034997	RBPMS	100	99.495	Colobus_angolensis_palliatus
ENSMUSG00000031586	Rbpms	100	100.000	ENSCGRG00001002814	Rbpms	100	100.000	Cricetulus_griseus_chok1gshd
ENSMUSG00000031586	Rbpms	90	100.000	ENSCGRG00000006095	Rbpms	100	100.000	Cricetulus_griseus_crigri
ENSMUSG00000031586	Rbpms	97	83.854	ENSCSEG00000002777	rbpms	99	80.328	Cynoglossus_semilaevis
ENSMUSG00000031586	Rbpms	99	83.077	ENSCVAG00000013975	RBPMS	99	78.974	Cyprinodon_variegatus
ENSMUSG00000031586	Rbpms	85	73.333	ENSDARG00000099396	rbpms	100	64.327	Danio_rerio
ENSMUSG00000031586	Rbpms	100	95.909	ENSDNOG00000008126	RBPMS	100	91.818	Dasypus_novemcinctus
ENSMUSG00000031586	Rbpms	100	98.636	ENSETEG00000017582	RBPMS	100	98.636	Echinops_telfairi
ENSMUSG00000031586	Rbpms	90	99.495	ENSEASG00005016962	RBPMS	99	99.495	Equus_asinus_asinus
ENSMUSG00000031586	Rbpms	100	98.636	ENSECAG00000020735	RBPMS	100	98.636	Equus_caballus
ENSMUSG00000031586	Rbpms	99	80.000	ENSELUG00000009787	rbpms	99	76.923	Esox_lucius
ENSMUSG00000031586	Rbpms	100	98.636	ENSFCAG00000025639	-	100	98.636	Felis_catus
ENSMUSG00000031586	Rbpms	100	49.746	ENSFCAG00000022292	-	85	58.333	Felis_catus
ENSMUSG00000031586	Rbpms	90	98.990	ENSFDAG00000012078	RBPMS	100	98.990	Fukomys_damarensis
ENSMUSG00000031586	Rbpms	99	83.077	ENSFHEG00000000618	rbpms	99	78.974	Fundulus_heteroclitus
ENSMUSG00000031586	Rbpms	81	56.589	ENSGMOG00000009646	-	97	56.849	Gadus_morhua
ENSMUSG00000031586	Rbpms	99	83.077	ENSGAFG00000016566	RBPMS	99	78.974	Gambusia_affinis
ENSMUSG00000031586	Rbpms	99	73.846	ENSGACG00000019471	rbpms	99	73.333	Gasterosteus_aculeatus
ENSMUSG00000031586	Rbpms	74	91.525	ENSGAGG00000023634	RBPMS	55	88.889	Gopherus_agassizii
ENSMUSG00000031586	Rbpms	99	83.590	ENSHBUG00000005888	RBPMS	99	79.487	Haplochromis_burtoni
ENSMUSG00000031586	Rbpms	100	99.091	ENSHGLG00000002303	RBPMS	100	99.091	Heterocephalus_glaber_female
ENSMUSG00000031586	Rbpms	90	99.495	ENSHGLG00100008787	RBPMS	100	99.495	Heterocephalus_glaber_male
ENSMUSG00000031586	Rbpms	97	84.896	ENSHCOG00000005774	rbpms	99	80.729	Hippocampus_comes
ENSMUSG00000031586	Rbpms	97	79.167	ENSIPUG00000012459	RBPMS	99	76.562	Ictalurus_punctatus
ENSMUSG00000031586	Rbpms	100	98.636	ENSSTOG00000026546	RBPMS	100	98.636	Ictidomys_tridecemlineatus
ENSMUSG00000031586	Rbpms	100	98.636	ENSJJAG00000014024	Rbpms	100	98.636	Jaculus_jaculus
ENSMUSG00000031586	Rbpms	76	83.471	ENSKMAG00000006377	RBPMS	88	70.621	Kryptolebias_marmoratus
ENSMUSG00000031586	Rbpms	99	83.077	ENSLBEG00000027989	RBPMS	97	82.286	Labrus_bergylta
ENSMUSG00000031586	Rbpms	90	88.811	ENSLOCG00000013199	RBPMS	98	82.222	Lepisosteus_oculatus
ENSMUSG00000031586	Rbpms	100	98.636	ENSLAFG00000000209	RBPMS	100	98.636	Loxodonta_africana
ENSMUSG00000031586	Rbpms	100	99.091	ENSMFAG00000036911	RBPMS	100	99.091	Macaca_fascicularis
ENSMUSG00000031586	Rbpms	100	99.091	ENSMMUG00000000458	RBPMS	100	99.091	Macaca_mulatta
ENSMUSG00000031586	Rbpms	100	99.091	ENSMNEG00000043805	RBPMS	100	99.091	Macaca_nemestrina
ENSMUSG00000031586	Rbpms	90	99.495	ENSMLEG00000015635	RBPMS	100	99.495	Mandrillus_leucophaeus
ENSMUSG00000031586	Rbpms	69	90.000	ENSMAMG00000004604	RBPMS	68	85.271	Mastacembelus_armatus
ENSMUSG00000031586	Rbpms	99	83.590	ENSMZEG00005000698	RBPMS	97	81.818	Maylandia_zebra
ENSMUSG00000031586	Rbpms	89	95.455	ENSMGAG00000005088	RBPMS	99	83.673	Meleagris_gallopavo
ENSMUSG00000031586	Rbpms	100	100.000	ENSMAUG00000018892	Rbpms	100	100.000	Mesocricetus_auratus
ENSMUSG00000031586	Rbpms	100	96.954	ENSMICG00000001295	RBPMS	100	96.954	Microcebus_murinus
ENSMUSG00000031586	Rbpms	100	100.000	ENSMOCG00000014009	Rbpms	100	100.000	Microtus_ochrogaster
ENSMUSG00000031586	Rbpms	90	88.112	ENSMMOG00000012036	RBPMS	72	77.457	Mola_mola
ENSMUSG00000031586	Rbpms	96	93.158	ENSMODG00000019006	RBPMS	91	87.629	Monodelphis_domestica
ENSMUSG00000031586	Rbpms	99	82.051	ENSMALG00000003261	RBPMS	99	77.949	Monopterus_albus
ENSMUSG00000031586	Rbpms	100	100.000	MGP_CAROLIEiJ_G0030970	Rbpms	100	100.000	Mus_caroli
ENSMUSG00000031586	Rbpms	100	99.545	MGP_PahariEiJ_G0021439	Rbpms	100	99.545	Mus_pahari
ENSMUSG00000031586	Rbpms	100	100.000	MGP_SPRETEiJ_G0032087	Rbpms	100	100.000	Mus_spretus
ENSMUSG00000031586	Rbpms	93	97.561	ENSMPUG00000011314	RBPMS	93	97.561	Mustela_putorius_furo
ENSMUSG00000031586	Rbpms	100	97.462	ENSMLUG00000009391	RBPMS	100	98.101	Myotis_lucifugus
ENSMUSG00000031586	Rbpms	100	99.091	ENSNGAG00000011141	Rbpms	100	99.091	Nannospalax_galili
ENSMUSG00000031586	Rbpms	90	88.112	ENSNBRG00000003313	RBPMS	97	81.818	Neolamprologus_brichardi
ENSMUSG00000031586	Rbpms	100	98.636	ENSNLEG00000036183	-	100	98.636	Nomascus_leucogenys
ENSMUSG00000031586	Rbpms	100	78.636	ENSOPRG00000013151	RBPMS	100	78.636	Ochotona_princeps
ENSMUSG00000031586	Rbpms	100	99.091	ENSODEG00000006700	RBPMS	100	99.091	Octodon_degus
ENSMUSG00000031586	Rbpms	88	89.286	ENSONIG00000007546	RBPMS	100	81.818	Oreochromis_niloticus
ENSMUSG00000031586	Rbpms	100	98.636	ENSOCUG00000008572	RBPMS	100	98.636	Oryctolagus_cuniculus
ENSMUSG00000031586	Rbpms	100	82.234	ENSORLG00000004135	-	99	77.949	Oryzias_latipes
ENSMUSG00000031586	Rbpms	99	82.564	ENSORLG00020016179	RBPMS	99	78.462	Oryzias_latipes_hni
ENSMUSG00000031586	Rbpms	99	82.564	ENSORLG00015013770	RBPMS	99	78.462	Oryzias_latipes_hsok
ENSMUSG00000031586	Rbpms	99	82.564	ENSOMEG00000005044	RBPMS	99	78.462	Oryzias_melastigma
ENSMUSG00000031586	Rbpms	92	96.703	ENSOGAG00000030298	RBPMS	81	96.703	Otolemur_garnettii
ENSMUSG00000031586	Rbpms	70	100.000	ENSOARG00000010366	RBPMS	94	88.722	Ovis_aries
ENSMUSG00000031586	Rbpms	90	99.495	ENSPPAG00000033108	RBPMS	100	99.495	Pan_paniscus
ENSMUSG00000031586	Rbpms	100	98.636	ENSPPRG00000004836	RBPMS	100	98.636	Panthera_pardus
ENSMUSG00000031586	Rbpms	90	99.495	ENSPTIG00000015964	RBPMS	90	99.495	Panthera_tigris_altaica
ENSMUSG00000031586	Rbpms	100	99.091	ENSPTRG00000020135	RBPMS	100	99.091	Pan_troglodytes
ENSMUSG00000031586	Rbpms	100	99.091	ENSPANG00000008143	RBPMS	100	99.091	Papio_anubis
ENSMUSG00000031586	Rbpms	96	83.158	ENSPKIG00000000535	-	97	79.474	Paramormyrops_kingsleyae
ENSMUSG00000031586	Rbpms	96	80.000	ENSPKIG00000004836	rbpms	99	76.842	Paramormyrops_kingsleyae
ENSMUSG00000031586	Rbpms	89	94.286	ENSPSIG00000006136	RBPMS	99	89.143	Pelodiscus_sinensis
ENSMUSG00000031586	Rbpms	87	89.928	ENSPMGG00000018012	RBPMS	91	70.936	Periophthalmus_magnuspinnatus
ENSMUSG00000031586	Rbpms	100	98.485	ENSPEMG00000021130	Rbpms	100	98.485	Peromyscus_maniculatus_bairdii
ENSMUSG00000031586	Rbpms	97	89.610	ENSPCIG00000019298	-	81	79.500	Phascolarctos_cinereus
ENSMUSG00000031586	Rbpms	99	83.077	ENSPFOG00000017158	RBPMS	99	78.974	Poecilia_formosa
ENSMUSG00000031586	Rbpms	99	83.077	ENSPLAG00000010767	RBPMS	99	78.974	Poecilia_latipinna
ENSMUSG00000031586	Rbpms	99	83.077	ENSPMEG00000009788	RBPMS	99	78.974	Poecilia_mexicana
ENSMUSG00000031586	Rbpms	99	83.077	ENSPREG00000016959	RBPMS	99	78.974	Poecilia_reticulata
ENSMUSG00000031586	Rbpms	100	99.091	ENSPPYG00000018487	RBPMS	100	99.091	Pongo_abelii
ENSMUSG00000031586	Rbpms	69	98.182	ENSPCAG00000013493	-	100	98.182	Procavia_capensis
ENSMUSG00000031586	Rbpms	100	86.364	ENSPCOG00000015948	RBPMS	100	86.364	Propithecus_coquereli
ENSMUSG00000031586	Rbpms	99	97.260	ENSPVAG00000001661	RBPMS	99	97.260	Pteropus_vampyrus
ENSMUSG00000031586	Rbpms	99	83.590	ENSPNYG00000001172	RBPMS	97	81.818	Pundamilia_nyererei
ENSMUSG00000031586	Rbpms	98	82.474	ENSPNAG00000029160	RBPMS	99	78.351	Pygocentrus_nattereri
ENSMUSG00000031586	Rbpms	100	100.000	ENSRNOG00000013328	Rbpms	100	100.000	Rattus_norvegicus
ENSMUSG00000031586	Rbpms	98	92.593	ENSRBIG00000038218	RBPMS	100	98.857	Rhinopithecus_bieti
ENSMUSG00000031586	Rbpms	100	99.091	ENSRROG00000042518	RBPMS	100	99.091	Rhinopithecus_roxellana
ENSMUSG00000031586	Rbpms	100	98.636	ENSSBOG00000026670	RBPMS	100	98.636	Saimiri_boliviensis_boliviensis
ENSMUSG00000031586	Rbpms	98	90.206	ENSSHAG00000010114	RBPMS	99	85.567	Sarcophilus_harrisii
ENSMUSG00000031586	Rbpms	100	82.234	ENSSFOG00015000417	rbpms	100	78.680	Scleropages_formosus
ENSMUSG00000031586	Rbpms	88	84.286	ENSSFOG00015017481	-	99	76.316	Scleropages_formosus
ENSMUSG00000031586	Rbpms	100	83.249	ENSSMAG00000010871	rbpms	100	79.188	Scophthalmus_maximus
ENSMUSG00000031586	Rbpms	99	83.077	ENSSDUG00000010894	RBPMS	99	78.974	Seriola_dumerili
ENSMUSG00000031586	Rbpms	99	83.077	ENSSLDG00000012916	RBPMS	99	78.974	Seriola_lalandi_dorsalis
ENSMUSG00000031586	Rbpms	100	95.000	ENSSARG00000000274	RBPMS	100	90.909	Sorex_araneus
ENSMUSG00000031586	Rbpms	98	90.256	ENSSPUG00000017525	RBPMS	74	85.641	Sphenodon_punctatus
ENSMUSG00000031586	Rbpms	100	62.944	ENSSPAG00000004777	rbpms	93	78.289	Stegastes_partitus
ENSMUSG00000031586	Rbpms	100	98.636	ENSSSCG00000015846	RBPMS	100	98.636	Sus_scrofa
ENSMUSG00000031586	Rbpms	97	92.147	ENSTGUG00000001776	RBPMS	100	87.435	Taeniopygia_guttata
ENSMUSG00000031586	Rbpms	100	82.741	ENSTRUG00000000041	RBPMS	98	79.688	Takifugu_rubripes
ENSMUSG00000031586	Rbpms	100	96.818	ENSTTRG00000012451	RBPMS	100	96.818	Tursiops_truncatus
ENSMUSG00000031586	Rbpms	78	84.559	ENSUAMG00000026353	RBPMS	89	84.559	Ursus_americanus
ENSMUSG00000031586	Rbpms	90	98.995	ENSUMAG00000007347	RBPMS	96	98.995	Ursus_maritimus
ENSMUSG00000031586	Rbpms	90	99.495	ENSVPAG00000010991	RBPMS	100	99.495	Vicugna_pacos
ENSMUSG00000031586	Rbpms	100	99.091	ENSVVUG00000019770	RBPMS	100	99.091	Vulpes_vulpes
ENSMUSG00000031586	Rbpms	89	92.571	ENSXETG00000011290	rbpms	100	87.429	Xenopus_tropicalis
ENSMUSG00000031586	Rbpms	100	75.127	ENSXCOG00000002436	RBPMS	99	71.066	Xiphophorus_couchianus
ENSMUSG00000031586	Rbpms	99	83.077	ENSXMAG00000027637	RBPMS	99	78.974	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003713	transcription coactivator activity	-	ISO	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006979	response to oxidative stress	-	ISO	Process
GO:0008143	poly(A) binding	-	ISO	Function
GO:0010494	cytoplasmic stress granule	-	ISO	Component
GO:0010862	positive regulation of pathway-restricted SMAD protein phosphorylation	-	ISO	Process
GO:0035614	snRNA stem-loop binding	21873635.	IBA	Function
GO:0042803	protein homodimerization activity	-	ISO	Function
GO:0060391	positive regulation of SMAD protein signal transduction	-	ISO	Process