EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000139675	-	1746	-	-	- (aa)	-	-
ENSMUST00000135471	-	511	-	-	- (aa)	-	-
ENSMUST00000034085	-	3625	XM_006531046	ENSMUSP00000034085	651 (aa)	XP_006531109	O88665
ENSMUST00000149841	-	667	-	-	- (aa)	-	-
ENSMUST00000131748	-	508	-	-	- (aa)	-	-
ENSMUST00000146370	-	422	-	-	- (aa)	-	-
ENSMUST00000145609	-	636	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu05225	Hepatocellular carcinoma	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000031660	Brd7	89	35.452	ENSMUSG00000057649	Brd9	85	51.934	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002039	p53 binding	-	ISO	Function
GO:0003713	transcription coactivator activity	-	ISO	Function
GO:0003714	transcription corepressor activity	19909775.	IDA	Function
GO:0003714	transcription corepressor activity	-	ISO	Function
GO:0005515	protein binding	10526152.15102471.19909775.	IPI	Function
GO:0005634	nucleus	10526152.	IPI	Component
GO:0005634	nucleus	11025449.	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006357	regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0008134	transcription factor binding	11025449.	ISO	Function
GO:0008285	negative regulation of cell proliferation	-	ISO	Process
GO:0016055	Wnt signaling pathway	-	IEA	Process
GO:0035066	positive regulation of histone acetylation	-	ISO	Process
GO:0042393	histone binding	-	ISO	Function
GO:0044212	transcription regulatory region DNA binding	-	ISO	Function
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:0070577	lysine-acetylated histone binding	-	ISO	Function
GO:2000134	negative regulation of G1/S transition of mitotic cell cycle	-	ISO	Process