EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000031696 (Gene tree)
Gene ID: 65114
Gene Symbol: Vps35
Alias: Mem3
Full Name: VPS35 retromer complex component
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 39411
Position: chr8: 85260392-85299802
Accession: 1890467
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000034131	-	3474	-	ENSMUSP00000034131	796 (aa)	-	Q9EQH3
ENSMUST00000211154	-	448	-	-	- (aa)	-	-
ENSMUST00000209228	-	308	-	-	- (aa)	-	-
ENSMUST00000209277	-	5002	-	-	- (aa)	-	-
ENSMUST00000211479	-	473	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000031696's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04144	Endocytosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000031696's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000031696	Vps35	100	99.372	ENSG00000069329	VPS35	100	99.372	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	15965486.18160348.18480253.18656452.20923837.21040701.23055941.23395371.23416069.24849652.27460146.	IPI	Function
GO:0005737	cytoplasm	17239604.	IDA	Component
GO:0005737	cytoplasm	26203154.	IMP	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005764	lysosome	-	ISO	Component
GO:0005768	endosome	26965651.	IDA	Component
GO:0005768	endosome	-	ISO	Component
GO:0005769	early endosome	-	ISO	Component
GO:0005770	late endosome	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006624	vacuolar protein processing	11112353.	ISA	Process
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0007040	lysosome organization	26203154.	IMP	Process
GO:0007416	synapse assembly	26521016.	EXP	Process
GO:0007416	synapse assembly	26521016.	IDA	Process
GO:0007416	synapse assembly	26521016.	IMP	Process
GO:0008565	protein transporter activity	21873635.	IBA	Function
GO:0010008	endosome membrane	-	ISO	Component
GO:0010628	positive regulation of gene expression	26203154.	IMP	Process
GO:0010628	positive regulation of gene expression	-	ISO	Process
GO:0010629	negative regulation of gene expression	26203154.	IMP	Process
GO:0010821	regulation of mitochondrion organization	-	ISO	Process
GO:0014069	postsynaptic density	17114649.	IDA	Component
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	11112353.	ISA	Component
GO:0030904	retromer complex	21873635.	IBA	Component
GO:0030904	retromer complex	21040701.	IDA	Component
GO:0030904	retromer complex	-	ISO	Component
GO:0030906	retromer, cargo-selective complex	-	ISO	Component
GO:0031647	regulation of protein stability	-	ISO	Process
GO:0031648	protein destabilization	26203154.	IMP	Process
GO:0031748	D1 dopamine receptor binding	27460146.	IPI	Function
GO:0031748	D1 dopamine receptor binding	-	ISO	Function
GO:0032268	regulation of cellular protein metabolic process	-	ISO	Process
GO:0032463	negative regulation of protein homooligomerization	26203154.	IMP	Process
GO:0033365	protein localization to organelle	26203154.	IMP	Process
GO:0036010	protein localization to endosome	-	ISO	Process
GO:0042147	retrograde transport, endosome to Golgi	21873635.	IBA	Process
GO:0042147	retrograde transport, endosome to Golgi	26203154.	IC	Process
GO:0042147	retrograde transport, endosome to Golgi	-	ISO	Process
GO:0043005	neuron projection	26203154.	IMP	Component
GO:0043025	neuronal cell body	26203154.	IMP	Component
GO:0043653	mitochondrial fragmentation involved in apoptotic process	-	ISO	Process
GO:0045056	transcytosis	-	ISO	Process
GO:0048471	perinuclear region of cytoplasm	26203154.	IMP	Component
GO:0050728	negative regulation of inflammatory response	-	ISO	Process
GO:0050882	voluntary musculoskeletal movement	26203154.	IMP	Process
GO:0060161	positive regulation of dopamine receptor signaling pathway	-	ISO	Process
GO:0060548	negative regulation of cell death	-	ISO	Process
GO:0061357	positive regulation of Wnt protein secretion	18160348.	IMP	Process
GO:0090141	positive regulation of mitochondrial fission	-	ISO	Process
GO:0090263	positive regulation of canonical Wnt signaling pathway	17239604.	IGI	Process
GO:0090326	positive regulation of locomotion involved in locomotory behavior	26203154.	IMP	Process
GO:0097422	tubular endosome	-	ISO	Component
GO:0098793	presynapse	29445238.	IDA	Component
GO:0098794	postsynapse	26521016.	EXP	Component
GO:0098794	postsynapse	26521016.	IDA	Component
GO:0098887	neurotransmitter receptor transport, endosome to postsynaptic membrane	28384478.	IDA	Process
GO:0098887	neurotransmitter receptor transport, endosome to postsynaptic membrane	28384478.	IMP	Process
GO:0098978	glutamatergic synapse	26521016.	EXP	Component
GO:0098978	glutamatergic synapse	26521016.28384478.	IDA	Component
GO:0098978	glutamatergic synapse	26521016.28384478.	IMP	Component
GO:0099003	vesicle-mediated transport in synapse	28384478.	IDA	Process
GO:0099003	vesicle-mediated transport in synapse	28384478.	IMP	Process
GO:0099073	mitochondrion-derived vesicle	-	ISO	Component
GO:0099074	mitochondrion to lysosome transport	-	ISO	Process
GO:0099639	neurotransmitter receptor transport, endosome to plasma membrane	27460146.	IMP	Process
GO:0099639	neurotransmitter receptor transport, endosome to plasma membrane	-	ISO	Process
GO:1901215	negative regulation of neuron death	26203154.	IMP	Process
GO:1901215	negative regulation of neuron death	-	ISO	Process
GO:1902823	negative regulation of late endosome to lysosome transport	-	ISO	Process
GO:1902950	regulation of dendritic spine maintenance	-	ISO	Process
GO:1903181	positive regulation of dopamine biosynthetic process	26203154.	IMP	Process
GO:1903364	positive regulation of cellular protein catabolic process	-	ISO	Process
GO:1903828	negative regulation of cellular protein localization	26203154.	IMP	Process
GO:1905166	negative regulation of lysosomal protein catabolic process	26203154.	IMP	Process
GO:1990126	retrograde transport, endosome to plasma membrane	-	ISO	Process
GO:2000331	regulation of terminal button organization	-	ISO	Process