EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000031715 (Gene tree)
Gene ID: 93762
Gene Symbol: Smarca5
Alias: 4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 40991 bases
Position: chr8:80698507-80739497
Accession: 1935129
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000044361	ResIII	PF04851.15	1.3e-10	1	1
ENSMUSP00000044361	DEAD	PF00270.29	3.9e-06	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000043359	-	6113	-	ENSMUSP00000044361	1051 (aa)	-	Q91ZW3
ENSMUST00000122807	-	3292	-	-	- (aa)	-	-
ENSMUST00000142470	-	503	-	-	- (aa)	-	-
ENSMUST00000150277	-	334	-	-	- (aa)	-	-
ENSMUST00000140110	-	701	-	-	- (aa)	-	-
ENSMUST00000148455	-	722	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000031715's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000031715's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000031715	Smarca5	55	42.424	ENSMUSG00000028089	Chd1l	64	42.568
ENSMUSG00000031715	Smarca5	93	84.280	ENSMUSG00000031099	Smarca1	93	84.280
ENSMUSG00000031715	Smarca5	51	42.179	ENSMUSG00000056608	Chd9	58	43.590

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000031715	Smarca5	100	97.624	ENSG00000153147	SMARCA5	100	97.624	Homo_sapiens
ENSMUSG00000031715	Smarca5	100	98.099	ENSAMEG00000009585	SMARCA5	100	98.099	Ailuropoda_melanoleuca
ENSMUSG00000031715	Smarca5	92	96.612	ENSAPLG00000009206	SMARCA5	100	96.612	Anas_platyrhynchos
ENSMUSG00000031715	Smarca5	98	93.986	ENSACAG00000003038	SMARCA5	99	93.986	Anolis_carolinensis
ENSMUSG00000031715	Smarca5	100	97.719	ENSANAG00000019345	SMARCA5	99	98.996	Aotus_nancymaae
ENSMUSG00000031715	Smarca5	100	97.719	ENSBTAG00000003399	SMARCA5	100	97.719	Bos_taurus
ENSMUSG00000031715	Smarca5	100	97.814	ENSCJAG00000002735	SMARCA5	100	97.814	Callithrix_jacchus
ENSMUSG00000031715	Smarca5	100	98.004	ENSCAFG00000007525	SMARCA5	100	98.004	Canis_familiaris
ENSMUSG00000031715	Smarca5	98	97.965	ENSCAFG00020025641	SMARCA5	99	97.965	Canis_lupus_dingo
ENSMUSG00000031715	Smarca5	100	96.293	ENSCHIG00000016375	-	100	96.293	Capra_hircus
ENSMUSG00000031715	Smarca5	100	98.004	ENSCHIG00000013730	-	100	98.004	Capra_hircus
ENSMUSG00000031715	Smarca5	96	98.213	ENSTSYG00000009954	SMARCA5	99	99.194	Carlito_syrichta
ENSMUSG00000031715	Smarca5	92	99.380	ENSCAPG00000013747	SMARCA5	95	99.380	Cavia_aperea
ENSMUSG00000031715	Smarca5	100	98.097	ENSCPOG00000002259	SMARCA5	100	98.097	Cavia_porcellus
ENSMUSG00000031715	Smarca5	100	97.814	ENSCCAG00000027215	SMARCA5	99	99.096	Cebus_capucinus
ENSMUSG00000031715	Smarca5	100	97.814	ENSCATG00000044917	SMARCA5	100	97.814	Cercocebus_atys
ENSMUSG00000031715	Smarca5	96	97.830	ENSCLAG00000006153	SMARCA5	100	99.496	Chinchilla_lanigera
ENSMUSG00000031715	Smarca5	92	99.381	ENSCSAG00000003448	SMARCA5	100	99.381	Chlorocebus_sabaeus
ENSMUSG00000031715	Smarca5	89	98.405	ENSCHOG00000011724	SMARCA5	88	98.405	Choloepus_hoffmanni
ENSMUSG00000031715	Smarca5	96	95.894	ENSCPBG00000027535	SMARCA5	96	97.700	Chrysemys_picta_bellii
ENSMUSG00000031715	Smarca5	100	97.624	ENSCANG00000041629	SMARCA5	100	97.624	Colobus_angolensis_palliatus
ENSMUSG00000031715	Smarca5	99	98.289	ENSCGRG00001012719	Smarca5	99	98.289	Cricetulus_griseus_chok1gshd
ENSMUSG00000031715	Smarca5	97	98.228	ENSCGRG00000001417	Smarca5	99	99.597	Cricetulus_griseus_crigri
ENSMUSG00000031715	Smarca5	98	95.150	ENSDNOG00000009158	SMARCA5	97	95.784	Dasypus_novemcinctus
ENSMUSG00000031715	Smarca5	90	90.823	ENSDORG00000003466	Smarca5	97	90.823	Dipodomys_ordii
ENSMUSG00000031715	Smarca5	92	85.537	ENSEBUG00000014773	SMARCA5	96	85.537	Eptatretus_burgeri
ENSMUSG00000031715	Smarca5	100	98.194	ENSEASG00005001866	SMARCA5	100	98.194	Equus_asinus_asinus
ENSMUSG00000031715	Smarca5	100	98.194	ENSECAG00000002676	SMARCA5	100	98.194	Equus_caballus
ENSMUSG00000031715	Smarca5	94	95.065	ENSEEUG00000013176	SMARCA5	100	95.065	Erinaceus_europaeus
ENSMUSG00000031715	Smarca5	92	89.175	ENSELUG00000014653	SMARCA5	99	89.175	Esox_lucius
ENSMUSG00000031715	Smarca5	100	98.194	ENSFCAG00000004544	SMARCA5	100	98.194	Felis_catus
ENSMUSG00000031715	Smarca5	92	97.216	ENSFALG00000004987	SMARCA5	100	97.216	Ficedula_albicollis
ENSMUSG00000031715	Smarca5	99	95.606	ENSFDAG00000021016	SMARCA5	100	99.496	Fukomys_damarensis
ENSMUSG00000031715	Smarca5	99	84.918	ENSGMOG00000007519	SMARCA5	94	89.253	Gadus_morhua
ENSMUSG00000031715	Smarca5	95	97.289	ENSGALG00000009913	SMARCA5	97	96.816	Gallus_gallus
ENSMUSG00000031715	Smarca5	95	88.569	ENSGACG00000017238	SMARCA5	97	88.569	Gasterosteus_aculeatus
ENSMUSG00000031715	Smarca5	96	97.143	ENSGAGG00000019882	SMARCA5	96	97.800	Gopherus_agassizii
ENSMUSG00000031715	Smarca5	100	97.624	ENSGGOG00000012595	SMARCA5	99	99.094	Gorilla_gorilla
ENSMUSG00000031715	Smarca5	100	97.621	ENSHGLG00000000816	-	99	97.621	Heterocephalus_glaber_female
ENSMUSG00000031715	Smarca5	96	89.652	ENSHGLG00000000317	-	96	89.621	Heterocephalus_glaber_female
ENSMUSG00000031715	Smarca5	96	98.117	ENSHGLG00100018421	-	100	99.396	Heterocephalus_glaber_male
ENSMUSG00000031715	Smarca5	100	98.386	ENSSTOG00000010683	SMARCA5	99	98.386	Ictidomys_tridecemlineatus
ENSMUSG00000031715	Smarca5	100	97.716	ENSJJAG00000014965	Smarca5	100	97.716	Jaculus_jaculus
ENSMUSG00000031715	Smarca5	95	94.616	ENSLACG00000007091	SMARCA5	99	94.616	Latimeria_chalumnae
ENSMUSG00000031715	Smarca5	94	92.081	ENSLOCG00000008966	SMARCA5	98	90.575	Lepisosteus_oculatus
ENSMUSG00000031715	Smarca5	100	97.909	ENSLAFG00000007795	SMARCA5	100	97.909	Loxodonta_africana
ENSMUSG00000031715	Smarca5	100	97.814	ENSMFAG00000043649	SMARCA5	100	97.814	Macaca_fascicularis
ENSMUSG00000031715	Smarca5	100	97.814	ENSMMUG00000000829	SMARCA5	100	97.814	Macaca_mulatta
ENSMUSG00000031715	Smarca5	100	97.814	ENSMNEG00000031916	SMARCA5	100	97.814	Macaca_nemestrina
ENSMUSG00000031715	Smarca5	100	97.814	ENSMLEG00000042393	SMARCA5	100	97.814	Mandrillus_leucophaeus
ENSMUSG00000031715	Smarca5	95	96.800	ENSMGAG00000003517	SMARCA5	99	96.800	Meleagris_gallopavo
ENSMUSG00000031715	Smarca5	94	99.698	ENSMAUG00000015902	Smarca5	98	99.698	Mesocricetus_auratus
ENSMUSG00000031715	Smarca5	100	97.909	ENSMICG00000003971	SMARCA5	100	97.909	Microcebus_murinus
ENSMUSG00000031715	Smarca5	99	98.287	ENSMOCG00000016986	-	99	98.287	Microtus_ochrogaster
ENSMUSG00000031715	Smarca5	99	96.154	ENSMODG00000000391	SMARCA5	95	98.599	Monodelphis_domestica
ENSMUSG00000031715	Smarca5	100	99.810	MGP_PahariEiJ_G0022862	Smarca5	100	99.810	Mus_pahari
ENSMUSG00000031715	Smarca5	100	98.194	ENSMLUG00000000468	SMARCA5	100	98.194	Myotis_lucifugus
ENSMUSG00000031715	Smarca5	100	98.953	ENSNGAG00000000441	Smarca5	100	98.953	Nannospalax_galili
ENSMUSG00000031715	Smarca5	100	97.814	ENSNLEG00000005383	SMARCA5	100	97.814	Nomascus_leucogenys
ENSMUSG00000031715	Smarca5	92	91.219	ENSMEUG00000001267	SMARCA5	100	91.219	Notamacropus_eugenii
ENSMUSG00000031715	Smarca5	85	98.429	ENSOPRG00000014427	SMARCA5	86	98.429	Ochotona_princeps
ENSMUSG00000031715	Smarca5	92	98.968	ENSOANG00000013921	SMARCA5	100	98.968	Ornithorhynchus_anatinus
ENSMUSG00000031715	Smarca5	92	99.794	ENSOCUG00000013042	SMARCA5	100	99.794	Oryctolagus_cuniculus
ENSMUSG00000031715	Smarca5	100	97.909	ENSOGAG00000009702	SMARCA5	100	97.909	Otolemur_garnettii
ENSMUSG00000031715	Smarca5	99	97.716	ENSOARG00000010589	SMARCA5	99	97.716	Ovis_aries
ENSMUSG00000031715	Smarca5	100	97.433	ENSPPAG00000028523	SMARCA5	99	98.993	Pan_paniscus
ENSMUSG00000031715	Smarca5	97	92.969	ENSPPRG00000004925	SMARCA5	97	94.020	Panthera_pardus
ENSMUSG00000031715	Smarca5	96	99.108	ENSPTIG00000020959	SMARCA5	97	99.108	Panthera_tigris_altaica
ENSMUSG00000031715	Smarca5	100	97.529	ENSPTRG00000016472	SMARCA5	99	99.094	Pan_troglodytes
ENSMUSG00000031715	Smarca5	100	97.814	ENSPANG00000001175	SMARCA5	100	97.814	Papio_anubis
ENSMUSG00000031715	Smarca5	95	89.347	ENSPKIG00000015699	SMARCA5	98	89.598	Paramormyrops_kingsleyae
ENSMUSG00000031715	Smarca5	95	89.200	ENSPKIG00000015885	SMARCA5	100	91.031	Paramormyrops_kingsleyae
ENSMUSG00000031715	Smarca5	95	95.787	ENSPSIG00000004177	SMARCA5	100	95.787	Pelodiscus_sinensis
ENSMUSG00000031715	Smarca5	92	89.712	ENSPMGG00000012316	SMARCA5	100	89.712	Periophthalmus_magnuspinnatus
ENSMUSG00000031715	Smarca5	97	97.931	ENSPEMG00000008060	Smarca5	99	97.931	Peromyscus_maniculatus_bairdii
ENSMUSG00000031715	Smarca5	96	69.420	ENSPMAG00000006011	SMARCA5	82	83.830	Petromyzon_marinus
ENSMUSG00000031715	Smarca5	61	86.739	ENSPMAG00000008026	SMARCA5	99	86.739	Petromyzon_marinus
ENSMUSG00000031715	Smarca5	99	95.857	ENSPCIG00000003926	SMARCA5	96	98.113	Phascolarctos_cinereus
ENSMUSG00000031715	Smarca5	100	97.909	ENSPPYG00000015091	SMARCA5	100	97.909	Pongo_abelii
ENSMUSG00000031715	Smarca5	86	89.039	ENSPCAG00000014230	SMARCA5	88	89.877	Procavia_capensis
ENSMUSG00000031715	Smarca5	100	95.152	ENSPCOG00000026744	SMARCA5	100	95.152	Propithecus_coquereli
ENSMUSG00000031715	Smarca5	99	97.810	ENSPVAG00000006482	SMARCA5	100	97.810	Pteropus_vampyrus
ENSMUSG00000031715	Smarca5	97	87.941	ENSPNAG00000027824	SMARCA5	97	90.145	Pygocentrus_nattereri
ENSMUSG00000031715	Smarca5	95	99.698	ENSRNOG00000018149	Smarca5	100	99.698	Rattus_norvegicus
ENSMUSG00000031715	Smarca5	100	97.626	ENSRBIG00000044644	SMARCA5	100	97.626	Rhinopithecus_bieti
ENSMUSG00000031715	Smarca5	98	97.483	ENSRROG00000029591	SMARCA5	99	99.095	Rhinopithecus_roxellana
ENSMUSG00000031715	Smarca5	100	97.909	ENSSBOG00000036257	SMARCA5	100	97.909	Saimiri_boliviensis_boliviensis
ENSMUSG00000031715	Smarca5	94	98.792	ENSSHAG00000008464	SMARCA5	100	98.792	Sarcophilus_harrisii
ENSMUSG00000031715	Smarca5	100	86.217	ENSSFOG00015013252	SMARCA5	97	89.631	Scleropages_formosus
ENSMUSG00000031715	Smarca5	98	93.598	ENSSPUG00000007604	SMARCA5	99	96.181	Sphenodon_punctatus
ENSMUSG00000031715	Smarca5	100	97.814	ENSSSCG00000009047	SMARCA5	100	97.814	Sus_scrofa
ENSMUSG00000031715	Smarca5	96	96.032	ENSTGUG00000002408	SMARCA5	99	96.300	Taeniopygia_guttata
ENSMUSG00000031715	Smarca5	98	97.965	ENSUAMG00000023495	SMARCA5	99	97.965	Ursus_americanus
ENSMUSG00000031715	Smarca5	95	99.202	ENSUMAG00000015324	SMARCA5	97	99.202	Ursus_maritimus
ENSMUSG00000031715	Smarca5	100	97.719	ENSVPAG00000008982	SMARCA5	100	97.719	Vicugna_pacos
ENSMUSG00000031715	Smarca5	100	98.004	ENSVVUG00000017473	SMARCA5	100	98.004	Vulpes_vulpes
ENSMUSG00000031715	Smarca5	95	89.089	ENSXETG00000017566	smarca5	95	93.031	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000183	chromatin silencing at rDNA	16085498.	IDA	Process
GO:0000793	condensed chromosome	-	ISO	Component
GO:0001650	fibrillar center	-	ISO	Component
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	ISO	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005515	protein binding	11980720.16085498.16675956.19092802.	IPI	Function
GO:0005524	ATP binding	-	ISO	Function
GO:0005634	nucleus	11980720.16880268.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005677	chromatin silencing complex	16085498.	IDA	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0006333	chromatin assembly or disassembly	11980720.	IDA	Process
GO:0006334	nucleosome assembly	-	ISO	Process
GO:0006338	chromatin remodeling	11980720.	IDA	Process
GO:0006338	chromatin remodeling	11532953.	IGI	Process
GO:0006338	chromatin remodeling	-	ISO	Process
GO:0006352	DNA-templated transcription, initiation	-	ISO	Process
GO:0016584	nucleosome positioning	-	ISO	Process
GO:0016589	NURF complex	-	ISO	Component
GO:0016787	hydrolase activity	-	IEA	Function
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	-	IEA	Function
GO:0016887	ATPase activity	-	ISO	Function
GO:0031010	ISWI-type complex	22154806.	IPI	Component
GO:0031213	RSF complex	-	ISO	Component
GO:0031491	nucleosome binding	-	IEA	Function
GO:0042393	histone binding	-	ISO	Function
GO:0043044	ATP-dependent chromatin remodeling	-	ISO	Process
GO:0043596	nuclear replication fork	-	ISO	Component
GO:0045893	positive regulation of transcription, DNA-templated	16880268.	IMP	Process
GO:0045893	positive regulation of transcription, DNA-templated	11980720.	TAS	Process
GO:1990830	cellular response to leukemia inhibitory factor	20439489.	IEP	Process