EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000031792 (Gene tree)
Gene ID: 101985
Gene Symbol: Usb1
Alias: AA960436
Full Name: U6 snRNA biogenesis 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 15224 bases
Position: chr8:95332284-95347507
Accession: 2142454
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000034245	HVSL	PF09749.9	2.2e-65	1	1
ENSMUSP00000122529	HVSL	PF09749.9	2.8e-31	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000126180	-	1082	-	ENSMUSP00000122529	113 (aa)	-	D3Z5I2
ENSMUST00000213059	-	335	-	ENSMUSP00000148673	45 (aa)	-	A0A1D5RM87
ENSMUST00000145060	-	871	-	-	- (aa)	-	-
ENSMUST00000151223	-	527	-	-	- (aa)	-	-
ENSMUST00000034245	-	1758	XM_006530521	ENSMUSP00000034245	267 (aa)	XP_006530584	A0A0R4J0E0

Gene Model

Click here to download ENSMUSG00000031792's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000031792's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000031792	Usb1	100	82.301	ENSG00000103005	USB1	100	84.579	Homo_sapiens
ENSMUSG00000031792	Usb1	99	52.679	ENSAPOG00000011942	usb1	99	48.746	Acanthochromis_polyacanthus
ENSMUSG00000031792	Usb1	100	79.646	ENSAMEG00000017205	USB1	100	79.554	Ailuropoda_melanoleuca
ENSMUSG00000031792	Usb1	99	50.893	ENSACIG00000012234	usb1	99	52.593	Amphilophus_citrinellus
ENSMUSG00000031792	Usb1	99	51.786	ENSAOCG00000014831	usb1	99	48.754	Amphiprion_ocellaris
ENSMUSG00000031792	Usb1	99	51.786	ENSAPEG00000000296	usb1	99	49.110	Amphiprion_percula
ENSMUSG00000031792	Usb1	99	50.893	ENSATEG00000009348	usb1	99	49.643	Anabas_testudineus
ENSMUSG00000031792	Usb1	91	65.049	ENSAPLG00000002756	USB1	100	67.699	Anas_platyrhynchos
ENSMUSG00000031792	Usb1	96	63.889	ENSACAG00000015481	USB1	100	63.755	Anolis_carolinensis
ENSMUSG00000031792	Usb1	100	85.841	ENSANAG00000035640	USB1	100	81.648	Aotus_nancymaae
ENSMUSG00000031792	Usb1	99	50.000	ENSACLG00000020586	usb1	99	48.929	Astatotilapia_calliptera
ENSMUSG00000031792	Usb1	99	50.000	ENSAMXG00000040146	usb1	95	47.405	Astyanax_mexicanus
ENSMUSG00000031792	Usb1	100	82.301	ENSBTAG00000015758	USB1	100	79.775	Bos_taurus
ENSMUSG00000031792	Usb1	100	85.841	ENSCJAG00000011733	USB1	100	81.648	Callithrix_jacchus
ENSMUSG00000031792	Usb1	100	81.416	ENSCAFG00000008556	USB1	73	78.309	Canis_familiaris
ENSMUSG00000031792	Usb1	100	81.416	ENSCAFG00020009263	USB1	99	79.478	Canis_lupus_dingo
ENSMUSG00000031792	Usb1	100	78.761	ENSCHIG00000024290	USB1	100	77.903	Capra_hircus
ENSMUSG00000031792	Usb1	100	84.071	ENSTSYG00000006997	USB1	100	82.397	Carlito_syrichta
ENSMUSG00000031792	Usb1	100	78.761	ENSCAPG00000009057	USB1	100	68.534	Cavia_aperea
ENSMUSG00000031792	Usb1	100	80.224	ENSCPOG00000014325	USB1	100	80.224	Cavia_porcellus
ENSMUSG00000031792	Usb1	100	87.611	ENSCCAG00000022132	USB1	100	82.397	Cebus_capucinus
ENSMUSG00000031792	Usb1	100	84.956	ENSCATG00000032174	USB1	100	81.648	Cercocebus_atys
ENSMUSG00000031792	Usb1	66	85.795	ENSCLAG00000007363	USB1	100	85.795	Chinchilla_lanigera
ENSMUSG00000031792	Usb1	100	84.956	ENSCSAG00000004783	USB1	100	81.648	Chlorocebus_sabaeus
ENSMUSG00000031792	Usb1	100	59.292	ENSCPBG00000026943	USB1	100	60.573	Chrysemys_picta_bellii
ENSMUSG00000031792	Usb1	84	32.314	ENSCING00000011490	-	98	30.882	Ciona_intestinalis
ENSMUSG00000031792	Usb1	91	33.962	ENSCSAVG00000000894	-	81	32.444	Ciona_savignyi
ENSMUSG00000031792	Usb1	100	84.071	ENSCANG00000037135	USB1	100	80.150	Colobus_angolensis_palliatus
ENSMUSG00000031792	Usb1	100	89.381	ENSCGRG00001011243	USB1	100	88.060	Cricetulus_griseus_chok1gshd
ENSMUSG00000031792	Usb1	100	89.381	ENSCGRG00000013252	USB1	100	88.060	Cricetulus_griseus_crigri
ENSMUSG00000031792	Usb1	99	53.571	ENSCSEG00000013881	usb1	99	47.636	Cynoglossus_semilaevis
ENSMUSG00000031792	Usb1	98	44.248	ENSCVAG00000009252	usb1	97	49.565	Cyprinodon_variegatus
ENSMUSG00000031792	Usb1	99	47.321	ENSDARG00000003841	usb1	99	45.091	Danio_rerio
ENSMUSG00000031792	Usb1	100	84.071	ENSDORG00000001888	Usb1	100	82.022	Dipodomys_ordii
ENSMUSG00000031792	Usb1	91	41.509	FBgn0037713	CG16790	78	39.423	Drosophila_melanogaster
ENSMUSG00000031792	Usb1	100	77.876	ENSETEG00000019682	USB1	100	67.416	Echinops_telfairi
ENSMUSG00000031792	Usb1	100	51.327	ENSEBUG00000005889	usb1	78	50.450	Eptatretus_burgeri
ENSMUSG00000031792	Usb1	100	86.726	ENSEASG00005005484	USB1	100	83.146	Equus_asinus_asinus
ENSMUSG00000031792	Usb1	100	84.956	ENSECAG00000019493	USB1	91	82.397	Equus_caballus
ENSMUSG00000031792	Usb1	66	76.136	ENSEEUG00000000154	USB1	66	76.136	Erinaceus_europaeus
ENSMUSG00000031792	Usb1	99	45.133	ENSELUG00000010974	usb1	99	45.055	Esox_lucius
ENSMUSG00000031792	Usb1	100	84.956	ENSFCAG00000002693	USB1	100	81.648	Felis_catus
ENSMUSG00000031792	Usb1	98	61.261	ENSFALG00000006876	USB1	99	58.868	Ficedula_albicollis
ENSMUSG00000031792	Usb1	100	83.186	ENSFDAG00000010052	USB1	100	82.022	Fukomys_damarensis
ENSMUSG00000031792	Usb1	88	51.000	ENSFHEG00000012334	usb1	96	46.748	Fundulus_heteroclitus
ENSMUSG00000031792	Usb1	99	50.000	ENSGMOG00000004228	usb1	99	52.915	Gadus_morhua
ENSMUSG00000031792	Usb1	100	61.404	ENSGALG00000035604	USB1	99	61.278	Gallus_gallus
ENSMUSG00000031792	Usb1	99	50.442	ENSGAFG00000021890	usb1	99	49.455	Gambusia_affinis
ENSMUSG00000031792	Usb1	99	48.214	ENSGACG00000003257	usb1	99	48.913	Gasterosteus_aculeatus
ENSMUSG00000031792	Usb1	100	62.774	ENSGAGG00000022572	USB1	100	62.774	Gopherus_agassizii
ENSMUSG00000031792	Usb1	100	84.071	ENSGGOG00000017147	USB1	100	80.899	Gorilla_gorilla
ENSMUSG00000031792	Usb1	99	50.000	ENSHBUG00000009823	usb1	99	49.104	Haplochromis_burtoni
ENSMUSG00000031792	Usb1	100	83.186	ENSHGLG00000016078	USB1	98	82.397	Heterocephalus_glaber_female
ENSMUSG00000031792	Usb1	100	83.186	ENSHGLG00100005562	USB1	98	82.397	Heterocephalus_glaber_male
ENSMUSG00000031792	Usb1	99	53.571	ENSHCOG00000015633	usb1	99	52.290	Hippocampus_comes
ENSMUSG00000031792	Usb1	100	50.442	ENSIPUG00000008601	usb1	99	46.735	Ictalurus_punctatus
ENSMUSG00000031792	Usb1	100	85.841	ENSSTOG00000007548	USB1	100	80.952	Ictidomys_tridecemlineatus
ENSMUSG00000031792	Usb1	100	86.891	ENSJJAG00000021859	Usb1	100	86.891	Jaculus_jaculus
ENSMUSG00000031792	Usb1	99	50.893	ENSKMAG00000007200	usb1	99	46.786	Kryptolebias_marmoratus
ENSMUSG00000031792	Usb1	99	49.107	ENSLBEG00000008452	usb1	64	54.211	Labrus_bergylta
ENSMUSG00000031792	Usb1	90	62.745	ENSLACG00000000105	USB1	92	54.307	Latimeria_chalumnae
ENSMUSG00000031792	Usb1	100	52.212	ENSLOCG00000000465	usb1	99	51.246	Lepisosteus_oculatus
ENSMUSG00000031792	Usb1	100	67.407	ENSLAFG00000002267	USB1	100	68.148	Loxodonta_africana
ENSMUSG00000031792	Usb1	100	84.956	ENSMFAG00000003926	USB1	100	81.648	Macaca_fascicularis
ENSMUSG00000031792	Usb1	100	84.956	ENSMMUG00000022669	USB1	100	81.648	Macaca_mulatta
ENSMUSG00000031792	Usb1	100	84.956	ENSMNEG00000042487	USB1	100	81.273	Macaca_nemestrina
ENSMUSG00000031792	Usb1	100	84.956	ENSMLEG00000028756	USB1	100	81.648	Mandrillus_leucophaeus
ENSMUSG00000031792	Usb1	99	51.786	ENSMAMG00000015092	usb1	99	50.360	Mastacembelus_armatus
ENSMUSG00000031792	Usb1	99	50.000	ENSMZEG00005010008	usb1	99	49.104	Maylandia_zebra
ENSMUSG00000031792	Usb1	100	88.496	ENSMAUG00000007832	Usb1	100	87.266	Mesocricetus_auratus
ENSMUSG00000031792	Usb1	100	85.841	ENSMICG00000004900	USB1	100	81.273	Microcebus_murinus
ENSMUSG00000031792	Usb1	100	87.640	ENSMOCG00000022647	Usb1	100	87.640	Microtus_ochrogaster
ENSMUSG00000031792	Usb1	99	51.786	ENSMMOG00000000490	usb1	99	50.000	Mola_mola
ENSMUSG00000031792	Usb1	100	69.027	ENSMODG00000014067	USB1	100	66.790	Monodelphis_domestica
ENSMUSG00000031792	Usb1	99	48.214	ENSMALG00000005930	usb1	99	48.043	Monopterus_albus
ENSMUSG00000031792	Usb1	100	98.230	MGP_CAROLIEiJ_G0031421	Usb1	100	98.230	Mus_caroli
ENSMUSG00000031792	Usb1	100	96.460	MGP_PahariEiJ_G0023019	Usb1	100	96.581	Mus_pahari
ENSMUSG00000031792	Usb1	100	97.753	MGP_SPRETEiJ_G0032540	Usb1	100	97.753	Mus_spretus
ENSMUSG00000031792	Usb1	100	80.531	ENSMPUG00000004684	USB1	96	79.182	Mustela_putorius_furo
ENSMUSG00000031792	Usb1	100	81.416	ENSMLUG00000007400	USB1	100	84.416	Myotis_lucifugus
ENSMUSG00000031792	Usb1	100	90.265	ENSNGAG00000009703	Usb1	100	87.732	Nannospalax_galili
ENSMUSG00000031792	Usb1	99	48.214	ENSNBRG00000008747	usb1	99	53.738	Neolamprologus_brichardi
ENSMUSG00000031792	Usb1	100	84.071	ENSNLEG00000003340	USB1	100	80.159	Nomascus_leucogenys
ENSMUSG00000031792	Usb1	87	70.408	ENSMEUG00000003328	-	100	59.873	Notamacropus_eugenii
ENSMUSG00000031792	Usb1	100	78.761	ENSOPRG00000011803	USB1	72	94.118	Ochotona_princeps
ENSMUSG00000031792	Usb1	100	80.531	ENSODEG00000016214	USB1	100	80.524	Octodon_degus
ENSMUSG00000031792	Usb1	99	50.893	ENSONIG00000011063	usb1	99	49.821	Oreochromis_niloticus
ENSMUSG00000031792	Usb1	100	70.175	ENSOANG00000012118	USB1	94	71.111	Ornithorhynchus_anatinus
ENSMUSG00000031792	Usb1	99	49.107	ENSORLG00000012479	usb1	99	47.794	Oryzias_latipes
ENSMUSG00000031792	Usb1	99	48.214	ENSORLG00020018671	usb1	99	47.059	Oryzias_latipes_hni
ENSMUSG00000031792	Usb1	99	49.107	ENSORLG00015009679	usb1	99	47.426	Oryzias_latipes_hsok
ENSMUSG00000031792	Usb1	99	52.679	ENSOMEG00000012930	usb1	99	47.687	Oryzias_melastigma
ENSMUSG00000031792	Usb1	100	74.157	ENSOGAG00000003273	USB1	100	75.655	Otolemur_garnettii
ENSMUSG00000031792	Usb1	100	79.646	ENSOARG00000001107	USB1	94	77.642	Ovis_aries
ENSMUSG00000031792	Usb1	100	84.071	ENSPPAG00000042137	USB1	100	81.273	Pan_paniscus
ENSMUSG00000031792	Usb1	100	84.956	ENSPPRG00000024797	USB1	100	81.273	Panthera_pardus
ENSMUSG00000031792	Usb1	100	84.956	ENSPTIG00000007506	USB1	100	81.273	Panthera_tigris_altaica
ENSMUSG00000031792	Usb1	100	83.186	ENSPTRG00000008172	USB1	100	85.047	Pan_troglodytes
ENSMUSG00000031792	Usb1	100	84.956	ENSPANG00000025138	USB1	100	81.648	Papio_anubis
ENSMUSG00000031792	Usb1	100	47.788	ENSPKIG00000015109	usb1	99	45.763	Paramormyrops_kingsleyae
ENSMUSG00000031792	Usb1	88	52.525	ENSPSIG00000004305	USB1	100	50.222	Pelodiscus_sinensis
ENSMUSG00000031792	Usb1	99	50.000	ENSPMGG00000017725	usb1	98	49.425	Periophthalmus_magnuspinnatus
ENSMUSG00000031792	Usb1	100	92.920	ENSPEMG00000016183	Usb1	100	87.868	Peromyscus_maniculatus_bairdii
ENSMUSG00000031792	Usb1	100	50.435	ENSPMAG00000000462	usb1	100	50.633	Petromyzon_marinus
ENSMUSG00000031792	Usb1	98	48.561	ENSPFOG00000011130	usb1	99	49.097	Poecilia_formosa
ENSMUSG00000031792	Usb1	99	49.558	ENSPLAG00000009820	usb1	99	49.097	Poecilia_latipinna
ENSMUSG00000031792	Usb1	98	48.913	ENSPMEG00000006402	usb1	99	48.913	Poecilia_mexicana
ENSMUSG00000031792	Usb1	88	53.000	ENSPREG00000001047	usb1	98	50.000	Poecilia_reticulata
ENSMUSG00000031792	Usb1	100	78.070	ENSPPYG00000007401	USB1	100	77.559	Pongo_abelii
ENSMUSG00000031792	Usb1	100	85.841	ENSPCOG00000022612	USB1	100	81.273	Propithecus_coquereli
ENSMUSG00000031792	Usb1	100	83.186	ENSPVAG00000004613	USB1	100	78.652	Pteropus_vampyrus
ENSMUSG00000031792	Usb1	99	50.000	ENSPNYG00000022262	usb1	99	49.104	Pundamilia_nyererei
ENSMUSG00000031792	Usb1	99	51.786	ENSPNAG00000011736	usb1	99	46.102	Pygocentrus_nattereri
ENSMUSG00000031792	Usb1	100	92.920	ENSRNOG00000013216	Usb1	100	91.760	Rattus_norvegicus
ENSMUSG00000031792	Usb1	100	84.956	ENSRBIG00000044466	USB1	100	86.449	Rhinopithecus_bieti
ENSMUSG00000031792	Usb1	100	84.956	ENSRROG00000029211	USB1	100	81.273	Rhinopithecus_roxellana
ENSMUSG00000031792	Usb1	100	86.726	ENSSBOG00000029362	USB1	100	81.648	Saimiri_boliviensis_boliviensis
ENSMUSG00000031792	Usb1	100	70.796	ENSSHAG00000006993	USB1	100	67.188	Sarcophilus_harrisii
ENSMUSG00000031792	Usb1	100	50.442	ENSSFOG00015023663	usb1	78	52.610	Scleropages_formosus
ENSMUSG00000031792	Usb1	99	51.786	ENSSMAG00000015834	usb1	99	48.299	Scophthalmus_maximus
ENSMUSG00000031792	Usb1	99	51.786	ENSSDUG00000002949	usb1	99	49.638	Seriola_dumerili
ENSMUSG00000031792	Usb1	99	51.786	ENSSLDG00000014174	usb1	99	48.763	Seriola_lalandi_dorsalis
ENSMUSG00000031792	Usb1	100	63.717	ENSSPUG00000006741	USB1	100	65.888	Sphenodon_punctatus
ENSMUSG00000031792	Usb1	99	50.000	ENSSPAG00000007484	usb1	99	46.643	Stegastes_partitus
ENSMUSG00000031792	Usb1	100	83.186	ENSSSCG00000002807	USB1	100	80.669	Sus_scrofa
ENSMUSG00000031792	Usb1	98	62.162	ENSTGUG00000004792	USB1	99	60.377	Taeniopygia_guttata
ENSMUSG00000031792	Usb1	99	48.214	ENSTRUG00000021069	usb1	99	48.327	Takifugu_rubripes
ENSMUSG00000031792	Usb1	99	46.792	ENSTNIG00000000626	usb1	99	46.792	Tetraodon_nigroviridis
ENSMUSG00000031792	Usb1	100	64.602	ENSTBEG00000001507	USB1	100	60.776	Tupaia_belangeri
ENSMUSG00000031792	Usb1	100	80.531	ENSUAMG00000016823	USB1	100	79.554	Ursus_americanus
ENSMUSG00000031792	Usb1	100	80.531	ENSUMAG00000021369	USB1	100	83.178	Ursus_maritimus
ENSMUSG00000031792	Usb1	72	77.778	ENSVPAG00000009834	-	59	81.667	Vicugna_pacos
ENSMUSG00000031792	Usb1	100	81.416	ENSVVUG00000023700	USB1	95	79.184	Vulpes_vulpes
ENSMUSG00000031792	Usb1	91	56.311	ENSXETG00000013795	usb1	99	52.290	Xenopus_tropicalis
ENSMUSG00000031792	Usb1	99	50.442	ENSXMAG00000024687	usb1	80	49.796	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000175	3'-5'-exoribonuclease activity	21873635.	IBA	Function
GO:0000175	3'-5'-exoribonuclease activity	-	ISO	Function
GO:0004518	nuclease activity	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0008380	RNA splicing	-	ISO	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0034477	U6 snRNA 3'-end processing	21873635.	IBA	Process
GO:0034477	U6 snRNA 3'-end processing	-	ISO	Process
GO:0045171	intercellular bridge	-	ISO	Component